Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------YAB1                                  <---------YAB1                     --------->AHL20(2)                                <---------AHL20(2)                   <---------AHL20(2)                                --------->ATHB12                     <---------YAB1                               --------->AHL20(2)                 --------->AHL20(1)     --------->MYB52(1)        --------->ICU4                   --------->AHL20(1)    <---------WRKY38(1)      <---------ICU4                     <---------AHL20(1)    <---------WRKY12<---------AHL20(1)                         --------->AHL20(2)    ---------->CDC5 --------->AHL20(1)            --------->LBD16 <---------AHL20(1) ------->DOF2 ----------------->AGL3          <-----------GT1--------->AHL20(2)                    -- ->DOF2 ------->GAMYB<---------AHL20(2)<-----------GT1     --------->AHL20(2)                 -------   caaagctcaacgggcttccatatatatttcatatttattagtaactattttccccaaaaaaaaaaatatatattattagtaactacaaacaaacaaacaa  25057000                                                                        <---------YAB1 <-----------GT1                                                                       <---------AHL20(2)          <-                      --------->ARR11(3)                               --------->AHL20(2)     -------                      <---------ARR11(3)                             <---------YAB1 --------->YAB1 --                   <---------TOE2(3)                               <---------AHL20(2)  --------->YAB1                  ---------->DOF2<---------AHL20(2)          <----------DOF2     --------->ANAC46  --                 <---------AHL20(2)                        <---------HSFC1(2)    <---------ANAC55(2) --------->GT1   --------->AHL20(2)  <-----------GT1       --------->HSFC1(2)    --------->ANAC55(2) -->YAB1  --------->AtLEC2      --------->AHL20(2)        --------->GLK1(2)      --------->ANAC55(1)<   aatgtataaaccatgaaaattaaagattttaaaattttataactatacaaatagtatgagaagctttgtttatttttataaacacataataacagtttga  25057100           <---------------AGL15          --------->TOE2(3)        -------->P     --------->ANAC55(2)     <---------ANAC58     <---------ANAC58     <---------ANAC55(2)                     <---------ATHB51   --------->AHL20(2)                        --------->AHL20(2)   <-----------GT1                           <---------AHL20(2) --------AHL20(2)      ----------->ARR10    <---------AHL20(1) ---->GT1 <---------MYB59     --------->ANAC55(2) ------->ICU4      ----------->GT1         --------->YAB1                                         <-- ------->AHL20(2) <---------TOE2(3)  <-----------GT1--------->AtLEC2                <----------DOF2 ---------ICU4  ---------->DOF2     --------->AHL20(2)                 --------->YAB1           <----   aaaaattacttacctaaataaaggtaatattctcgtaatttactaaaataattcatacaaaatataaaaacaattacaaaactcttcttttttgggctct  25057200                                                                    --------->AHL20(2)                                                                   <---------AHL20(2)                                                                   --------->AHL20(1)                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)                                                          <-----------HVH21                                <---------------AGL15    --------->O2                                --------------->AGL15    --------->TGA1a--------->AHL20(2)   --------                               ----------------->AGL3    --------->ANAC58            --------->AHL20(1)                               ----------------->AGL2    --------->ANAC58            <---------AHL20(2)                               ----------------->AGL1    --------->ANAC46            --------->AHL20(2)                               <-----------------AGL2    <---------TGA1a<---------AHL20(2)   --------                            <---------GLK1(1)            --------->bZIP60(2)        --------->AHL20(2)                            --------->GLK1(1)            ============================================                         <---------YAB1                  --------->ANAC55(1)<---------AHL20(2)  ----- ---------GT1          <-----------GT1                  ------->TEIL<---------AHL20(2)<---------ICU4 ------DOF2         <---------ICU4                   --------->AtLEC2  <---------AHL20(2)    --------   ttacatcttatttatactttgaaaattacgatatccatttagagaaaaatataacatgcacgtcacaaatttatttattttttgaaaaaaattacacaca  25057300                                                          <---------GLK1(2)                                                         <---------At4g35610                                                         --------->At4g35610                                               ------>MYB46(1)                                             --------->AtMYB61                                    ---                                             --------->MYB46(3)                                  *TSS                                             <---------MYB59                                     <---                                          ------>NtERF2  --------->HSFC1(2)                    ------    <----------ID1              <---------YAB1 ------>MYB83                                   ------- ->ANAC46                <------------CBF--------->DEAR3(1)                                   <------ ->ANAC58         <---------ANAC46       <---------ETT(1)<---------HSFC1(2)                   <------ZmHOX2a(2) ======bZIP_DOF   <---------ANAC58<---------ARR11(3) --------->ANAC46                        -------- ----->DOF2       <---------ANAC58--------->ARR11(3) --------->ANAC58                        <------- ->ANAC58        --------->MYB52(2) ------>ZmHOX2a(2)--------->ANAC58    <-----------GT1     <-------   aagaaaacgacaacttcgttccttgttaattgttatgatctctccgaccaaacccaagcagcttctccctcttaaatacctcttccttcttctaagatct  25057400 ------>HSFB2a(2) ------LBD16 >ZmHOX2a(2)                                                               --------->MYB52(1) -->GLK1(1)                                                             <---------REM1(1) ---GLK1(1)                                                    <---------ANAC55(2) ->ARR11(3)  <----------DOF2                                   <---------ANAC46                   --- --ARR11(3)------->TEIL                                        <---------ANAC58                 ----- --AGP1--------------->AtSPL8                                  <---------ANAC58              --------   ctggaccattctgtactttccctcaaacccaaaacacattttgttttttgtttcccatctaaaatgcgtatgagttgtaacggatgtcgagttctacgaa  25057500                                                                         --------->DEAR3(1)                                                                        <------NtERF2                                                                    ------->GAMYB --------->ANAC58                                                                   --------->ANAC46                                                             --------->ANAC58     --------->ANAC46     ----------->GT1                                         --------->ANAC58     --------->ANAC58   <------NtERF2                                       ------->TEIL--------->ANAC58   <---------ZAT14                                    <---------GLK1(2)------>NtERF2   <---------At4g35610                            --------->At4g35610 <---------ALFIN1   --------->ZAT14                                <---------At4g35610 --------->DEAR3(1)   --------->At4g35610                            --------->LBD16  --------->ANAC58                 - ------>DAG2             --------->ARR11(3)   <---------ARR14(2) <---------ATERF1(1)               <- ----->DOF2              <---------ARR11(3)   --------->ARR14(2) --------->MYB52(1)               <-- ->ANAC46          --------->YAB1         <------ZmHOX2a(2)  --------->ANAC46    ------>ZmHOX2a(1)<--   aaggctgcagtgaaaactgtagcataagaccttgtcttcaatggatcaaatccgctgaatctcaagccaacgccaccgtcttcctcgccaagttttatgg  25057600     <---------PCF2                             ------>ZmHOX2a(1)   --------->LBD16                      --------->AtMYB61  <---------ANAC58                      <---------ALFIN1  <---------ANAC58                     --------->ZAT2  --------->ALFIN1                   <---------ALFIN1                                           ----- --------->SPL7                     --------->MYB46(3)                                      --------- -------->ALFIN1                 ------>ZmHOX2a(1)                         <---------YAB1  <---------YAB1 --------SPL7           <---------ALFIN1--------->DEAR3(1)           ------->TEIL          <---------TOE2(3) -------ANAC58      ------>ZmHOX2a(1)--------->AtMYB61              <---------AtLEC2       <---------TOE1(3) -------ANAC58------->TEIL       ----------->HVH21                --------->AtLEC2    <---------MYB46(3)   ccgtgcggggctcatgaacctcctcaacaccggtcctgaccacctccgtcctggtattcaaacttcccatgcatgttatgttttttgtttgttatggtta  25057700                                                    ------>ZmHOX2a(1)                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                  ----------->GT1                                                <---------ARR14(2)                  <------MYB46(1)                 --------->GLK1(2)              --------->ARR14(2)             <---------ICU4                <---------GLK1(2)               <---------ARR11(3)             <---------AHL20(2)             --------->ANAC58                   --------->ARR11(3)             <--------ATHB1             --------->ANAC46                <---------TOE1(2)                 --------->ATHB51             --------->ANAC58                <---------TOE2(2)                 --------->AHL20(2)         <---------HSFB2a(2)               --------->TOE1(2)                  <---------ATHB12      --------->ARR14(2)                   --------->TOE2(2)                  <---------ATHB51      <---------ARR14(2)              <------ZmHOX2a(1)                  <---------At4g35610      --------->ARR11(3)              ==================HOX2a_HOX2a     ------->TEIL<------MYB83    ----------->ARR10                 ===================HOX2a_HOX2a  <-------TEIL --------->MYB59 ---->MYB52(2)  --------->ARR14(2)  <---------TOE2(3)   <---------AHL20(2)    --------->ICU4 -->GT1  --------->HSFB2a(2)   <----------DOF2 <------ZmHOX2a(1)     --------->AtLEC2       <--------   attgcgaagttctggacggaatctctcatacatctttttaggaaacgtaggatcctgtttatttttctaacatgcatctaataatttggtaattttgttt  25057800                                                                          <-------GAMYB                                                                     --------->LBD16                                                                     <---------LBD16                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                   ============================HOX2a_HOX2a                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                  =============================HOX2a_HOX2a                                                                 <---------ARR14(2)                                                              --------->ANAC55(2)                                                    <---------ARR14(2)--------->ALFIN1                          <---------SPL7    =============================HOX2a_HOX2a                        <---------------AtSPL8 ----------->GT1--------->ANAC55(1)                     <---------YAB1         ==============================HOX2a_HOX2a                   --------->ATHB12         <------ZmHOX2a(1)<---------LBD16                  =================================HOX2a_HOX2a--------->ANAC46                  <---------YAB1       --------->LBD16     <---------ARR14(2)                  <------ZmHOX2a(2)   <---------ANAC58     --------->ARR14(2)                       =                 <---------ARR11(3)   <---------ANAC58    --------->CCA1(2)          <-----------RAV1(2)                 --------->ARR11(3)  <---------LBD16--------->ARR14(2)<---------MYB52(1)<------ZmHOX2a(1) -YAB1    <---------RVE1(1)  --------->ANAC46<---------ARR14(2)  --------->ARR14(2)<-----------HVH21<   gtttttgcagcgatatttagatcattgttgtacgaagcatgcgggaggattgtgaatccgatatacggatccgtggggttattgtggtcaggaaactggc  25057900  Previous    Next  AGI:  At1g67100.1    Description:  LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40). Identical to LOB domain-containing protein 40 (LBD40) [Arabidopsis Thaliana] (GB:Q9ZW96;GB:Q0WN06;GB:Q53XE6); similar to LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) [Arabidopsis thaliana] (TAIR:AT3G02550.1); similar to At1g67100-like protein [Arabidopsis lyrata subsp. petraea] (GB:ABY59244.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 25057397    to: 25058510    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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