Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------MYB52(1)                                 <---------ZAT14               <-----------HVH21 ------>HSFB2a(2)                                       --------->ZAT14            ------>ZmHOX2a(1) -------HSFB2a(2)      ---------->DOF2            --------->TOE2(3)                <----------DOF2 ----YAB1            ---------->DOF2         <---------ANAC58          --------->ANAC58 --ICU4--------->MYB52(2)               <---------MYB46(3)             --------->ANAC46 -MYB52(1)<-----------GT1 --------->ZAT18    <---------ANAC58          --------->ANAC58   ctagaccgatagttaccaattgccaaagagcagtaagggcatttgttacttacattagtacagcaagaagaacaagctatatgtcctttgtcacactgag  24854700                                  --------->ANAC46           <---------MYB55(2)                               <-------TEIL XXXXXXXXXXXXXXXXXXXX>MIR865-3P                              --------->CCA1(2)              --------->MYB46(3)                             --------->ARR14(2)     <---------ARR11(3)                         ------                             <---------ARR14(2)--------->LBD16                        ---------->DOF2   acacaaaaaactcacaatacttagttattcagatacaaacaacattttccccaaaatcatccaactactgtaatgaaattgaaatttgtaaagcatgaat  24854800                             --------->ANAC58                         --------->ANAC58                         --------->ANAC58               --------->AtMYB61                 --------->MYB46(3)              --------->YAB1                        ----------->GT1     --------->MYB59   ---------->DOF2    --------->LBD16  ----------->RAV1(1)    ----------->GT1 ->TEIL      --------->ZAT14 --------->ANAC58  <---------ARR11(3)                --------->ALFIN1   ttttagttaagtcactgtaatcaccaaaagcaaacaacattttccccaaaatcataaaccacaacaaatattcaaaactctgagtggtgaagtaagaaga  24854900                                                        ------>ZmHOX2a(2)                                                       --------->CCA1(2)                                                       <------ZmHOX2a(2)                                                      --------->AGP1                      <----------                                                      --------->ARR14(2)          --------->SPL7                                                      <---------ARR11(3)       ------>ZmHOX2a(2)                                                      --------->ARR11(3)       ======================                           <-------GAMYB              <---------ARR14(2)      =======================                          ----------->GT1             <---------AGP1          <---------------AtSPL3                          <---------ANAC58            <---------ARR14(3)      --------------->AtSPL8                          <---------ANAC58          ----------->ARR10         --------------->AtSPL3                         --------->ZAT18        <---------HSFB2a(2)           <------ZmHOX2a(2)              <------ZmHOX2a(1) --------------->AGL15 --------->ARR14(3)     --------->ARR14(2)           --------->CCA1(2)   --------->REM1(1)--------->HSFB2a(2)          <---------ARR14(2)      ---------->DOF2    <---------ZAT18 <------ZmHOX2a(1)            <-----------HVH21<---------ALFIN1    ----------->HVH21 <---------ANAC58   ======================HOX2a_HOX2a   <---------ARR11(3)   <-- <---------ARR11(3)   <---------ANAC58   =====================HOX2a_HOX2a <---------HSFB2a(2)   ----- --------->ARR11(3)  <---------MYB46(3) <----------ID1<-----------ARR10   --------->HSFB2a(2)  ------   gaagacctgaaagataggaatggtgagtgcgttacaacaaataggacaatcgagaagatctagctcgaacaacgtcccagatcgtactaccacatctcct  24855000                                                               <---------HSFB2a(1)                                                               --------->HSFB2a(1)                                                               --------->HSFC1(2)                                                               <---------HSFC1(2)                                                          <---------HSFB2a(2)                  ------                                                        <---------ZAT2                         <-----                                                        --------->At4g35610                <---------ANAC58                                                        <---------At4g35610                <---------ANAC58                                                      <---------DEAR3(1)                  <------NtERF2                                                     <---------At4g35610                <---------DEAR3(1)                                                     --------->At4g35610              <---------ANAC58                                                     --------->ATERF1(1)              <---------ANAC58                                                   <---------DEAR3(1)                <---------ZAT2 -ARR10                                            <---------RAP2.6(2)            <---------ANAC58 ==HOX2a_HOX2a                             <----------DOF2--------->HSFB2a(2)     <---------ANAC58 ==HOX2a_HOX2a                           ---------->ID1 --------->ZAT2        --------->ATERF1(1) -------ALFIN1                       <----------DOF2<---------ATERF1(1)     <---------ANAC58   <----- ->ZmHOX2a(1)                    <---------GLK1(1)<---------ORA47(1)        <---------ANAC58  <------ --->ANAC46    <<<<<<<<<TBF1     --------->GLK1(1)--------->RAP2.6(3)       <---------ANAC46<--------   ccaccattttcgccttcttcttcaacaatggaaggaactctttgtctttttggacggctgctcgaagcttcttctctggcgagggcttgctcggcgttcg  24855100                                                                           ---------->DOF2                                                                          <---------AHL20(2)                                                                        <-----------TBP  <---------MYB52(1) <----------DOF2                                                     <<<<<<<<<EIN3      <-------GAMYB --->MYB52(2)                                                       ----------->GT1    <---------ANAC58 ----ANAC58                                                     ------------>CBF       <---------ANAC58 ----ANAC58              <---------HSFB2a(2)                   --------->ANAC58   --------->DAG2 -TEIL                   --------->HSFB2a(2)                   --------->ANAC58 ---------->DOF2 -SPL7        <------------CBF  ----------->GT1      <---------GLK1(2) ------->TEIL   <-------TEIL  <   tgcctttcaccatggctattggaatttttggaaggggttaagtctggaatccaaagagtctcgcttcgcaatgtatataaagaaaaggtgcgttagccct  24855200                      ----------->HVH21                                                      <-------                    --------->LBD16                                               ----------->RAV1(1)                    --------->At4g35610                                 <---------ICU4       --------                    <---------At4g35610                                 --------->YAB1      ---------                  <---------LBD16                                      <---------ATHB51 <---------AHL20(2)                 <<<<<<<<<<E2Fd                                        <---------ATHB12 --------->AHL20(2)                 <<<<<<<<<<E2Fa                                        --------->ICU4  --------->AHL20(2)                 <<<<<<<<<<E2Fe   --------->LBD16                    --------->YAB1<---------At4g35610                 <<<<<<<<<<E2Fc  <---------HSFB2a(2)               ------------>CBF--------->At4g35610 -----------GT1<-----------GT1   --------->HSFB2a(2)       <----------DOF2     --------->AtLEC2   agttaccttctcttatttttcccgctgaaacgtttccagagtttggaatatcaaacgtttcctttctactacaataatgacatgcagcataaaattaaaa  24855300                                                                       --------->LBD16    --------->ANAC46                                                   --------->HSFB2a(2)    --------->ANAC55(1)                                                <---------HSFB2a(2)    <---------ANAC55(2)                                                ------>ZmHOX2a(1)    --------->ANAC55(2)                                <-----------HVH21 --AHL20(2)              --------->AHL20(2)           <-----------RAV1(1) ->AHL20(2)        --------->MYB52(1)   <------------CBF            ------>ZmHOX2a(1) >AHL20(2)  ---------->DOF2          ----------->RAV1(1)      <---------ALFIN1   tgagacacataactcaaagactaacaaaaaaatgttttccaacattgaatacaaggctgtcgcatcactcctcctcgaaaacctcgaaataagcttagtt  24855400                  ----------->RAV1(1)             <---------YAB1           <---------ICU4           --------->YAB1          <---------ATHB12          --------->ICU4          <---------ATHB51        --------->WOX13(1)      ------------>CBF                                                 ------>ZmHOX2a(1)  ------->GAMYB --------->At4g35610               <----------DOF2------>ZmHOX2a(1)    ------->TEIL   tcaacagaaccaattatgagcaccattgttgattcgttctcacttgctctatcttttgttaattctcctagtcctccaaaaaaccatgagccttcttgtc  24855500                  <------ZmHOX2a(2)                 <---------ARR11(3)                 --------->ARR11(3)             ------>ZmHOX2a(1)         <---------ARR14(2)         --------->ARR14(2)        --------->bZIP60(2)   --------->ANAC46          ------------>MYB.PH3(2)    <---------YAB1                   <-------TEIL   --------->ANAC58    ---------->DOF2       --------->DAG2               --------->ANAC55(2)   --------->ANAC58  <---------YAB1         ---------->DOF2<---------WOX13(1)       ---------->DOF2   aaaacatgccaggtcctgagatcatcaaagaagtgagttactagcaaaaagctaaactctcattgactcgttccatatgtaataaacaaagttcatgagt  24855600  Previous    Next  AGI:  At1g66610.1    Description:  seven in absentia (SINA) protein, putative. Identical to E3 ubiquitin-protein ligase SINA-like 1 [Arabidopsis Thaliana] (GB:Q9C6H4;GB:Q1PFG0); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66620.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 24853379    to: 24855113    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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