Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                <---------DOF5.7(2)                                                         <-----------GT1        ---------->DOF2   ---                                                        <<<<<<<<<<GT-3b---------->DOF2          -----                                               <---------MYB52(1) <----------DOF2              ------                    <----------DOF2         ---------->ID1---------->ID1      --------->DOF5.7(2) ---       --------->AHL20(2)       xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2 ----------->GT1  <-------   tagccccaattacatttctgttcttttgaaaattttgttttgtttcttcgttttgtatttttctttttctttcaaaagtcgttaaagacttgaaataacc  25248000                                                                                            <--------                                                                                --------->ANAC58                                             --------->GLK1(1)                  --------->ANAC58                                             <---------GLK1(1)                  --------->ANAC46  <--       <---------YAB1              <---------ANAC46                             --------->ANAC55(2) --->MYB83                       <-----------HVH21                              <---------ANAC55(2) ----->P<---------MYB46(3)      --------->bZIP60(1)                             --------->ANAC55(1) -->GAMYB<-------GAMYB   <---------GLK1(1)--------->ANAC58                <-----------TBP --------->ICU4 --->MYB46(3)         --------->ICU4      --------->ANAC58         ------>ZmHOX2a(1)      <---------AHL20(2) --->MYB46(1)         <---------YAB1 --------->AtLEC2            ----------->RAV1(2)      --------->AHL20(2) ----GT1----------->GT1--------->ATHB12 ---------->DOF2      <---------AHL20(2)<---------LBD16-------   aacttggtgatggttatatatgttatgatttctggtgtcatggaaagaaatctgaatgcatattttatcctgtgccatttatacggaatgcattaattgt  25248100                             <---------WRKY38(1)                            <<<<<<<<<WRKY6          <---------AHL20(2)                 <---------AHL20(2)           ----------->GT1       <---------AHL20(2)                --------->AHL20(2)         --------->MYB52(1) --------->YAB1                   ------            <---------AHL20(2)           <---------MYB59--------->YAB1                        <------            --------->AHL20(1)           <---------MYB52(2)  ----------->GT1         --------->YAB1 < ----CBF    --------->AHL20(2)           <------------MYB.PH3(2)    --------->AHL20(2)      <-------- -------AHL20(2)<---------AHL20(2)     <-----------GT1<------------CBF             --------->AHL20(2) ---->GT1   <---------AHL20(1)      --------->YAB1  --------->AHL20(2)            --------->YAB1    <   taaattctttccattttattaaatgtcatagtcaacaaaaataactaactgttataaattgtaatgaaaattaaaaatgaagaataaaaataaactttga  25248200                         <---------CCA1(1)                        --------->ARR14(2)                        <---------ARR11(3)                        <---------ARR14(2)               <---------ICU4               --------->ATHB51               -------->ATHB1               <--------HAHB4               --------->YAB1              --------->ICU4              <---------YAB1                                                 <---------AHL20(2) --->ATHB12   <---------ATHB51                                     --------->ARR11(3) ---YAB1   <---------YAB1<---------RVE1(1)              <---------CCA1(2)  <-----------TBP    <------ ---------TOE2(3)       --------->ARR11(3)  <---------YAB1        <---------CCA1(2) <-----------GT1 --DOF2   ------------>CBF      <-------GAMYB--------->YAB1   <---------ANAC46   --------->ANAC55(2) ---------TOE1(3) <-----------GT1<---------MYB52(1)   <---------CCA1(2)   ------->TEIL        -------   ttagggtttcattacaattattaccagatattttcgttgtctgactataatcactcttatctcttcgtatatcatgtatatatatgtaacctcttcgtct  25248300                                                                                                   --                                                                                                 ---- ---CCA1(2)        ------>ZmHOX2a(1)                                                           <----- --->ID1      --------->YAB1           <---------REM1(2)                                 --------->AtMYB61   ctcttctcttcatctataatcctattctaatctctctagtctacaagtcgaaatgagtcaattccctctctcaattctcaaaacctctcaacctcaccat  25248400                                                                                          ------>NtERF2                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                        <------ZmHOX2a(2)                  <------ZmHOX2a(2)<------ZmHOX2a(2)                 ------->TEIL                         --------------------->WRI1 <---------ZAT18                --------->ANAC46                    ------>ZmHOX2a(1)<---------SPL7      --------->ANAC46              --------->ANAC58                      ===============================HOX2a_HOX2a      <              --------->ANAC58                      ==============HOX2a_HOX2a    --------->ZAT14 ----              --------->ANAC46                     --------->TOE2(3) ------>NtERF2       --------->DEAR3(1)     <---------ARR14(2) ===================================HOX2a_HOX2a--------->MYB52(1) ----------->HVH21     --------->ARR14(2)<---------ARR11(3)       <---------ARR14(2)  ----------->HVH21    --------->LBD16 ------->At4g35610 <---------ALFIN1             --------->ARR14(2)  --------->MYB46(3)  <---------HSFB2a(2) ----->MYB46(3)--------->ZAT18                  ------->TEIL        --------->DEAR3(1)  --------->HSFB2a(2) ------HVH21 ------->TEIL                      <---------CCA1(2)<---------ATHB12 <---------ZAT14 <---   cagcccaaatccatgaacgcaccacgatcatcggatgcaagaggcaaacgtatcctcatcgatccaatcgacgaccggatcagtaaactccccgacgatg  25248500            ------>ZmHOX2a(1)          ------>ZmHOX2a(2)         <---------YAB1        --------->ARR11(3)        <---------ARR11(3)      --------->ICU4       --------->ANAC46                                               <---------DAG2      <---------YAB1      --------->At4g35610                                             <---------ANAC58 <------MYB83 --------->STY1(2)                               --------->ANAC46            <----------DOF2 <------MYB46(1)        --------->ZAT14                    <---------REM1(2)              <---------ANAC58 ---------AtMYB61       <---------ZAT14                  --------->ETT(2)                ------------ ----->ALFIN1 <---------STY1(2)      <----------DOF2<-------GAMYB                       --------->ZAT18 --------RAV1(1)        --------->ZAT18            --------->ALFIN1           ----------->GT1     <--   tgttggtcatgatcctagcaagtttgtccactgaagatgctttgaagacaagtgtgttgtctacacgatggaagaatgtatggaaacaagtgccttacct  25248600                                                                             <---------TOE2(2)                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                               --------->LBD16                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                                                              <---------ANAC58                                                              <---------ANAC46                               <---------ZAT18               <---------LBD16 <---------TOE1(2)                               --------->ZAT18           <---------ZAT6      --------->LBD16     ----                               <---------ZAT14           ===============================RAV   ------- --->AtSPL3          --------->TOE2(2)                   <-----------RAV1(1)<-----------RAV1(2) ----- -------ALFIN1       --------->TOE1(2)         <----------DOF2<---------ANAC58               <-------   ccacttcgatttgctaagtgctacatacgagagtggacttatcgctgctctttccaatagtgttgcggaatcgataacccaggtttctctccatttttcc  25248700      <----------DOF2    <---------At4g35610                                        --------->MYB52(1) -->ZmHOX2a(1)                                          <---------MYB52(1) --->ID1                                <-----------GT1--------->TOE2(3) ---->TOE2(3)        <-----------HVH21 <-----------GT1 --------->TOE1(3)                    <-------- ----GT1   <---------YAB1         <------------------------ANAC81  --------->ATHB12    <---------YAB1   ttattctgctcttatgagtttccagtcaaatgttttgttttttatctgtctcgtttcccttaacttaactgattagattgcattacattttgattcgtag  25248800                                                                                --------->ANAC55(2)                                                                                <---------At4g35610                                                                                <------MYB46(1)                                                                                ----------->GT1                                                                                <---------ANAC55(2)                                                                                <------MYB83                                                                               --------->MYB111(1)                                                                               --------->MYB52(2)                                                                               --------->MYB46(2)                                             <---------AHL20(2)                --------->MYB59                                             --------->AHL20(2)                --------->MYB111(2)                                       <---------ANAC58                       <---------MYB55(1)                                       <---------ANAC58                      <---------MYB52(1)                                       <---------ANAC46                     <-------GAMYB                                    <-------PIF5                           <---------MYB46(3)          <---------ANAC55(2)       ------->PIF5            --------->ANAC55(2)<---------AtMYB61          --------->ANAC55(2)     ------->TEIL       ---------->DOF2      <---------TOE2(3)        --   ----------->GT1              <---------ZAT18    <---------YAB1     <----------DOF2  --------->GLK1(2) -ANAC46  --------->ANAC46      --------->ZAT18 --------->ICU4     <-----------GT1     --------->ARR11(3)   aagaaatgttatacgtgaaccaattgaaatcaaatgcacttgcttatataaatatgaaagtcacatgtttaactttgtggttaggtgattatctggtttt  25248900  Previous    Next  AGI:  At1g67390.1    Description:  F-box family protein. Identical to Putative F-box protein At1g67390 [Arabidopsis Thaliana] (GB:Q9FYF4); similar to F-box protein-related [Arabidopsis thaliana] (TAIR:AT3G60790.1); similar to Os02g0537200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047047.1); similar to hypothetical protein OsI_007404 [Oryza sativa (indica cultivar-group)] (GB:EAY86171.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 25248353    to: 25250802    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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