Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <------MYB46(1)             --------->ZAT2                                                   <------MYB83            ------>MYB83                                                     --------->MYB59            ------>MYB46(1)                                            <---------------AGL15           <---------ALFIN1                                            --------------->AGL15          --------->DEAR3(1)                                          <-----------------AG ----------          --------->MYB46(3)                                          ----------------->AGL3          <---------MYB55(2)                                          <-----------------AGL1          <---------MYB111(2)                                         <-----------------AGL2         --------->ANAC46                                             <-----------------AGL3  -------   --------->HSFC1(2)   --------->AHL20(2)                     ------>ZmHOX2a(2)        <------ZmHOX2a(2) ------->ANAC46       ----------->GT1                         <------ZmHOX2a(2)        --------->ARR14(2) ------->ANAC58      --------->DAG2                          <---------ARR11(3)        <---------ARR14(2) ------->ANAC58     ---------->DOF2      --------->ICU4      --------->ARR11(3)        --------->AGP1 ---------AtSPL3------>MYB83 ---------->DOF2                 <---------ARR14(2)       --------->At4g35610 ---------AtSPL8------>MYB46(1)  ---------->DOF2             --------->ARR14(2)    <---------At4g35610   tacgaaacttcacccacctagcaaaagtaaataaagaaaggaaatgtttgaaaaactaaacacgatctggtttctaaattaggtcatcagatccaacaaa  25241300                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <---------HSFB2a(2)                                          --------->HSFC1(1)                                          --------->HSFB2a(2)        --------->ARR11(3)           <--                                         ------>ZmHOX2a(2)           <---------ARR11(3)           <--                                         ===============================HOX2a_HOX2a               ---                                         ====================HOX2a_HOX2a                       ------                                       --------->ARR11(3)        <------ZmHOX2a(1)             ------                                 <---------ANAC58     <------ZmHOX2a(1)              <---------WOX13(1) ->RAV1(1)                       <---------ANAC58  <-----------RAV1(2)  <----------DOF2        ------ --->DOF2--------->YAB1     <----------DOF2  ---------->DOF2--------->GLK1(2)     <---------YAB1 ----   gactaaatctatgagaaattcaaaattgggctctaccttgtgatctagaaagaccaggagagaatcaggaacatctttgaatttctgatagacaggggtg  25241400              ------>NtERF2           <<<<<<<<<AtERF-3           ------>NtERF2           <<<<<<<<<AtERF-4          <---------RAP2.6(2)          <---------RAP2.3(2)          <---------DEAR3(1)         --------->RAP2.6(3)         --------->ATERF1(1)       ----------->TGA1       ----------->HVH21     <---------MYB46(3)    --------->ALFIN1    <---------AtMYB61    <---------DEAR3(1)               <---------ARR14(2) <---------DEAR3(1)     <----------DOF2                                                         <---- -------O2<---------RAP2.3(3)       <------NtERF2                                               ----- -------bZIP60(1)      <---------DAG2--------->ARR14(2)                       --------->CCA1(2) ----- ------>bZIP60(1)------>ZmHOX2a(1)<---------ANAC46                 <---------ARR14(2)          <----- --->ALFIN1<---------ATERF1(1)   <---------LBD16                <---------ANAC58         --------->ANAC58 ----->TGA1<---------RAP2.3(1)<---------LBD16 <------ZmHOX2a(1) <---------ANAC58         --------->ANAC58 ----->HVH21--------->ATERF1(1)<---------DEAR3(1) --------->LBD16  --------->ARR14(2)--------->ANAC58 ------------------->TaNAC69(2)--------->ANAC46 <---------LBD16 <---------ANAC46     --------->ANAC58   acgacggtggtgacggctccttcgaccttttccacggcggatttgagaggaccggagttttgtttagcgtattcgtagagatttgagacggaagccagaa  25241500     <-------GAMYB         <------MYB46(1)    ------>ZmHOX2a(2)      <------MYB83    --------->MYB52(2)--------->ANAC58    <---------MYB46(3)--------->ANAC58 -----ARR14(2)       ------->TEIL                                               ---------->DOF2 ---->ARR14(2)    --------->ANAC58                                            --------->ANAC46  <---- ---->GLK1(2)     <---------MYB52(2)                   <<<<<<<<<<GT-3b      --------->REM1(1) <------ ----GLK1(2)      --------->ANAC58      <---------ALFIN1<-----------GT1     --------->ANAC46  -------   tatggatcgttgcaattctcacgaacgctaggtgttttagcgctacctccttgctatttttcttctctgtctccatctacaccaaagacgatgaaatcac  25241600                                                                                                  ---                                             <---------ICU4                                       <--                                             --------->YAB1                               <---------ANAC58                                          --------->YAB1                                  <---------ANAC58                                         <---------YAB1                                <----------DOF2                                       --------->YAB1                                 <---------ANAC58      ------>ZmHOX2a(2)               ----------->GT1                                 <---------ANAC58  <---------YAB1<---------ANAC46      --------->ICU4                             <---------ARR14(2) -----YAB1    <---------YAB1          <---------YAB1                             --------->ARR14(2)*TSS -----GT1<---------TOE2(2)      --------->DAG2         --------->TOE1(3) --------->ARR11(3)       <-- -->YAB1 <---------TOE1(2)     ---------->DOF2         --------->TOE2(3) <---------ARR11(3)       ---   gattttgatcgtagttttgagtgaaggaagaacaaaagtgatgataataatctcttaccttagttttttttgtgagttcttccgatttgctttcttgaga  25241700                                                  --------->ANAC46       <-----------HVH21     <---------YAB1--------->ARR14(2)              ----------->GT1    ----------->RAV1(2) --------->bZIP60(1)<---------ARR11(3)          <------ZmHOX2a(1) ------>HSFC1(2)        <---------bZIP60(1)--------->ARR11(3)    <---------ZAT6 -------HSFC1(2)     ----------->TGA1      <-----------ARR10     --------->ALFIN1 -------HSFB2a(1)  <---------ICU4          <---------ARR14(2)  <---------ANAC46                ------ ------>HSFB2a(1)<----------DOF2      ---------->DOF2         <------ZmHOX2a(1)               <------   aatttcgcctgtcactgttctttatgacgttatgaaacagcaaagtatcttcacatcacgttgaggagtgtgaggaatggttaaaaatacgagtggcatt  25241800                                                                                       <---------ANAC46                                                                                       --------->ALFIN1                                                                                     <---------ANAC46                                                                                   <---------ANAC58                                                                                   ==================                                                                                   <---------bZIP60(2)                                                                                   <---------O2                                               <---------ANAC58                    <---------TGA1a                                               <---------ANAC58                    <---------ANAC58                                               ----------->GT1                     <---------ANAC46                                            --------->ALFIN1                     --------->REM1(2)                                 ------>ZmHOX2a(2)                               <-----------HVH21                                --------->CCA1(2)                               --------->ALFIN1                      <---------MYB46(3)  <---------ANAC46                    <---------ANAC58                   <---------MYB46(3)     --------->ALFIN1            --------->HSFB2a(2)        --------->ANAC58        <------ZmHOX2a(2)                     <---------HSFB2a(2)        --------->ANAC55(1)    --------->AGP1  <---------ANAC46       --------->HSFC1(1)        --------->ANAC58       --------->ARR11(3)                     <---------HSFC1(1)        <---------ANAC55(2)    <---------ARR11(3)             --------->GLK1(2) ----------->HVH21  --        --------->ANAC46 <---------YAB1 --------->ALFIN1 ---------->DOF2      <---------ANAC58     <-        --------->bZIP60(2)    <---------AGP1<---------ANAC46<---------GLK1(2)<---------ANAC46<------        --------->ANAC55(2)    --------->ARR14(2)    --------->AHL20(2)  ====================bZIP_DOF ----------------->TaNAC69(2)  <---------ARR14(2)    <---------AHL20(2)  ---------->DOF2      ------- ------CBF      --------->MYB52(1)      <---------ANAC46 ====================================bZIP_DOF   ggacttgtccacgtaatccaacggttgataatagatctgagggtgtgtggggtattaaaaaaagaatcgtttctagaaaggcgtgtcgtgtgtggatgtt  25241900                                                             ------->MYC4                                                             ------->MYC3                                                             <-------MYC4                                                             <-------MYC3                                                             ------->MYC2                                                             <-------MYC2                                                            --------->ANAC55(2)                                                            --------->TGA1a                 <---------PCF2                             ====================bZIP_DOF               <---------RAP2.3(3)                          <---------ANAC55(2)               <---------ZAT18                   <---------------AtSPL3              --------->ALFIN1                   <---------------AtSPL8          --------->At4g35610    <---------ARR11(3)         --------->O2          <---------At4g35610    <---------AHL20(1)         <---------O2  <------------CBF          <    <----------DOF2              --------->ARR11(3)         ====================bZIP_DOF            < ==============bZIP_DOF  ----------->TGA1     --------->GLK1(2)      <----------DOF2             ---- ------->HSFB2a(2)  --------->ANAC58         <---------GLK1(2)   <---------ARR14(2)             ----- --------HSFB2a(2)  --------->ANAC58         <---------ARR14(2)  <---------ZAT14      ------->TEIL -- ---HSFC1(2)--------->ALFIN1----------->GT1  --------->ARR14(2)--------->REM1(2)     <---------DOF5.7(2) -->HSFC1(2)<-----------RAV1(1)  --------->AHL20(1)         <---------TGA1a         <---------ZAT18<-   tctggacttttaagctgtgggctcggaatgacgaaaatattctaggggattcttgtacgaacacgtgtatactttccattgagtagtgaacgtataagcg  25242000                                                                                       --------->AtLEC2 ---------TOE2(3)       <------NtERF2--------->TOE2(3)          ---------->DOF2       --------->TOE1(2) ---------TOE1(3)     <---------RAP2.6(2)                    --------->YAB1         ------->TEIL ----->DOF5.7(2)      --------->ETT(1)                  <---------ZAT18             <-------TEIL ---->TOE2(3)        --------->RAP2.6(3)--------->AHL20(2)--------->WOX13(1)    <---------TOE2(3)   - -------->DOF2<---------YAB1     <----------DOF2   <---------MYB52(1)          --------->MYB52(1)  -- --------DOF5.7(2) <-----------RAV1(1)  ---------->DOF2 ------------>CBF *TSS <---------ATHB12   ----   ttaaagtttttggattattttttgtcggccaaatactttcattaaaacagtccattagggcaattacaaagagaagcccaataacgtacatgcgaaataa  25242100                                                      ------>ZmHOX2a(2)                                                     --------->GLK1(1)                                                     <------ZmHOX2a(2)                                                    --------->ARR14(2)                                                    <---------ARR14(2)                                             <---------MYB52(1)         <-----------GT1                --------->TOE1(2)        <-----------GT1                 --------->TOE2(2)       --------->ZAT14                 --------->MYB46(3) --------->PCF5                        <---------HSFB2a(1) ----->NtERF2                          --------->HSFB2a(1)                         <----------DOF2  - ------->RAP2.6(2)                     <---------HSFC1(2)                  <------MYB46(1)     <----- ----->At4g35610                       --------->HSFC1(2)                  <------MYB83       <------   gcggcccagtttacccctctcgtactcttcagagagagagaacctccgttctccgatctccatcggagattagtatttggtttttcttttgttttccgtt  25242200  Previous    Next  AGI:  At1g67360.1    Description:  rubber elongation factor (REF) family protein. Identical to REF/SRPP-like protein At1g67360 [Arabidopsis Thaliana] (GB:Q9FYF7); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to unknown [Populus trichocarpa] (GB:ABK92674.1); contains InterPro domain Rubber elongation factor (InterPro:IPR008802) Range:  from: 25240474    to: 25241699    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g67365.1    Description:  other RNA Range:  from: 25242073    to: 25242898    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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