Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  ---                                                                                               <-----                                                                                               <-----                                                                      --------->ANAC55(2)    <-------                                                                      <---------ANAC55(2)   <--------                                                              ----------->RAV1(1)           ---------                                                           --------->ANAC46               --------->ALFIN1 --------->YAB1                                      --------->AHL20(2)               <---------ANAC58 ---------AHL20(2)<---------AHL20(2)              --------->ANAC55(2)--------->MYB59  <---------ANAC58 ------>YAB1    <----------DOF2<---------YAB1 <----------DOF2<----------ID1<---------ATHB12<---------ZAT14   aaataatagtagaaccctcttttatttatacttatacttgatcatatactttacataatataaacaacaaataggtaatcaattttgttcgtgtgtggtg  24887200                                                                                  <--------ATHB1        <------ZmHOX2a(1)           <----------DOF2                   --------->ANAC58      --------->MYB59              <---------DAG2                     --------->ANAC58    <---------MYB52(1)           <---------ARR11(3)        --------->ANAC46       <---------ICU4   <-------GAMYB                 --------->ARR11(3)        ----------->HVH21      -------->ATHB1 -------ETT(2)            --------->AHL20(2)               --------->ANAC58       --------->ATHB51  < ------>ETT(2)           --------->AHL20(2)                --------->ANAC58       --------->YAB1<---- ----ANAC46         <------ZmHOX2a(2)                    <---------ALFIN1        <---------ATHB51  <- ----REM1(1)       <---------ARR11(3)                   --------->TOE1(2) -------->P            <<<<< --ANAC46          --------->ARR11(3)                 --------->PCF2  --------->ANAC46     --------->ANAC46 -AtMYB61    <-----------GT1 ---------->DOF2 ---------->DOF2      ------->GAMYB  <---------ATHB12---- >ALFIN1===================HOX2a_HOX2a      <---------ATHB12     --------->ANAC46--------->ICU4 <<<<<   tagacagttaggatttaacaagatcaaataaaaaagaccttttcaaatcaagccgagacccacgacaacgacacactaccccaataattgtttacacaat  24887300                                                                                             <-------                                                                                            <--------                                                                                            <------MYB83                                                                                            <------MYB46(1)                                                                                     <-----------TGA1                                                                                     <-----------HVH21                                                                                    --------->ANAC55(1)          <---------MYB52(2)                                                        --------->ANAC58          <---------MYB55(2)                                                        --------->ANAC46        ------>MYB46(1)                                                             --------->ANAC55(2)        ------>MYB83                                                                --------->ANAC58        --------->MYB52(1)                                                          --------->bZIP60(2)       --------->MYB55(1) <---------ARR14(2)                                        --------->O2      <---------MYB55(2)  <---------ARR11(1)                                        <---------O2      --------->MYB46(3)  --------->ARR14(2)                                      <---------ALFIN1     --------->ANAC46  <---------ANAC58                                       <---------ANAC58 ------     --------->ANAC58  --------->ANAC55(2)                                    <---------ANAC58 <-----     --------->ANAC58  <---------ANAC55(2)                                    <---------ANAC46 ------ ---------ICU4         <---------ANAC58                                      --------------->AtSPL3 -----ATHB12--------->MYB52(1)                                               --------------->AtSPL8 --------YAB1 --------->MYB46(3)                   <---------TOE2(3)   ----------------------->TaNAC69(2) <<<<ARR1 --------->MYB46(3)                       <---------TOE1(3)----------->GT1<-----------STF1 ----->YAB1------->GAMYB <---------CCA1(2)    ================================================bZIP_DOF <<<<ARR2 ----------->HVH21                   <----------DOF2      <---------TOE2(3)--------->TGA1a   cataaatacccaacgaccggccaatgcgtatccactagtgaattgatacttttaaggttaagagaaaatgaggtttattttcgtacacgtcatttggtgt  24887400                                                       <---------ZAT18                                                     --------->ANAC46                                                     --------->bZIP60(2)                                                     --------->ANAC58         <---------RVE1(1)                                                     --------->ANAC58         <---------CCA1(1)                                               <---------MYB52(2)            <---------ARR11(3) --------AtSPL8                              <-----------GT1                 --------->ARR11(3) -ANAC46<---------ALFIN1                   <---------AHL20(2)          ------->GAMYB <---------AtLEC2 --->ZAT18                                --------->YAB1             --------->At4g35610 ----ZAT14                      --------->HSFB2a(2)  --------->ANAC55(1)     <---------GLK1(2) --->ZAT14                      <---------HSFB2a(2) <---------LBD16  <---------At4g35610   actgtctcgaccacattcacatgttttctgaggtcgagaaactattttaactaacacggcacttaaaattcaactgcaagattttttgaatggaagactt  24887500                ---------->DOF2                                               --------->YAB1              --------->YAB1                                                  <-----------GT1             <---------ATHB12                                                <---------YAB1           ------>MYB46(1)          ----------->GT1                      <---------GLK1(2)           ------>MYB83          ---------->DOF2                  <------NtERF2         <---------MYB59       <---------YAB1                   <---------ANAC46      <-----------GT1        --------->YAB1     ----------->TBP <---------ANAC58   <---------ICU4      <---------At4g35610  ----------->GT1     <---------ANAC58              *TSS   attagttattaccaaatcaaaagtcttctgatcatcaaaggaaaattagtataaataagcatagaggcgtccatggattatcacagttctcatcaaatat  24887600                                                                                                <----                                                                                          <------MYB46(1)                                                                                          <------MYB83                                                                                         <---------AtMYB61                                                                                         <---------MYB46(3)                                                              <---------ZAT18           <---------WOX13(1)                                                              --------->ZAT18         --------->ATHB12                           ----------->GT1              <------ZmHOX2a(2)            --------->ICU4                 --------->DAG2                        <---------ARR11(3)            <---------YAB1                ---------->DOF2    ---------->DOF2     --------->ARR11(3)        --------->ARR11(3)   ttgaaagtatcaaacaaaaaaaggagagtgagaaaaataaagagagagatagagagagatcatgtccactactcaagagcataggtcttgattggtggaa  24887700                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                ----------->GT1   ------>MYB83                              <---------MYB52(1)  ------>MYB46(1)                             --------->LBD16xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <---------LBD16  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     --------->AtMYB61      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   ------>MYB83 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   ------>MYB46(1)          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <x      --------------------->WRI1<---------MYB46(3)-------->P                            <------ZmHOX2a(1)      --------->TOE2(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------->GAMYB <---------ALFIN1        --      --------->TOE1(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC46          --------->LBD16    ------->TEIL--------->DEAR3(2)          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->ANAC46 --------->ANAC58 --------->ORA47(1)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------HSFB2a(2) --------->ANAC58--------->DEAR3(1)        xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         --------->HSFB2a(2) ------ARF1     --------->MYB46(3)  --------->AHL20(2)      --------->MYB46(3)       <---------LBD16   gacaagtaccttagataaaccgaccaaaacccggtggataaaatcgagttccaacctcttcaacgacaacgatttcaacactctcttccaggaacaactt  24887800                                       --------->LBD16                                       ------>ZmHOX2a(1)                                   --------->ARR14(2)                <---------ZAT14    <---------ARR14(2)       --------->At4g35610      --------->LBD16       <---------At4g35610 <---------GLK1(1)   --------->AtLEC2        --------->GLK1(1)                                           <------------- <-----------RAV1(2)--------->ALFIN1  --------->TOE1(2)                               ------->TEIL xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->LBD16           ---------->DOF2       <-------GAMYB ---->ZmHOX2a(1)---------->DOF2<---------LBD16          --------->YAB1 <---------MYB52(1)     <------   cctccaggcagatgatactaaagtgctggagttcccggttcctgagagtgagtccatatcaaaatgcgcattcgttatcacttggttgaacccatttggg  24887900                                           <---------O2                                           --------->O2                         <---------ANAC55(2)                                            --------->ZAT14             ----------->HVH21             <---------ANAC46            <-----------HVH21<---------ZAT14 --------->AHL20(2)      --------->ANAC46------>ZmHOX2a(1)           --------->ANAC58 <---------LBD16 <---------AHL20(2)      --------->ANAC55(2)                 <------ZmHOX2a(1)     <---------At5g28300 ----AGL1   ----------------------->TaNAC69(2)  --------->ARR14(2)   --------->ANAC58 --------->ZAT18 ---LBD16  ----------->GT1    <---------WOX13(1)<---------ARR14(2)--------->ZAT18 --------->MYB52(1)   gatttaaatttggaggtgaaatggaacgcgtaattgatgactcctacgtggaacctcttcttaggaagagcacggtcgaagaagtaactgcgcagtgctt  24888000                                                xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                               xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxsmallRNA(i)                          <xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      XXXXXXXXXXXXXXXXXXXXXXX>MIR163--------->LBD16                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ARR14(2)                <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->CCA1(2)           ---------->DOF2<------ZmHOX2a(1)  <-----------GT1     <---------GLK1(2)       <---------ARR14(2)   aaatcgtagatgctaaagtcgttgaagaggacttggaacttcgatattatcccccgtgttttgtccagtttctctataggttgtgcctgaaaatatgggt  24888100  Previous    Next  AGI:  At1g66725.1    Description:  MIR163; miRNA Range:  from: 24887594    to: 24888222    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version