Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->LBD16                                          <------ZmHOX2a(1)                <---------ANAC58                                        xxxxxxxxxxxxxxxx>smallRNA(i)                <---------ANAC58                                      xxxxxxxxxxxxxxxx>smallRNA(i)                --------->HSFB2a(2)                                   xxxxxxxxxxxxxxxx>smallRNA(s)                <---------ANAC46                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------HSFB2a(2)                   <---------TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(i)               <---------LBD16                   -------->ATHB1 <---------ICU4                     --       <-----------ARR10      <---------HSFB2a(2)<---------ICU4 -------->ATHB1                    <--       --------->ARR11(3)     --------->HSFB2a(2)--------->ATHB12    XXXXXXXXXXXXXXXXXXXXXXX>MIR163--       <---------ARR11(3)    <---------ANAC46   <---------ATHB12--------->ATHB12                 <---       --------->ARR14(2)<---------HSFC1(2)     --------->ICU4 <---------ATHB12                ------       <---------ARR14(2)--------->HSFC1(2)     <---------YAB1 --------->ICU4                <------- ------->At4g35610  --------->ALFIN1    --------->ALFIN1       <---------YAB1                --------   gcgctgaagtatcttcttccgggtggaagtgtctggaagagagtgttgaaatcattgaggctgaaatcattgaagaggacttggaactcgatgttatctg  24878000                                                                              <---------ALFIN1                                                                             --------->ZAT18                                                                          <------MYB83                                                                          <------MYB46(1)         ---           <---------MYB52(1)                                            --------->MYB111(1)      ---        <---------LBD16                                                  --------->MYB46(2)      ---- ---->NtERF2                                                             --------->MYB59      <------ -------ANAC46                                                        <-----------HVH21       ------- ------->LBD16            <---------DAG2                             <---------ZAT6          <------- ------LBD16              <----------DOF2       <---------YAB1   ---------->DOF2       --------->MYB52(1) ----->HVH21        --------->ANAC46          --------->YAB1 ----------->RAV1(1)      --------->MYB46(3) --At4g35610--------->ARR14(2)          ------->TEIL    --------->At4g35610  <-------TEIL ------->GAMYB ->At4g35610<---------ARR14(2)      --------->ANAC46    <---------At4g35610  <---------ZAT18 --------   ccgggttttgtccggtttctctacggtacttttcttctaccgcatctattatgttttgaactgccacaaaagtgttaggtccacttgcacaaccgaaatc  24878100                                                                       ---------->ID1      ---------->DOF2                                                <-----------RAV1(1)     <---------ATHB12                                              <----------DOF2 ------>LBD16                                           <<<<<<<<<<WRKY43 ------>At4g35610                                       <<<<<<<<<<WRKY26 ----->ANAC46                                   ------>ZmHOX2a(2)  ------>ZmHOX2a(1) ---ARR14(2)                                    ==========================HOX2a_HOX2a -->ARR14(2)                                   <------ZmHOX2a(2)---------->ID1 --GLK1(1)                                     ===========================HOX2a_HOX2a ->GLK1(1)                          --------->ARR14(2)  <<<<<<<<<<WRKY38   cgctacaatgaagcgattcgaaatcaagtctaggtcgagattggctgagatcgccttggtcatcttgtcctttgtcgcttccaacaatgctctctgtata  24878200                   --------->ANAC46                  <-------TEIL                 <-----------GT1              --------->AHL20(1)              --------->ARR11(3)              <---------ARR11(3)                                                            ---------             --------->AHL20(2)                                                             <--------          <---------AHL20(2)                                                                <------MYB46(1)         --------->AHL20(2)                                               ----------->RAV1(2)<-------GAMYB      <---------CCA1(1)                                           <---------YAB1 <---------TOE2(1)      <---------RVE1(1)                                         --------->AHL20(2)          <------MYB83     <---------ARR14(2)                                         <---------AHL20(2)      <---------MYB46(3)     <---------ARR11(3)                                         --------->YAB1   <---------TOE1(1)     --------->ARR11(3)    <------ZmHOX2a(1)               <---------ATHB12    --------->CCA1(2)  <--   ----------->ARR10  --------->ATHB12            <------ZmHOX2a(1)      ------->TEIL<------ZmHOX2a(1)   tagagaagatattaaatatatacatcataggaattaagaacatagataactaggaatgcaaatcatttatatttgaacctgatacgaggattgttggtta  24878300                                <---------ARR14(2)                             ------>ZmHOX2a(2)                       <---------ICU4                       --------->YAB1                      --------->ICU4                      <---------ATHB12               <---------ARR11(3)                    --------->WOX13(1)               --------->ARR11(3)                 ===================HOX2a_HOX2a     <---------GLK1(1)             <---------AHL20(2)       <------ZmHOX2a(1) <---------YAB1             --------->GLK1(1)        <---------ARR11(3) -->GT1=============================HOX2a_HOX2a  <---------YAB1              --------->GLK1(2) -MYB46(3)       ------>ZmHOX2a(1)             --------->YAB1   <----------DOF2 <----------DOF2 ---------GT1--------->ARR14(2) --------->ARR14(2) <---------ARR11(3)        --------->ARR11(3) <----   taactctcaggaccgtctcctccaatcatgatccaatctggagtagtagtcatgatatctctctctcttttttctcaaaaatcttttattgtttgatact  24878400                                                                                                   <-                                                                                                   --                                                             --------->LBD16                   ------                                                            <---------ANAC55(2)                <-----                  --------->YAB1                       <---------KAN4(1)                       <-----                 <---------ZAT6                        --------->KAN4(1)                 --------->YAB1               ----------->GT1                    ----------->GT1         ------------>CBF    -------             --------->ZAT14                 <-----------TBP<---------ANAC58       <---------------AGL15        <---------YAB1                   <---------ANAC58   <---------ANAC58       --------------->AGL15      --------->YAB1  --------->GLK1(2)  <---------ANAC58   <---------ANAC55(1)    ==================     <---------YAB1  *TSS                <---------ANAC46   --------->ANAC55(2)  <---------At5g28300< ------DOF2  <---------ZAT14  ------->TEIL <-----------TBP  <---------ANAC46    <-----------GT1------   ttggtttatgatgagagtagtgataatccatggacctctcgatgcttatatatagtaatattccgtgttcttaaaaaacaatttactgtaatgagaataa  24878500                                    <---------GLK1(2)                                   <---------At4g35610     --------->CCA1(2)             <------NtERF2                                                    -    --------->ARR11(3)             <---------ZAT2   <---------At4g35610     <---------ANAC46       --    --------->AHL20(1)             --------->At4g35610                      <---------ANAC58       --   --------->AHL20(2)              --------->HSFB2a(1)              ------->GAMYB                  -- --------AHL20(2)                  <---------HSFC1(2)              <---------MYB55(2)              <- ------->AHL20(2)                  <---------HSFB2a(1)          <---------ETT(2)                   -- --->AHL20(2)                 --------->DAG2        --------->At4g35610     <---------ANAC58       <- ----AHL20(2)               ---------->DOF2        ------->TEIL <---------WRKY12                  --- ----AHL20(1)          --------->AHL20(2)   --------------->AGL15  --------->MYB46(3)            ---- -->AHL20(2)           --------->YAB1       <---------------AGL15  <---------MYB52(2)           ----- ===========================================================MADS_MADS--------->MYB52(1)         ----- ---------AHL20(2)    <---------ATHB12   <-----------GT1        <---------WRKY38(1)         <-------- --->AHL20(1)     ------------>CBF --------->HSFC1(2)          --------->WRKY18(1)        --------->YAB1   attaaatatatggaacgtcgtccaattaaaaaaaggcagcttcttactatatgaagctgaatgcggtcaacaaacgttgcttatatgacaaattataagt  24878600                                   <-----------GT1                              <---------AHL20(2)          <-----------RAV1(2) --------->AHL20(2)        ----------->RAV1(1)   --------->YAB1 <------NtERF2             --------->YAB1 ----->NtERF2             <---------AHL20(2)         ----------->GT1 ------->ANAC58           --------->AHL20(2)        <---------TOE1(3) ------->ANAC58           --------->ICU4            <---------TOE2(3) ------->ATERF1(2)        <---------ATHB51         ---------->DOF2 --------RAP2.6(2)       <---------AHL20(1)     <----------DOF2 ------->bZIP60(1)    --------->AHL20(2)       ------>ZmHOX2a(2) --------bZIP60(1)   <---------AHL20(2)       <------ZmHOX2a(2) ------>RAP2.6(3)   --------->AHL20(2)       --------->ARR11(3) ----->MYB52(1)     <---------AHL20(2)       --------->AGP1 ------>HVH21 ----------->GT1<---------YAB1  <---------ARR11(3)  <---------AHL20(2)              <--- ------>TGA1----------->GT1<---------ICU4    <---------AGP1     --------->AHL20(2)               <--- -YAB1 ----------->HVH21--------->YAB1      <---------CCA1(2) --------->TOE2(3)            <---------TOE2(3)   gacggcattgcgacaggtgtaatttaaaataattatatgaccacatagatctttaaagttaaaacattaaatatagtttggaaaatgaagtataagatta  24878700                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                   <---------AHL20(2)                                                           --------->AHL20(2)      --------->AHL20(2)                                                       <---------AHL20(2)         <---------AHL20(2)                                                       --------->AHL20(2)         --------->AHL20(2)                                                      <---------AHL20(2)      <---------AHL20(2)  <--                                                   --------->AHL20(2)         <---------YAB1     <---                                                   <---------AHL20(2)        <---------AHL20(2)------                                                   <---------AHL20(1)    <---------CCA1(1)     <-----                                                   --------->AHL20(1)    <---------RVE1(1)     <-----                                                --------->YAB1          <---------ARR11(3)     ------    ------->TEIL                               <---------AHL20(2)      --------->YAB1         ------- ------TOE2(3)  <---------TOE2(3)             --------->AHL20(2)      <---------YAB1  <---------AHL20(2) ------ANAC55(2)--------->DAG2       ----------->GT1  --------->AHL20(2)--------->ARR11(3)    <------   agtatgaaactgaagtataaggtgaagtatgaaatgtttcagtaaatttttaataaattaataaactaaactatgatatttttattaatttatagaatta  24878800      <---------ZAT6 --------AHL20(2) ------->AHL20(2)                   --------->LBD16 ------>AHL20(2)                   ----------->GT1 -------AHL20(2)                  <---------LBD16                   --------->ARR11(3) ------YAB1              <---------AHL20(2)                         <---------ARR11(3) -->ATHB1                --------->AHL20(2)                         <---------ARR14(2) ----ICU4               --------->AHL20(1)                 --------->ARR11(3) ---HAHB4               <---------AHL20(1)             --------->YAB1--------->CCA1(2)              < --->ATHB51             <---------AHL20(2)        <---------TOE2(3) --------->ARR14(2)              - -->ICU4                --------->AHL20(2) ----------->GT1<---------GLK1(2)              --------->At4g35610 ---YAB1               --------->AHL20(2) <---------TOE2(3)--------->GLK1(2)      <-----------RAV1(2)   ttaatttagtgatatatactcgaaaattaatttagaaccggaaaaaggttttaagaattagaatcttggagatatgtcaatgtaacaggcgagatgaaat  24878900  Previous    Next  AGI:  At1g66700.1    Description:  PXMT1; S-adenosylmethionine-dependent methyltransferase. similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G66690.1); similar to AtPP protein [Brassica napus var. napus] (GB:CAB89183.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299) Range:  from: 24876954    to: 24878421    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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