Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ------->TEIL                                                                                  <---------ICU4                 <---------AHL20(2)                                    <---------WRKY38(1)               <----------DOF2              ----------->RAV1(1)       --------->WRKY18(1)      --------->ARR14(2)               --------->ATERF1(1)          <------MYB46(1) <---------YAB1      <---------ARR14(2)             <---------ANAC58               <------MYB83  --------->YAB1  --------->HSFB2a(2)     <----------DOF2 ------>NtERF2       ---------->DOF2    --------->ICU4 ------->ARR11(3)--------->AHL20(2)  <---------ANAC58    ---------->DOF2   ----------->GT1       ----   gtatctcgaatcggactctttaattggactttgagtttggcttcggccacagtattttggaaaggaaagttggtcaaacgtgaataatgaatgtttcgga  24844400                                                                           ------>ZmHOX2a(1)                                                                      ------>MYB83                                                                      ------>MYB46(1)                                                                  ------->TEIL                                                                --------->LBD16                                                              <---------LBD16    ------>ZmHOX2a(1)                                                          <---------ARR11(3)    <---------MYB59           <---------AHL20(2)                       <----------ID1<-----------ARR10                 -     <---------CCA1(2)                              ----------->GT1 <---------MYB59                <-   <---------CCA1(2)         --------->ANAC46     ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)  <----- ----->GLK1(1)              <-------TEIL--------->YAB1    --------->ARR11(3)   ----------------->AGL1   cttccctatctcttaaatttcatcgaaacatacacaatccaaacaaaatcaaaaaagaaaaatctccggacctaatcctattcctaattcagtccgtctt  24844500            <---------ARR11(3)            --------->ARR11(3)                            --------->ANAC46           --------->YAB1               --------->ALFIN1------->GAMYB <-----------GT1          --------->ICU4            <---------At5g28300 ----------->RAV1(1)       <-----------------AGL1        ---------->DOF2  <---------DAG2--------->LBD16  --------->TOE2(3)         ----------------->AG -------->YAB1       <------ZmHOX2a(2)------->GAMYB    --------->MYB46(3)         ----------------->AGL1 --------YAB1<------ZmHOX2a(2)     <-----------GT1   --------->WOX13(1)      --------->ANAC55(2) -----DOF2----------->ARR10<----------DOF2  <------ZmHOX2a(2)        <-----------GT1   tatcattttgcaaagatcatcggatcactctttgttataaccgtggatcaattgtcaaccacaaaactgtttttccttcacgtttcccaattagttagca  24844600                                                        ------>ZmHOX2a(2)                  --------->ATHB51                                                       <------ZmHOX2a(2)         --------->ALFIN1                                     --------->TOE2(3)------->TEIL     ------->TEIL       --------->ICU4                          ---------->ID1              <---------ARR14(2)         --------->CCA1(2)                      --------->CCA1(2)   <---------ARR11(3)        --------->ANAC46   --------------         <---------AHL20(2)          --------->TOE1(3)--------->ARR14(2)      <---------TOE1(2)         --------->AHL20(2)  <------NtERF2--------->ARR11(3)     <-------TEIL <---------TOE2(2)   actctctaagtttaattaagagagatttggcctcattaaccatagatattagaatggatccagtaagtacatgaaactcgaaggtatgggccattatggg  24844700                 <---------ZAT2                 --------->ZAT2                 --------->At4g35610        --------->YAB1       <---------ATHB12              <----------DOF2                                        ------>ZmHOX2a(1)      ------>MYB46(1)            <----------DOF2                                            =========      ------>MYB83          ----------->HVH21                                          <---------GLK1(1)    <---------MYB59      --------->MYB52(1)                                      --------->YAB1 --->AGL1   ---------->DOF2 ------->GAMYB                     <---------ALFIN1  <---------YAB1   cctgaaccaaacatgaaagagctgggataactgacctttctttttgacatttgagcatcgagcctcacagtgcaagagttctattatagaactcctatac  24844800                                                               <---------ANAC46                                                               <---------ANAC58                 <-----------ARR10                             <---------ANAC58            <---------                 <---------ARR14(2)                           <-------TEIL           --------->ATHB12                 --------->ARR14(2)                        <---------At4g35610      <---------YAB1            *TSS<---------CCA1(2)                       <---------ZAT14           --------->YAB1      <---------ATHB12                             <---------YAB1                 <---------ICU4      <------ZmHOX2a(2)                          --------->CCA1(2)               --------->ICU4 ============HOX2a_HOX2a                 --------->ANAC46<-----------RAV1(2)  <---------YAB1    <----   taacaccgatcaagaggcaaatctcccaactcttccaacttccaaggctcgatatgagtacaggtgcgttttcttctcttctcattatgatttcttttct  24844900                                          <---------WOX13(1)                                        --------->ATHB12                                     --------->YAB1                   --------->MYB52(1)                   --------->HSFB2a(2) --------->ICU4                <-----------GT1  <-----------GT1  <---------HSFB2a(2) <---------YAB1          --------->TOE1(3)            <-------- -DOF2            <---------LBD16   <---------YAB1             --------->TOE2(3)            --------- ------DOF2  --------->GLK1(1)      --------->ICU4   <---------WOX13(1)                  <----------DOF2   tttttttctattccgatttctctggaattgaagatgtgatgatgattgaaattggattgaaatcaccttaaataccagatttatgagatagcttttggaa  24845000                                                     ------>ZmHOX2a(1)                                                     --------->LBD16                        --------->At4g35610          <---------HSFB2a(2)                        <---------At4g35610 --------->ATHB12                   --------->YAB1          <---------YAB1                                      <-----                   <---------ICU4          --------->ICU4       <----------DOF2                <-----  <---------ICU4--------->YAB1       <---------------AtSPL3    <---------ICU4            <-----------RAV1(1) <---------ATHB12 <---------YAB1     <---------------AtSPL8<---------AHL20(2)          <-------GAMYB -HSFB2a(2)     <---------ICU4       ------->TEIL    --------->HSFB2a(2)              <-----------RAV1(1) >HSFB2a(2)<---------WOX13(1)     <---------ANAC46  <---------LBD16      ----------->GT1 <---------MYB46(3)   ctaatcactgctaattgatcatcatcatctgcaattgtgtatgtactgattagtcctggaattaatctttagagccagtaaattctctctgttgttggag  24845100                    ----------->GT1                    <------MYB46(1)                   --------->MYB59                          <-------TEIL                  <---------CCA1(2)    --------->MYB52(1)    <---------YAB1                <---------TOE2(3)            <-----------RAV1(1)  <---------ARR11(3)<------MYB83                      ---------->DOF2     <---------GLK1(1)--------->ARR11(3) -----ARF1 <---------ANAC58                      <------ZmHOX2a(2)        --------->GLK1(1)------->TEIL -----ID1  <---------ANAC58 ----------->GT1     <---------ARR11(3)<----------DOF2   <---------TOE2(3)   acaagataactgtgcttgagtttggtttattagtaaaacccaaaaccctagatcaacaaaggttcatactttatagatttcccactaatgttgtatcttg  24845200                                                                           <---------YAB1                                                                         --------->ZAT6                                                                      <---------ICU4                                                                      --------->YAB1                                                                     <---------YAB1                                                                     --------->ICU4                                                                   -------->HAHB4                                                                   <---------ICU4                                                                  <---------ATHB12                  --------->ANAC46                                --------->ICU4--------->DAG2          --------->AHL20(2)    --------->ATHB12  <------ZmHOX2a(1)--------->YAB1                <---      --------->AHL20(2)     --------->YAB1      ----------->GT1 <---------TOE2(3)       ------>ZmHOX2a(2)      <---------AHL20(2) --------->TOE2(3)      ----------->GT1 --------->YAB1 ---------->DOF2 ------   ttttgtatttaatcaaatacactacaacctatattgatttagttagaagagaggaaaaacaggttttaatgatgatcactataaagttcgatctgaatcg  24845300  Previous    Next  AGI:  At1g66590.1    Description:  cox19 family protein. similar to cox19 family protein [Arabidopsis thaliana] (TAIR:AT1G69750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45854.1); contains InterPro domain CHCH (InterPro:IPR010625) Range:  from: 24844812    to: 24845992    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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