Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ---------->DOF2                                                <---------ZAT6                                         --------------->AGL15             --------->GLK1(2)           =========================================================MADS_MADS        <-------TEIL                     <---------------AGL15       --------->CCA1(2)                --------->MYB46(3)                        ===================      --------->ARR14(2)               --------->ANAC58                     <---------ANAC58        -      <---------ARR14(2)          <---------At4g35610           <----------DOF2   <---------------AGL15     <------ZmHOX2a(1)     <-----------GT1--------->WOX13(1)   <---------DAG2     --------------->AGL15 ---------->DOF2      <---------DAG2   --------->ANAC58     <-----------GT1 <---------ANAC58  ------- ----->YAB1 <---------GLK1(2)     --------->At4g35610--------->DAG2  <-----------GT1         --------   cataaaaggatacagaaactgtaaccttttaacttaagctcaaccaattagagataaagttatgacctttttaacttggcttaaccaattggagataaag  24865100                                                                   >>>>>>>>>TBF1              <------MYB83                                                       --------->MYB52(1)                 --------->ATHB12                                                    --------->TOE2(3)             --------->GLK1(2)            <---------YAB1                          --------->TOE1(3)            <---------GLK1(2)     <----------DOF2                              <-----------------AG>>>>>>>>>TBF1 --------->TOE1(3) ===================================================================MADS_MADS    <---------ARR14(2) ---------->HVH21                                 <-----------------AGL1 >>>>>>>>>TBF1 ---------->DOF2 -->DAG2  --------->YAB1                      --------->ANAC46------------------------>ANAC81 <------MYB46(1) -->DOF2 <---------YAB1                     <-----------GT1 ---------->DOF2      --------->ARR14(2)   ttgtgacctttattatacttgagcgaaaaacttctcatttgcaatttcactaaaccctaatggaaagaagaagaagaagaacagaacctgaaagattggt  24865200                                             <---------HSFB2a(2)                                            <---------LBD16                                         <---------ARR14(2)                                         --------->ARR14(2)    <---------ANAC58                                   --------->TOE1(2)           <---------ANAC58                                   --------->KAN4(2)      --------->ARR14(2)                                  <---------HSFB2a(1)     <---------ARR14(2)                                  --------->HSFC1(2)   --------->ANAC55(2)                                  --------->KAN4(1)    <---------ANAC55(2)                                  <---------KAN4(1)    <---------ANAC46             --------->ANAC46     --------->HSFB2a(1) <---------LBD16             --------->ANAC58     <---------HSFC1(2) --------->MYB52(1)         <---------MYB52(1)             --------->ANAC58    <---------KAN4(2)<---------ZAT6       <-----------GT1 <---------AtLEC2   tttttcaatgggtcgaagcaattgggacattcaagaacattcgaattcgggagagttacggatttgggtgatgaaaccctccgttttctgcatgttcgaa  24865300                                                                                             <-------                                       --------->YAB1                                     <---------MYB46(3)                              --------->ARR14(2)                               --------->LBD16  -----                              <---------GLK1(2)                               --------->LBD16--------                  --------->YAB1      <---------YAB1                          --------->ANAC46 <-----                 <---------YAB1--------->GLK1(2)    --------->AtMYB61         <---------LBD16--------           ----------->GT1    <---------ARR14(2)  ----------->RAV1(1)        <---------LBD16<------NtERF2 --------->ARR11(3)       ------>ZmHOX2a(1)    --------->ANAC58              --------->LBD16--------- <---------ARR11(3)    ------>ZmHOX2a(1)       --------->ANAC58        <<<<<<<<<TBF1      <---------DEAR3(1)   gaacatctccgagcggtttatcatcctcctcagaatcgctatcatcggtaagcaccacaagggttttctcttcttcttccccgggactagggtcgtcgac  24865400                                                             <---------ANAC58                                                ------>ZmHOX2a(1)  <-----------------AGL1                                         <---------DAG2      <---------ANAC55(1)          --------->ANAC58               <----------DOF2     --------->ANAC55(2)          --------->ANAC46              <---------ANAC46     <---------ANAC46         --------->ZAT18                <---------ANAC58  <---------MYB52(1)       xxxxxxxxxxxxxxxx>smallRNA(s) --DEAR3(1)                             <---------ANAC58 <-------GAMYB          <---------At4g35610 ---->ANAC46    --------->WRKY38(1)    <------NtERF2    <---------MYB46(3)      --------->At4g35610 ->DEAR3(1)    <---------MYB52(1)     ------>NtERF2   <-----------HVH21     <-----------TGA1 ----LBD16--------->ANAC58    --------->At4g35610     --------->LBD16       <-----------HVH21 ->ETT(2)--------->SPL7   <---------MYB52(1) <-----------GT1 <---------ANAC58   <---------CCA1(2) >ATERF1(1)   <-------GAMYB   <---------At4g35610  ------>ZmHOX2a(1)----------------->AG   ggaaacagaagtacgccgttgcctcttcgttgagctacggtggctttttcctcctccgtcgttgcgtcttcccaatttcgtcatctctccctctccctct  24865500                                                              ------>MYB46(1)                                                              ------>MYB83                                                       <------MYB46(1)                                                       <---------DEAR3(2)                     <------                                       <---------TOE2(3)    <---------MYB111(1)         ------------>CBF                                       <---------YAB1  <------MYB83                ------------>CBF                                ----------->GT1       --------->MYB59           --------->LBD16     <     ------>NtERF2            <---------ANAC46        --------------->AtSPL8   --------->ANAC46<-----    --------->ANAC46     <------------CBF             --------------->AtSPL3  <---------LBD16--------   ctctctcggccactacttaatgagacatattgaagtgtattaagtttgagttcaagtcggtaccaactaaatcagtcgaacccggaccaatacaattaac  24865600                                                       ------->GAMYB                                                      <---------MYB55(2)                                                      <---------MYB52(2)                                                      --------->MYB46(3)    --------->ZAT6                                  --------->MYB52(1) -----GT1              --------->ANAC46            --------->TOE1(2) ---------AHL20(2)     --------->ANAC55(2)        --------->MYB46(3)                    ---------->DOF2 ----TOE2(3)         <-----------GT1          <---------YAB1                    --------->At4g35610 ->YAB1    ---------->DOF2       ---------->DOF2  ------>ZmHOX2a(2)        <---------YAB1    <-------   attttatctctaaaaaagaattttcacataacacatgaagcagggtttatgatccaacgaccgtctacttctaagttataagagcagagcaaaagaattg  24865700                                           ------------>CBF                                  <---------CCA1(2)                                --------->AHL20(2)                           <---------AHL20(2)       <-----------ARR10                           --------->AHL20(1)       --------->GLK1(2)                           <---------AHL20(1)       --------->ARR14(2)                    ----------->GT1       --------->ANAC58                 --------->At4g35610                  --------->At4g35610     --------->ANAC58 <---------At4g35610          --------->ARR14(2)    <---------AHL20(2)  <---------ARR14(2)    --------->DEAR3(1)          <---------GLK1(2)--------->AHL20(2)      <---------GLK1(1)    <---------At5g28300        --          <---------ARR14(2)  --------->AHL20(2)   <---------CCA1(2) <-----------HVH21        ------- <----------DOF2  <---------At4g35610     --------->ANAC46------->TEIL <---------WRKY38(1)    <------ -----CBF<------ZmHOX2a(1)--------->AHL20(2)   --------->AtLEC2     <---------MYB46(3)      <------NtERF2   agactttgagaggattcttcagatgtgaataaatttatatccataggcaatgcaaatctgcatcttccagtggtcaccgctcaacattttaggcggtatc  24865800                                                                  --------->TOE2(3)                                                           <------ZmHOX2a(2)                                                           ===============HOX2a_HOX2a                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                         ------->GAMYB                                                        --------->MYB46(3)                                                        <---------ATHB12         --------->At4g35610                           ------>MYB46(1)  <---------ZAT18    --------->ANAC58                                   ------>MYB83------>ZmHOX2a(1)    --------->ANAC58                                  --------->MYB52(1)--------->ZAT14 ------->ANAC46                              <-----------GT1 <---------ALFIN1 -->ARR14(2)         ------->TEIL  <---------DAG2    --------->DEAR3(1) --------->ZAT18 --------->At4g35610 ---ARR14(2)       <-------TEIL    <----------DOF2  --------->MYB46(3)  <---------ZAT14 <---------At4g35610   cacatcaagtcatcttcaagatgcattttctctctcactttctgaattttcttcaccaacgatccactccttagtgtgctatactcgttgagcttagcca  24865900                       --------->LBD16                      --------->ANAC46                      --------->LBD16                     <---------HSFB2a(2)                     <---------LBD16                 <---------ARR14(2)                 --------->ARR14(2)              --------->ANAC58              <---------ANAC55(2)              --------->ANAC55(2)              <---------ANAC46              --------->ANAC55(1)              --------->ANAC58          <-----------HVH21                           <---------ANAC55(2)                          <-         --------->bZIP60(2)                 <---------ETT(2)                                     <--         --------->ANAC58                    --------->ETT(2)                                 -------         --------->ANAC46          --------->ZAT18<-----------HVH21                        --------->WOX13(1)         --------->ANAC58 ------>NtERF2      ----------->HVH21   ------>MYB46(1)          --------->MYB46(3)    ----------->HVH21--------->HSFB2a(2)   <-------GAMYB         ------>MYB83---------->DOF2 <<<<<<<<   aactacatgacaagtcacgtattcccggagccatatgtgcaatacggttgacagtcacataaacaccttccaatcccttgaaagcctgaacaacaatcaa  24866000  Previous    Next  AGI:  At1g66650.1    Description:  seven in absentia (SINA) protein, putative. Identical to E3 ubiquitin-protein ligase SINA-like 4 [Arabidopsis Thaliana] (GB:Q9C9M0;GB:Q9C6H0); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G37930.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 24863776    to: 24865484    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g66660.1    Description:  seven in absentia (SINA) protein, putative. Identical to E3 ubiquitin-protein ligase SINA-like 5 [Arabidopsis Thaliana] (GB:Q7XA77;GB:Q9C511); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66650.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 24865539    to: 24867031    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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