Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <-----------GT1                   --------->TGA2(1)                   --------->bZIP60(1)                                             ----------->GT1                   <---------TGA2(1)                                              ----------->GT1          <---------YAB1                                            <---------ARR14(2) ----->ANAC58      <---------bZIP60(1)                              --------->ARR14(2) ----->ANAC58   <---------YAB1                                     <------ZmHOX2a(1) ---->DOF2<---------AHL20(2)  <---------YAB1             --------->YAB1       ---------->DOF2   agcaaattcaatttcattgtgatatcaccaatttgattatctatgaagaaccaattctaacataacacaggatttgaagagaaaggggaaatttttgaga  24869000                                              <---------ANAC46                                     ----------->RAV1(1)                            --------->WRKY12 <---------MYB46(3)                            ----------->HVH21<------MYB83<---------ARR11(3)                     -----               ---------->DOF2<---------LBD16<------MYB46(1)                                   ------   --------->TOE1(2)      <----------DOF2   <---------AtMYB61                                  ------   --------->TOE2(2)   --------->GLK1(2)   <--------P    --------->ARR11(3)        <------ZmHOX2a(1)  ----------->RAV1(2) <---------GLK1(2)  <-----------RAV1(1)        --------->TOE1(2)        --------   agaaacctgagaacccaaaaagacgattctttgacggagcaacatgttggtggtatcgagttcttcgaaacttgggagtcttgaaggagattgagcaacg  24869100                                                                                   ---------->DOF2                                                                               --------->ANAC58                                                   <---------MYB46(3)          --------->ANAC58                                                   <------MYB46(1)             --------->ANAC46                                                  <---------AtMYB61          ------>MYB46(1)                                     <---------TOE1(3)                      --------->MYB55(1) --------->ATHB12                    --------->DAG2<------MYB83            <---------MYB59 -->GAMYB --------->GLK1(2)    --------------->AGL15                     <---------ARR11(3) --->ANAC58                    <---------------AGL15         --------->ANAC58------>MYB83 --->ANAC58       <-------TEIL<-----------------AGL2 <---------ANAC46    --------->ARR11(3) ->MYB52(1)      --------->CCA1(2)   <---------TOE2(3)       --------->ANAC58--------->MYB52(1)   gaatcaatggagaagctagatacatcccagttactagataaggtttgtctgggtggtttagacaagctcattgaagacctaacgcaaaagggtttcgaag  24869200                                <---------TOE2(3)                    --------->ARR14(2)                    <---------ARR14(2)                                                   --------->ANAC46                 <---------ANAC46                                    <---------TOE2(3)   --------->ANAC58                <-----------------AGL1     --------->LBD16           <---------TOE1(3)   --------->ANAC58           <---------TOE2(3)    <---------TOE1(3)              <---------ANAC58 ---------->DOF2      --------->GLK1(2)----------->GT1    <---------LBD16      <---------ANAC58<---------REM1(1)   --   ttttagggattctatggtttcggattgggaaattaaggttttttccagggtttagtagacaaattgggtttgaggttgaagatgaagcgagacgcaaact  24869300                                                                            ----------->HVH21                                                                          <---------At4g35610                                                                          --------->At4g35610                                                            <------ZmHOX2a(1)                                                      ---------->DOF2    --------->MYB52(1)                                             <---------RVE1(1)        --------->ANAC58               <-----------RAV1(1)           <---------CCA1(1)        --------->ANAC58     <---------HSFB2a(2)          <----------DOF2                   --------->ARR11(3)      ---------->DOF2        --------->HSFB2a(2) ------->At4g35610 <---------MYB46(3)       <---------ARR11(3)   *TSS--------->DAG2       <---------LBD16   catctccattgtctttggtgttggatgttttttttttgagttctgagattttttgctaaagaggatgaagaaaagcaactgatgggactgtttctggatg  24869400                                                 ------------>CBF                                             --------------->AtSPL3             <-----------GT1                                             --------------->AtSPL8          <-----------GT1     <---              <-------TEIL                   <---------------AtSPL8    <---------YAB1          ------        ------>ZmHOX2a(1)               --------->AtLEC2         <---------ANAC46             -------       --------->TOE2(3)          <---------ANAC58               <---------ANAC58             <------       --------->TOE1(3)          <---------ANAC58               <---------ANAC55(1)    --------->YAB1    <-----------GT1         <---------MYB52(1)----------->GT1    <---------ANAC58    <----------DOF2   tttttttttccttagattcaaaacgctgtcgttttttcgtccatggaaatgtacaattttgtgtctaacgtgtatgatttttctactcttttataagatt  24869500 --------->ANAC46                                                                          --------->DOF5.7(2) --------GT1            --------->TOE2(3)                                           --------->AHL20(2) --->CCA1(2)     --------->TOE2(3)                                         --------->REM1(1) -->ARR11(3)     --------->YAB1                                       <---------YAB1<---------AHL20(2) ---ARR11(3)     --------->TOE1(3)                                 <---------AHL20(2)      <---------MYB52(1)   tacacattacaagtttcaatcttaaacatcaaactcaagtactaacttccaattctaacaattttggattttatgcttcaacttgtttaattcgttatct  24869600                                                                                                 <---                                                  --------->LBD16                               -----                                        --------->LBD16                                   --------->ZAT14                                    --------->GLK1(2)                                     <---------ZAT14                                    --------->ARR14(2)                                    <---------At4g35610                                    <---------ARR14(2)          --------->KAN4(1)    <---------ZAT14                                   --------->RVE1(1)            <---------KAN4(1)    --------->ZAT14                                 --------->AHL20(2)            <---------KAN4(2)  <---------ANAC46                         --------->WOX13(1)      --------->ANAC46 --------->GLK1(2)  --------->ZAT18   aataactaagaaaatgtaagagtgtttcaatccaaaaaaatccgagtttatccgaaacaaaatcgaataatctaatctaatatggagtagactgcagatt  24869700                                                                   <<<<<<<<<GATA-2             <---------YAB1                                        <<<<<<<<<GATA-3        <------MYB46(1)                                            <<<<<<<<<GATA-1        <------MYB83                                               <<<<<<<<<GATA-4       --------->MYB59                                            <---------ARR14(2)    <---------SPL7                                                --------->ARR14(2)   <---------MYB46(3)               <---------DEAR3(2)--------->ANAC58  --------->ALFIN1                ---------->ID1      --------->ANAC58                             <- ------AHL20(2)             <----------DOF2   <----------DOF2----------->GT1                 <------- ---->AHL20(2)   --------->YAB1 <-----------RAV1(1)   --------->ANAC46  <---------ATHB12 <-----------GT1   aaatgtggttcggttctaatagtaatctttctttttgtcggttttattcttttttcaaggaacaagtgaatccactcattttgttttcaaattactaatt  24869800                                                                                     <---------------AGL15                                                                            <---------ATHB12     <---                                    --------->TOE2(3)                     ------>MYB46(1)     <------                              <----------DOF2 ---------->DOF2             ------>MYB83        ------- ---------DOF2                --------->TOE2(3) ----------->GT1         <---------MYB59   ---------->DOF2 --ICU4             ----------->HVH21     ---------->DOF2    ----------->HVH21       --------------->AGL15   tctttgatttttgaattagtctatgacacatactttaacatcaaaaaagaaagaaaaaaaacactgacatatgaccaaatcagttttctcttaaaagaac  24869900  Previous    Next  AGI:  At1g66670.1    Description:  CLPP3 (Clp protease proteolytic subunit 3); endopeptidase Clp. Identical to ATP-dependent Clp protease proteolytic subunit 3, chloroplast precursor (CLPP3) [Arabidopsis Thaliana] (GB:Q9SXJ6;GB:O82421;GB:Q94JY6); similar to CLPP4 (Clp protease proteolytic subunit 4), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT5G45390.1); similar to ClpP putative protein [Brassica napus] (GB:CAC80640.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 24867448    to: 24869365    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g66680.1    Description:  AR401. similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to SLL2-S9-protein [Brassica rapa] (GB:BAA77395.1); similar to SLL2 (GB:AAB49423.1); contains InterPro domain Methyltransferase type 12 (InterPro:IPR013217) Range:  from: 24869758    to: 24872655    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version