Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC58                                                                         --------->ANAC46                                                               ------>ZmHOX2a(2)                                                              <---------GLK1(1)                                                <-----------HVH21        ----------->HVH21                                         <---------YAB1      <---------AGP1   --------->ANAC58                                       --------->KAN4(1)     <---------ARR11(3)         <----------DOF2              <---------KAN4(2)      <---------ARR14(2)  <---------ARR14(2)         <---------DAG2           --------->ANAC46           --------->ARR14(2)--------->LBD16 ----ZmHOX2a(2)                   --------->ANAC58<---------WRKY38(1) -------->P --------->ARR14(2) ---->At4g35610                   --------->ANAC58<---------WRKY12 <---------MYB52(2) >MYB52(1)                      <-----------RAV1(2)         <---------CCA1(2) --------->ANAC46   atcacaaacctctttttcaagctctgaaattttctcaggcaatattcttgggtcatcgaactggatctcactaacccgacccgaaactggggtcaccatg  25159600                                                              ------>MYB83                                                              ------>MYB46(1)                                                   <---------DEAR3(2)                                        ---------->ID1--------->REM1(2)              <------NtERF2                                      <-----------RAV1(1)    --------->MYB52(1)      --------->ALFIN1                                   --------->ARR14(2) --------->ZAT14              <---------ANAC46                                   <---------ARR14(2)<---------REM1(1)             <---------ANAC58                             --------->ARR14(2)   <---------DEAR3(1)               <---------ANAC58                             --------->GLK1(2) <---------ANAC58                  ------->GAMYB       --------->ARR14(2)    ------->TEIL   <----------DOF2 --------->AtMYB61<---------WRKY12       <---------ARR14(2)    <---------ARR14(2)<---------ANAC58        <---------ALFIN1   tctaaaccggttccatgactagagccattcgaatctggatttgtcgctttcgtcggtgtagaccaacgttgccacaccttcaacggcgtggacatctctc  25159700                                 --------->TOE2(3)                                 <---------------AGL15                                 <---------MYB59                                 <---------MYB46(2)                                 --------------->AGL15                                <-----------------AGL1                                ----------------->AGL1                                <---------ANAC55(2)                                <-----------------AG                                ----------------->AG                                --------->ANAC55(2)                      ------>MYB46(1) <---------LBD16                      ------>MYB83 ------>MYB83                    <---------MYB59------>MYB46(1)            ------>ZmHOX2a(2)   <-----------------AGL3                            --------->ANAC58           <------ZmHOX2a(2)    ----------------->AGL3                            --------->ANAC58           --------->GLK1(1)    =====================================================================          <---------ARR14(2)    ----------------->AGL2                            --------->ANAC46          --------->ARR14(2)    <-----------------AGL2                          --------->MYB52(1)          <---------ARR11(3)  <-----------GT1                           --------->ANAC58          <---------AGP1 <----------DOF2                                --------->ANAC58            -          --------->ARR11(3)<---------ANAC58                --------->AHL20(2)---------->DOF2   <----         <---------CCA1(2)  <---------ANAC58      --------->ZAT6      ---------->DOF2       ---------   acaattcgcacagatctcaaaacctaactttcttacctaattcggaaattgaacacttgaaataaaaaacccagaagccaaaaaacgaaaccctctgact  25159800                                  --------->MYB52(1)                                 --------->AHL20(2)      <---------ZAT14            <---------AHL20(2)      --------->ZAT14           <---------ATHB12 --------->ETT(2)             <---------------AGL15                                      --------->HSFB2a(1) <---------ETT(2)         <-----------GT1            <---------DAG2           <---------ARR14(2) =============================================MADS_MADS                   <------NtERF2  <---------HSFC1(2) --------->ID1        --------->HSFB2a(1)            <----------DOF2      <---------LBD16--------->HSFC1(2) ------DOF2           <---------HSFB2a(1) --------->DAG2    <----------DOF2 --------->LBD16 -->HVH21            <---------KAN4(2)   ---------->DOF2    ------>ZmHOX2a(1) --------->ARR14(2)    <   ttgtcgacttcagtctctctgagaattttctccaattaatggataaagttggaagctttatcctttagagattggctccggatttgaacggagtttctaa  25159900                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                       <---------ANAC58          --------->ARR14(2)                                                      --------->ALFIN1          <---------ARR14(2)                                               <----------DOF2  <--------      ----------------->AGL1                                              --------->TOE2(3) ---------      <-----------------AGL1                                       <---------HSFB2a(2) <---------ANAC58     --------->SPL7                                                --------->HSFB2a(2) <---------ANAC46    --------->ARR14(2)                  --------->ANAC58         --------->ZAT2   <---------ANAC58   <---------MYB52(1)                   --------->ANAC58         --------->At4g35610  *TSS <---------ANAC46   <---------SPL7                       --------->ANAC46         <---------ZAT2   <-----------RAV1(1)  --------->LBD16                     ------>ZmHOX2a(1)        <---------ZAT14    <---------ANAC46  - ---------LBD16          <---------ETT(1)                      --------->ZAT14    <---------ANAC58---   attccggtaccgaaactggtttcaagtccgacaacgtttcctaagcaatctctctctctcttctctgtgctggaaacctttattgtgtggctcgcgcgga  25160000                                                                                    --------->ARR11(3)                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                                                                    <---------GLK1(2)                                                                           ------>NtERF2                                                                          --------->RAP2.3(3)                                                                          --------->DEAR3(1)                                                                         --------->ORA47(2)                                                                         --------->RAP2.3(1)                                                                         --------->ATERF1(1)                                                                         <------NtERF2                                                                         --------->DEAR4(2)                                                                        <---------At4g35610                                                                        --------->At4g35610                                      --------->TCP16(1)                <------NtERF2--------->ARR14(1)                                    --------->ZAT18                     <---------ATERF1(1)    <-----                                    <---------ZAT18                     ------>NtERF2--------->CCA1(2)  <---------DOF5.7(2)              --------->ALFIN1                    --------->RAP2.6(2)     ------ ---ZmHOX2a(2)                  --------->DAG2              <-----------------AGL1  --------->ARR11(1) -----ARR14(2)               <---------YAB1                <---------AHL20(2)   ---------->DOF2------ ---->ARR14(2)             --------->YAB1                  <-----------GT1--------->RAP2.3(2)  <----- -LBD16                <---------YAB1 --------->PCF5 <----------DOF2   <---------DEAR3(1)     <------ >LBD16     ---------->ID1<---------YAB1             <---------DAG2    --------->DEAR3(1)     <------ -------->DOF5.7(2)    <---------AHL20(2)         <-----------GT1     <---------RAP2.6(2) --------->HSFB2a(2) --->ZmHOX2a(2)<----------DOF2 ---------->DOF2<---------AHL20(2)      --------->ATERF1(1) <---------HSFB2a(2)   tcgttcacgttcttgttcttttttttttattataaaagtggaccctatatttttactttatttacatttttggccgccgtcttaaagatttgctcgaagg  25160100         <---------ARR14(2)         <---------AGP1                                                                             <       ----------->ARR10                                                                            - ----HSFB2a(1)                                                                                    --- --->HSFC1(2)                                                                                     <-- --->HSFB2a(1)       <-------GAMYB                   --------->ALFIN1                            <--- ----HSFC1(2)       <---------ANAC58 <---------ARR14(2)                                          ---- ---TOE1(2)         <---------ANAC58 --------->ARR14(2)       <----------DOF2     --------->ANAC46--- ---TOE2(2)     <---------GLK1(1)    <---------MYB52(1) ----------->GT1       <-----------GT1    <---   ttccaagggtagaactggaatttcgttggaattacaacggttatgcgttgtgcaagtgtggaaacttttgtaagacaaaaataccctctacaaaatgtaa  25160200                                <---------ARR14(2)                          --------->YAB1                          --------->ATHB12                          -------->HAHB4                         <---------YAB1                       <--------ATHB1                       <--------HAHB4                       -------->HAHB4                       --------->ATHB51                       --------->YAB1                       <---------ICU4                      --------->ICU4                                   --------->HSFB2a(1)       <---------ZAT6 <---------ATHB51                                 <---------HSFC1(2)   <---------YAB1     <---------YAB1                                  --------->ANAC58 --------->ATHB12     --------->AHL20(2)                              --------->ANAC58 <---------ICU4     --------->YAB1                                <---------TOE2(3) ---------YAB1     --------->AHL20(2)                             --------->HSFB2a(2) -------->ICU4     <---------AHL20(2)                   --------->ANAC46 ------>YAB1   <---------AHL20(2)           <---------AHL20(2)    <---------HSFB2a(2) -------ICU4   --------->AHL20(1)           --------->AHL20(2) <---------AHL20(2) ------YAB1--------->AHL20(2)   --------->ARR14(2)      --------->ANAC58       --------->AHL20(2) ----->ICU4<---------AHL20(2)  <------ZmHOX2a(1)     --------->ARR14(2)--------->HSFC1(2) ----->HAHB4   --------->AHL20(2)       ----------->GT1 --------->ANAC58    --------->TOE2(3) ------ATHB12  <---------AHL20(1)  ----------->HVH21 <---------ARR14(2)<---------HSFB2a(1)   tgatgattagtgtttaattaattaataattataggatttgactggtttaaatgtgaatacgaaaatttatggaagcatccataaattcgccgaaaataag  25160300                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                            <---------ARR11(3)                                            --------->AHL20(1)                            --------->ARR11(3)                                         --------->YAB1                            --------->GLK1(2)                                         <---------YAB1                           --------->RVE1(1)                                       <---------AHL20(2)                         --------->AHL20(2)                                   <---------AHL20(1)                    --------->AHL20(2)                                        --------->AHL20(1)                    <---------AHL20(2)                                       <---------AHL20(2)                --------->AHL20(2)                                           --------->YAB1               --------->AHL20(2)                                            --------->AHL20(2)               <---------AHL20(2)                                       <------ZmHOX2a(1) <---------AHL20(1)             --------->CCA1(2)                             <---------At5g28300<---------AHL20(2)   --   aaaaacatattttggatataaattaaaaaaaatctaatttttgtcaattttgtcttagaattacagcaaaaataggaaattatattttataataaatttt  25160400                                   --------->YAB1                             <---------ANAC46                             <---------ANAC58                    --------->AHL20(2)                             --------->ANAC55(2)                 <---------AHL20(2)                             <---------ANAC55(2)            <---------YAB1                        --------->ATHB51                 <---------AHL20(2)                        <---------ICU4                   --------->AHL20(2)                        --------->YAB1                   <---------YAB1---------->DOF2                       --------->ICU4                 <---------ARR11(3)                       <---------ATHB51               --------->AHL20(1)       ------->TEIL           <----------DOF2   <---------ANAC58         --------->AHL20(2)   --------->ARR11(3)     <----------DOF2   <---------ATHB12      <---------ICU4 --------->ICU4 <---------------AtSPL8  ------->TEIL ---------->DOF2    <---------YAB1<-----------GT1 --------->AHL20(2) ------->ANAC55(2)   --------->WOX13(1)     --------->AHL20(2) <---------YAB1  <-------TEIL ---------   catgtaacttttactttgaaagtcaattatggcgtgatcataaacaataaataccatatattattattaaaaaaaaagatgtacattttggaaatggata  25160500  Previous    Next  AGI:  At1g67230.1    Description:  LINC1 (LITTLE NUCLEI1). similar to LINC2 (LITTLE NUCLEI2), protein binding [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49297.1); similar to nuclear matrix constituent protein 1-like [Petroselinum crispum] (GB:BAF64424.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74873.1) Range:  from: 25154933    to: 25159986    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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