Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ----------->HVH21                           --------->YAB1                          <---------YAB1--------->TOE2(3)                          <---------AHL20(2)                       <---------ARR11(3)                       --------->ARR11(3)                       <---------AHL20(1)                                         <---------YAB1                --------->At4g35610<-----------HVH21                         --------->ANAC58           --------->WOX13(1)   --------->At4g35610                          --------->ANAC58       --------->ZAT6  --------->AHL20(1)                                ------>MYB46(1)  <----------DOF2      --------->AHL20(2)                                ------>MYB83------->TEIL --------->TOE2(3)     <---------AHL20(2)         <---------YAB1       <---------MYB59 --------->TOE1(3)    --------->AHL20(2)<---------MYB59                --------->TOE2(3)          <--   aaacctttaacaccaattagctaaatatattataagctgtgacctaaatgttcttattctgcaattccattaacctaataagctatgaatctacaaattg  24866600                                                      <---------ANAC58                                                      <---------ANAC58                          -----                                                      <---------ANAC46                      ---------                                                     --------->ATHB12                       <--------                        ---------->DOF2      <------MYB46(1)                                ---------                     ------->TEIL            <------MYB83                              ----------->RAV1(2)                  <---------YAB1           <---------WOX13(1)                          --------->At4g35610              --------->ARR11(3)         --------->ATHB12                <------ZmHOX2a(1)  <-------- -------YAB1<---------YAB1             <---------WOX13(1)<---------MYB46(3)     <---------HSFB2a(2)   attatacaaatatgaagattatgaatcaaagaagaaacctgatagattggtctcttgagtggttcacaacaagtaggacaatcgagaacatctgagctct  24866700          <--------P         <---------MYB52(1)  <-----------HVH21                                                    <<<<<<<<<TBF1 ------>HVH21    --------->ATHB12                                     <------------------------ANAC81 >At4g35610 <------MYB83         <---------GLK1(2)                  <<<<<<<<<TBF1 -At4g35610 <------MYB46(1)   <---------HSFB2a(2)             <<<<<<<<<TBF1 >ZAT2  <---------MYB46(3)    --------->HSFB2a(2)<-----------GT1 <<<<<<<<<TBF1        ------>ZmHOX2a(1) -ZAT2<---------LBD16   <------ZmHOX2a(1) <---------ICU4   <<<<<<<<<TBF1     ---------->ID1       <<<   gaagcttcaccggttgggatgatttaggacttccagattgttcatcagtagtaacgttttcttcttcttcttcttcttcgtcttcttcctcttctaattc  24866800                                                                <---------ANAC58                                                                <---------ANAC58                                                  --------->ARR14(2)                                                  <---------ARR11(1)         --------------------->WRI1               <---------ARR14(2)       <<<<<<<<<TBF1                             <---------CCA1(2)    <<<<<<<<<TBF1                     <-----------GT1         <-----------GT1 <<<<<<<<<TBF1                     --------->ARR14(2)         <---------AHL20(2)   <---------LBD16 <<<<<<TBF1        <<<<<<<<<TBF1   <---------ARR14(2) ------>ZmHOX2a(1)       --------->MYB46(3) ----   ttcttcttcttcttcgaattcttcttcatcttcttcgaattctccatcttcgtatccttctaaattacttggctcttcgaacaactctgggtctaattcc  24866900                                                         <------NtERF2                                                        ------>NtERF2               =================                                                        --------->LBD16             ------>ZmHOX2a(2)                                                        <---------DEAR3(2)          =================                                                        <---------ATERF1(1)        ==================                                                       --------->DEAR3(1)          ==================                                                       <---------DEAR3(1)          <------ZmHOX2a(2)                                                       --------->ATERF1(2)        --------->ARR14(3)                                                       <---------ATERF1(2)        <-----------ARR10                                                      --------->DEAR4(2)          --------->ARR11(3)                                                      --------->RAP2.3(1)         <---------ARR14(3)                                                      <------NtERF2               --------->AGP1                                                      <---------LBD16             <---------ARR14(2)                                                     <---------ATERF1(1)          --------->ARR14(2)                                                     <---------RAP2.3(1)          <---------ARR11(3)                                                     ------>NtERF2                <---------AGP1                                                    --------->ETT(2)             <---------CCA1(2)                                                    <---------DEAR3(1)         --------->HSFB2a(2)                                                    <---------ETT(2)         =============HOX2a_HOX2a                                                  <-----------HVH21          ------>ZmHOX2a(1)            --------->LBD16                --------->CCA1(2)             <---------ARR14(2)       <--          <---------LBD16       ----------------->AGL1--------->ATERF1(1)--------->ARR14(2)      <---      <-------TEIL         <---------MYB46(3)    <-----------RAV1(1)   <---------DEAR3(2)      ------    <---------GLK1(2) <------ZmHOX2a(1)--------->HSFB2a(2)           <---------MYB52(1)       ------- -->ZmHOX2a(1)     <------ZmHOX2a(1)   <---------HSFB2a(2) <----------DOF2   ==============HOX2a_HOX2a   tcttcagattcatcgggagaaggaggaagtcgttgcctcttcgagagacgactgtcgccggctctatgtccgtcgtttcctccagatcttgccattccta  24867000                                  --------->ARR11(3)                               *TSS                              <---------At4g35610                      <---------ATERF1(1)                      ------>NtERF2                                                            ------       --------------------->WRI1 <---------ARR11(3)                                           ------      ----------->HVH21<------NtERF2                                                         ------>MYB46(1)    ------>ZmHOX2a(1)--------->ATERF1(2)                                                     ------>MYB83 ==========HOX2a_HOX2a--------->LBD16                                                       --------- =HOX2a_HOX2a        <---------ATERF1(2)                                                <-----------GT1 =HOX2a_HOX2a        <---------DEAR3(1)                                              --------->TOE2(3) ==========HOX2a_HOX2a<---------DEAR3(2)         <---------ANAC58                  ------>MYB46(1) -------ARR11(3)     --------->DEAR3(1)          <---------ANAC58                  ------>MYB83------ ------CCA1(2)      --------->ATERF1(1)       <----------DOF2                    <---------MYB59 >ZmHOX2a(1)        <---------LBD16 ------>ZmHOX2a(2)--------->AHL20(2)         --------->MYB46(3) -->TOE2(3)        <---------RAP2.3(1)       <----------DOF2              --------->At4g35610--------   aatctcctccgatggggttttcgccggctctatgctgatcttatgggcctttcgttttaatatgggggttttgagtagccgaaccaaacttaaccaaacg  24867100                     <------MYB83                     <---------MYB46(3)                     <------MYB46(1)                    <---------------AtSPL3     <---------GLK1(2)                                                                    --------->ANAC58     <---------ARR11(3)                                                                   --------->ANAC58     --------->ARR11(3)    <---------At4g35610                                          --------->LBD16   ----------->ARR10<---------AtMYB61                                             --------->SPL7   <---------TOE2(3)--------->MYB59                                             <---------ZAT18 --->ANAC58       <---------MYB52(1)             <--------P                    <---------ANAC58 --->ANAC46       xxxxxxxxxxxxxxxx>smallRNA(s)  <-------GAMYB                  --------->ANAC55(2) >MYB55(1)      <------MYB83                   <---------MYB46(3)              <---------ANAC55(2) --->ANAC58     <------MYB46(1)             --------->ZAT2                     <---------ANAC46     < ->MYB52(1)    --------->MYB59              <---------ZAT2                     <---------ANAC58     -   gaactaagatttttggttcggtttggttcggctactcaaaaccccaagctggttgagttctgctagactgcatgagaggttgcgtacttccgaagccata  24867200                 --------->ANAC58                 --------->ANAC46                 --------->ANAC58                                                   ------->GAMYB              --------->ARR14(2)                                         --------->LBD16        --------->At4g35610                                  ------>ZmHOX2a(1)     --------->MYB46(3)        <---------At4g35610                                  <---------YAB1       -------->P        --------->ZAT2                                      --------->TOE2(3)   --------->MYB46(3)        <---------ZAT2        <----------DOF2           --------->YAB1  <---------HSFC1(1)     ---------->DOF2--------->DEAR3(1)                 <---------ATHB12 --------->HSFB2a(2)         - -------TEIL----------->ARR10 ------>ZmHOX2a(1)    --------->YAB1       <---------HSFB2a(2)         - -------->ZAT18<---------ALFIN1   ---------->DOF2 <<<<<<<<<ARR2         --------->HSFC1(1)         --   ggtgcaatacagctcagacacgccctcgagtcctttgaaagcctgaactacaatcaaatcatcctcattgtcttccagaaaaacaaccatcttcttctta  24867300                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                         --------->TOE1(1)                       <---              <---------TOE2(3)                     <---------ARR14(2)                          <----         ===========================HOX2a_HOX2a     <---------ARR11(3)                          -----         <------ZmHOX2a(1)                          --------->ARR14(2)                 <----------DOF2       <---------TOE2(3)                            --------->ARR11(3)           <---------AtLEC2<---     ---------->DOF2    =====================================HOX2a_HOX2a      --------->YAB1   <-----  --------->TOE2(3)     <------ZmHOX2a(1) --------->ICU4------>ZmHOX2a(1)  <---------ICU4     <------ ----->MYB46(1)--------->ICU4<------ZmHOX2a(2)    ----------->ARR10 <---------ZAT6    <---------ANAC58 ----->MYB83 ---------->DOF2 ==================================HOX2a_HOX2a--------->ICU4      ------- --------->RAV1(1)  ---------->DOF2     --------->YAB1------>ZmHOX2a(2) --------->YAB1<---------ANAC58   ccaacattaaaggattaaagattaaaggacgatcaaacacaaacatgatgagatgatcctcgttccaagagtgttcataatgagcatggcttttgggatc  24867400                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                            ---------         --------->MYB52(1)                                                               --------->TOE2(3) ------>LBD16                                                                            --------->YAB1 ------ANAC55(2)                                                                         <---------ICU4 ------ANAC46                                                                            <--------HAHB4 ------ANAC55(1)                                                                     --------->AHL20(2) ------ANAC58               --------->ZAT14                                          <---------AHL20(2) -------------------TaNAC69(2) --------->ANAC46                       <---------ANAC58  --------->ICU4 ->ZmHOX2a(2)          --------->ZAT14                                <---------ANAC58  <---------ATHB12 ------ANAC58          <---------ZAT14                                <---------ANAC46  <---------YAB1 -ZmHOX2a(2)  <---------ARR14(2)    --------->ANAC58        <---------GLK1(2)       <---------AHL20(2) ---ARR14(2)  --------->ARR14(2)    --------->ANAC58     --------->DAG2             --------->AHL20(2) -->ARR14(2)  ------->TEIL  <---------ZAT14             ---------->DOF2    <---------YAB1--------->ATHB12   cgtgtaagagccaacgtatttgcagtttagtacagggcaagaacattgggcgaaaacaaaaagcttctcatggcttgatgattcaatttaatcattaaat  24867500  Previous    Next  AGI:  At1g66660.1    Description:  seven in absentia (SINA) protein, putative. Identical to E3 ubiquitin-protein ligase SINA-like 5 [Arabidopsis Thaliana] (GB:Q7XA77;GB:Q9C511); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66650.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 24865539    to: 24867031    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g66670.1    Description:  CLPP3 (Clp protease proteolytic subunit 3); endopeptidase Clp. Identical to ATP-dependent Clp protease proteolytic subunit 3, chloroplast precursor (CLPP3) [Arabidopsis Thaliana] (GB:Q9SXJ6;GB:O82421;GB:Q94JY6); similar to CLPP4 (Clp protease proteolytic subunit 4), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT5G45390.1); similar to ClpP putative protein [Brassica napus] (GB:CAC80640.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 24867448    to: 24869365    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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