Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                                                     <                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             -           <-----------RAV1(1)   --------->AHL20(2)           <---------AHL20(2)              <------ ------->DOF2--------->ALFIN1<---------YAB1                  --------->AHL20(2)             ---------   aaaagactccttgctgtggcacagtaatcttacaattaaaaacacaatgtgaacttatccatatttaatatgttcaattgtgttttgagtctaaagattg  24960800               <----------DOF2               <---------DAG2      <---------AHL20(1)      --------->AHL20(2)      --------->AHL20(1)                                                       <---------ANAC58      <---------AHL20(2)                                           <---------ANAC55(2)     <---------AHL20(2)                                            <---------ANAC46     --------->AHL20(2)              ----------->GT1               <---------ANAC58 <---------AHL20(2)                <---------ANAC58           ----------->GT1  <---------ANAC46 ---------AHL20(2)                 <---------ANAC46  --------->HSFB2a(2)       <---------ANAC55(1) -------->AHL20(2)                 <---------ANAC58  <---------HSFB2a(2)       <---------ANAC58 ---WOX13(1)<-----------GT1 <----------DOF2         <---------ETT(2)         <-----------GT1 >ATHB12<------------------------ANAC81     >>>>>>>>>>>>>>>>>LFY   <---------ANAC58<---------ZAT6   <   attttaattttattttactttttttgttttctttatagcttgtataaaccaatgtcgagaaatattgttacttatgttattacttgtgttaattttgttt  24960900                                                                   <---------MYB52(1)                                                                  <-------GAMYB                                                                 <---------MYB46(3)                                                               <------NtERF2                                                              <---------RAP2.6(3)                                                              ------>NtERF2                                                              --------->LBD16           <---------------AtSPL8                            <---------ATERF1(2)           <---------------AtSPL3                            <---------RAP2.6(2)           --------------->AtSPL8                   ---------->ID1<---------At4g35610          --------------------->WRI1            <----------DOF2<---------MYB52(1)      <---------AHL20(2)                 <---------ANAC58    --------->ATERF1(2)      --------->AHL20(2)                 <---------ANAC58   --------->RAP2.6(3)    <----------DOF2                      --------->ANAC55(2)<---------LBD16 ---------GLK1(2)                      <-----------GT1<----------DOF2             --------->REM1(1) -   catattctttaaatttgtacttatctctgacttaattagttttacgtcttctttttctttttgccggcagttgtttagtcttctacatccactattttag  24961000                              --------->At4g35610                            <---------ICU4                            --------->YAB1                         --------->YAB1                         ------->GAMYB                                                            ---                        --------->MYB46(3)                                                   --------                      <-----------GT1                                                 --------->DAG2                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             ================                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        --------->At4g35610                   --------->YAB1                                         --------->ARR11(3) --------              <---------AHL20(2)                 ----------->GT1          <---------ARR11(3) --------              --------->AHL20(2) --------->At4g35610              --------->At4g35610---------->DOF2    --------->WOX13(1)--------->YAB1             <----------ID1<------NtERF2--------->YAB1<---------ARR14(2)  <---------ATHB12--------->AHL20(2)           ---------->DOF2------>NtERF2<---------YAB1 --------->ARR14(2) -------->WOX13(1)<---------AHL20(2)  --------->AHL20(2)   --------->At4g35610--------->At4g35610 ---   agcaatcagtcatctattaattaataaccatcatcagcaaaaaaatacaaaaagaaaaattcgctggcatcttaaatatcatcagcgaaaagtatacgac  24961100                         ------>MYB46(1)                         ------>MYB83                         --------->ARR14(2)                         <---------ARR14(2)                ------->MYC4                ------->MYC3                <-------MYC4                <-------PIF5                ------->MYC2                ------->PIF5                <-------MYC2                <-------MYC3               --------->O2               --------->TGA1a               <---------TGA1a                               <---------DAG2               <---------ANAC46                        <-----------GT1               <--------ABF1                       ------>ZmHOX2a(1)   <---------ICU4   <-----------GT1              --------->YAB1                      <--------HAHB4 ------>ANAC58 <---------ANAC55(2)             <---------ARR14(2)                    <---------ICU4 ->ANAC46 --------->ANAC46                     --------->ARR14(2)       <-----------GT1<---------YAB1 ========================bZIP_DOF           <------NtERF2 <---------ALFIN1  --------->ANAC46       -- ->ANAC58 --------->ANAC58                  ------------>CBF --------->TOE2(3)       --------->YAB1-- ->ANAC58 --------->ANAC58                  ----------------->AGL1   <----------DOF2<---------YAB1 -- ------>ANAC58 <---------O2                ------>NtERF2 --------->MYB46(3)------->GAMYB<---------ICU4   actcattcttacaagccacgtgtaacctatcttcttcaagaatggtgccaatcctagtcaccaccttattcctttaaccctccactatcattactactca  24961200              --------->ANAC58              --------->ANAC58                                                                     --     ---------->DOF2   ------>MYB83 --------->ANAC58                ------>MYB83                   --  --------->ANAC58     ------>MYB46(1)                            <---------MYB59                 <--  --------->ANAC58    --------->WOX13(1)   --------->ZAT14        --------->AtMYB61               --- ------->ANAC58      --------->AtMYB61     <---------ZAT14  --------->ANAC46                  <------ ------->ANAC46      *TSS     <---------ATHB12    --------->GLK1(1) ------>MYB46(1) ---------->DOF2-- ------->ANAC58     ------------>CBF--------->ANAC58<------ZmHOX2a(2) --------->MYB46(3)    <--------   cacgaagcaaagaatcacccaaaccaatccaaatgatcaagacagtacacagagatcgaaacacaaaaccaaaccaatgtctctgcaaaagtttaagctt  24961300                                                                  ---------->DOF2                                                               ----------->GT1                                                             ------>NtERF2                                                            --------->RAP2.3(2)                                                            --------->RAP2.3(3)                                                            --------->RRTF1(3)                                              <---------ATHB12<------NtERF2                                          <---------ZAT18   --------->DEAR3(1)              <---------ALFIN1            <---------ZAT14  --------->ATERF1(1)             --------->At4g35610          --------->ZAT14  --------->RAP2.3(1)             --------->ZAT2         <---------O2          ------>NtERF2      --------->ATHB12              <---------ANAC55(2)   --------->LBD16      <---------ICU4                --------->ANAC55(2)   <---------ATERF1(1)     <-----------GT1 ------->ANAC58                     --------->ANAC46     --------->ANAC46      <---------MYB46(3) ------->ANAC46                --------->ANAC46          --------->DEAR3(1)    --------->MYB52(2) -------HSFB2a(2)              <---------ETT(1)       <---------ALFIN1       <---------MYB52(1) ------>HSFB2a(2) <-----------HVH21 --------->ANAC58  --------->AtMYB61    <---------ANAC46        xx ---GLK1(2)  <---------ZAT2    ----------->HVH21   <---------ALFIN1        <---------ANAC58     ----- ------->ANAC58  --------->DEAR3(1) --------->ANAC58  --------->DEAR3(1)   <---------ANAC58   ------- -TOE1(3)    <---------At4g35610  <---------ALFIN1--------->MYB46(3)      ------>NtERF2      <------ZmHOX2a(2)   ctcgcaactcattgcagcaccgtcgcagagagtccgacacgtagtccagtcatccacctccgccgtcgtaaaacgctgcgtttgttactcactcgatcat  24961400                                                                                     <---------HSFC1(2)                                                                                     --------->ZAT2                                                                                     --------->HSFC1(2)                                                                                     <---------ZAT2                                                                                  <------NtERF2                                                                                 --------->LBD16<----                                                                          <------ZmHOX2a(2)    ======                                                                         <---------ARR14(2)    ------                     <------ZmHOX2a(2)                                   --------->ARR14(2)   <------ZmHOX2a(2)                     --------->CCA1(2)                                   --------->AGP1       <------                    <---------ARR11(3)                                ------>ZmHOX2a(2)      --------                    <---------ARR14(2)                               --------->ARR14(1)      --------                    --------->AGP1                                   <------ZmHOX2a(2)       --------                    --------->ARR14(2)                               --------->CCA1(2)       <-------                    --------->ARR11(3)                              --------->ARR11(3)       <-------                   --------->GLK1(1)                                --------->ARR14(2)       <-------                   <---------GLK1(1)                                --------->AGP1<---------MYB52(1)              <---------LBD16                                       <---------ARR14(2)      --------- xxxxxxxxxxxxxx>smallRNA(s)  --------->MYB52(1)                   ----------->ARR10  <---------HSFB2a(1) ---->At4g35610 --------->LBD16                  --------->MYB52(1) <---------ARR11(3)      <-------- -->YAB1     --------->MYB52(1)         ------->TEIL          ----------->GT1  <---------LBD16=======   cagaccgatggagattaccggagatccaaaacaacgtagatgaatcgaagaaaacggataagagaggtaagatccgatctagccggaagcttggagatct  24961500                                            <------NtERF2                                          <---------DEAR3(1)                                          <---------ANAC46                                         <---------LBD16                                         --------->ATERF1(1)                                         <---------ABI4(1)                                         <---------At4g35610                                         --------->At4g35610                                         <------NtERF2                                        <---------RRTF1(1)                                        <---------RAP2.3(1)                                        <---------ORA47(2)                                        ------>NtERF2                                        <---------DEAR4(2)                                        <---------ATERF1(1)                                       <---------ATERF1(2)                                       <---------RRTF1(2)                                       <---------ANAC46                                       --------->ALFIN1                                       --------->DEAR3(1)                                       <---------DEAR3(1)                                       <---------RRTF1(3)                                       <---------RAP2.3(2)                                       <---------RAP2.3(3)                                       --------->ATERF1(2)                                      <------NtERF2                                      --------->DREB2C(1)                                      <---------ABI4(1)                                      --------->RAP2.3(1)                                      --------->ATERF1(1)                                      --------->At4g35610                                      <---------At4g35610                                     <---------RRTF1(1)                                     <---------RAP2.3(1)                                     <---------RAP2.6(1)                                     <---------ATERF1(1)                                     <---------ERF1                                     <---------DEAR4(2)                                     <---------ORA47(2)                                    <---------ANAC58                                    <---------ANAC58                                    <---------RAP2.3(3)                                    <---------RRTF1(3)                                    <---------RRTF1(2)                                    <---------DEAR3(1)                                    <---------DREB2C(2)                                    --------->ATERF1(2)                                    <---------ATERF1(2)                                    <---------ANAC46                                    <---------RAP2.3(2)                                    <---------RAP2.6(2)                                   --------->ATERF1(1)                                   <------NtERF2                                  <---------MYB46(3)                                  --------->ABI4(2)                                  <---------ATERF1(1)                                  ------>NtERF2                                 ----------->HVH21                                 --------->ALFIN1                                 <---------DEAR3(1)                                <------NtERF2                                --------->ATERF1(1)                                <---------ABI4(1)                                <-------GAMYB----------->ARR10                               <---------RAP2.3(1)          <------NtERF2        <---------ATERF1(1)          --------->ATERF1(1)  <---------MYB46(3)        --------->ANAC46      <---------ANAC58       ---------->ID1         <---------ANAC46     <---------ANAC58         <---------DREB2C(2)     <---------ANAC58         <---------DEAR3(1) ------DOF2            ---------->DOF2--------->DEAR4(2) ============================HOX2a_HOX2a<---------ERF1 >ZmHOX2a(2)        <---------TOE2(3)------>NtERF2 ---RVE1(1)     <---------MYB52(1)<---------ERF1 ->ARR14(2)  <------NtERF2    <---------RAP2.6(2) ->ARR11(3)  <-----------------AG<---------AtMYB61                                               ---- ->ARR14(3)  <-----------------AGL1<---------ABI4(1)                                          ------- --ARR14(3) ------>NtERF2     <---------DEAR4(1)     <----------ID1                           <------ --ARR14(2)--------->DEAR3(1) <---------ANAC58    --------->DAG2                             <------- --ARR11(3)<---------ALFIN1--------->ALFIN1--------->LBD16                                   <------- >GLK1(1)<---------ATERF1(1) <---------ABI4(1)  --------->CCA1(2)                      ------->TEIL -GLK1(1)------>NtERF2<------ZmHOX2a(1)<---------RAP2.6(2)          --------->ALFIN1   --------->MYB52(1) ============================HOX2a_HOX2a<---------RAP2.6(1)      <---------AtMYB61   <---------SPL7   ttttgtttcgtcgccaccgtttgaggaaagtggcggtggcggcggcggagataaggggacgaagatggaggtggagatggagagggatgtaccggttaac  24961600                                               --------->ZAT18                                               <---------ZAT18                                              --------->ALFIN1                                             --------->REM1(2)                                            --------->ALFIN1    <---------MYB52(1)                                          <---------ANAC58     <-------GAMYB      --------->YAB1                      <---------ANAC46     <-----------HVH21   ----------->GT1                        <---------ANAC58    <---------MYB46(3) <---------MYB52(1)                      <------NtERF2     <---------ARR14(2) --->GAMYB                             <---------DEAR3(1)  --------->ARR14(2) --------->At4g35610 -->MYB52(1)                           ---------->CDC5<---------DOF5.7(2)     <---------At4g35610 ---DOF5.7(2) <---------TOE2(2)  --------->RAP2.6(3) ----------->HVH21    <-----------HVH21 --WRKY38(1)  <---------TOE1(2) <---------DOF5.7(2) --------->DOF5.7(2)  --------->bZIP60(2) --WRKY12    <-----------RAV1(2)--------->MYB52(1) <----------DOF2--------->MYB59            <-------   ggcgttagtaataacgcaggttttggagaagagataacggctcggcgtgtgggctttaacgggtctgttaggcccatgtcatctgttacacttcgatgta  24961700  Previous    Next  AGI:  At1g66890.1    Description:  similar to 50S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT5G16200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81684.1) Range:  from: 24961221    to: 24961777    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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