Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->MYB52(1)                                               ----------->HVH21                                             <------NtERF2                                             --------->ANAC58                                             --------->ANAC55(2)                                             <---------ANAC55(2)                                             --------->ANAC58                                            ------>NtERF2                                           <---------ANAC46                                          <------NtERF2                                          --------->ATERF1(1)                                         <---------ATERF1(1)                                         <---------DEAR4(2)                                         <---------RAP2.3(1)                                         ------>NtERF2                                         <---------RAP2.6(1)                                         <---------ERF1                                        <---------ATERF1(2)                                        <---------RAP2.3(2)                                        <---------DEAR3(1)                                        --------->ATERF1(2)                                        <---------RRTF1(3)                                        <---------RAP2.3(3)                                        <---------RRTF1(2)                                        --------->DEAR3(1)                                    -------                                       ------>NtERF2                                         --------                                       <------NtERF2                                         ------->GAMYB                                       <---------ABI4(1)                                    <--------                                       --------->ATERF1(1)                                  ---------                                      <---------ERF1                                    <-----------HVH21                                      <---------ATERF1(1)                               --------->At5g28300                                      <---------RRTF1(1)                              <------NtERF2                                      <---------RAP2.3(1)                            ------>NtERF2             <---------ANAC58        <---------RAP2.3(3)                            --------->DEAR3(1)             <---------ANAC58        <---------DEAR3(1)                             <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------ANAC46        <---------RRTF1(3)                             <---------ALFIN1         <-------GAMYB               <---------RRTF1(2)                            --------->MYB46(3)        <-----------RAV1(1)          <---------RAP2.6(2)                          --------->LBD16   --------->GLK1(1)                 <---------RAP2.3(2)                          ------>NtERF2  --------->ARR14(2)                <---------LBD16  --------->ARR14(2)       <---------ARR14(2)  <---------ARR14(2)               <-----------RAV1(1)<-------TEIL            --------->ARR14(2) ---->ZmHOX2a(2)        ----------->HVH21<---------DEAR3(2)             --------->TOE2(2) --------->ARR14(2) ----ZmHOX2a(2)        ------>ZmHOX2a(2)--------->ALFIN1                --------->TOE1(2) <---------ARR14(2) ------ARR14(2)       <---------At4g35610<---------ORA47(2)            --------->MYB46(3) --------->MYB52(1) ----->ARR14(2)       --------->At4g35610<---------RRTF1(1)   ------>ZmHOX2a(1)  --------->ANAC46   atcggaattgctgttgcgcttgtgatctgaaacgtttttgcggcggcgcgtaacggttcgtctcctcttgataacctccgattccgccaccgtaaccgcg  24816100                                                          <-------TEIL                                                          ------>ZmHOX2a(2)                                                         --------->ARR14(1)                                                         <------ZmHOX2a(2)                                                        --------->ARR11(3)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                              <---------ZAT14                                              <---------ZAT2                                   <---------ANAC58     <---------ARR11(3)                                   <---------ANAC58   ----------->ARR10                                   <---------ANAC46 ---------->DOF2 -->LBD16                    <---------ANAC58 --------->ZAT2   <---------MYB46(3)     ----------->RAV1(1) ->ANAC46                    <---------ANAC58 <---------At4g35610                     --------->MYB52(1) ----AtMYB77                 <---------ANAC46 --------->At4g35610            <---------YAB1   <------ >MYB46(3)                >>>>>>>ZML2         --------->ZAT14<---------MYB52(1)  --------->AHL20(2)   attgtcgcttcttctcttcatcgttgttctagcgtttgcgtttctctgagcagagaaagatccgtttgatgccatcttcacgattaaacaacagttatga  24816200                                                         <-------GAMYB                                                        <---------ANAC46                                                        <---------ANAC58                                                        <---------ANAC58                                                     <---------WOX13(1)                                                   --------->ATHB12                                                <------MYB46(1)                                                <------MYB83                  ---------->DOF2           <---------ARR14(2)             ------>ZmHOX2a(2)   --------->TOE1(3) <---------MYB46(3)      --------->GLK1(1)          --------->TOE2(3)<---------YAB1   <------ZmHOX2a(1)       ---------- ---YAB1<------ZmHOX2a(2)---------->DOF2    --------->ARR14(2)    ----------->GT1       --------->ATHB12   gttttcagagatcgatcgcagaaagagaaaagaaaccctaaatttggatttggtgattgcgttgagagaggagaattttagaaattgaaacgattgaaaa  24816300                                                                                             <-------MYC3                                                                                             <-------MYC2                                                                                             ------->MYC2                                                                                             ------->MYC3                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                   ---------->DOF2          <--------                                                                   ==================================                                                          <---------MYB46(3)                <--------                                                        <-------GAMYB                       <--------                                                        =============================================                                                       <---------DEAR3(2)                   <--------                           <------MYB46(1)            <---------DEAR4(1)                    <--------                 --------->ANAC58    --------->AHL20(2)<---------MYB46(3)               <-----------HVH21               --------->CCA1(2)     ----------->TBP  <---------DREB2C(2)            ================             *TSS--------->ANAC58--------------->AGL15<---------At1g77200            <-------GAMYB      ------->TEIL    ----------->ARR10            <-----------RAV1(1)   <---------ANAC46   ---------      --------->GLK1(2)    <------MYB83  <---------AHL20(2)   =======================================      <---------ARR14(2)<---------ARR14(2)    --------->TOE2(3)--------->DAG2     <---------ANAC46 ->GT1--------->ARR14(2)--------->ARR14(2)  <---------TOE2(3) ---------->DOF2    <---------LBD16   ataaaacgaatctgaagagacgcgaagataggtttctctataaataaacgtttatgtcggttgataaagtaaaccgcgtgaatcgcgcgttgtcacgtgt  24816400 >O2 -O2<---------ALFIN1 -ANAC58 -ANAC58 >TGA1a -TGA1a =bZIP_DOF -ANAC46 -bZIP60(2) =MYC_MYB                                            --------->HSFB2a(2) -ANAC55(1)                                          --------->HSFC1(1) -ANAC55(2)                                      <----------DOF2                               <----- =MYC_MYB                                 <------------CBF                                    ------- >ANAC55(2)                         ----------->GT1  <---------HSFB2a(2)            <-----------GT1 *TSS =bZIP_DOF            <---------MYB52(1)<---------AHL20(2)               <---------At4g35610<--------   tttgggccacggtttataggcccagtttgttaatgggcctgttaaattgggccttctggaatctactcgttgttccgctctgtattttgctgttctttat  24816500                                                                                               <-----                                            <---------GLK1(2)                                  ------      --------->ANAC46                      <---------ARR14(2)                 --------->At4g35610 -------CBF                         --------->ANAC58            <---------ANAC58   <---------ALFIN1 -->ATHB12                  >>>>>>>>>TBF1   --------->ARR14(2)  <---------ANAC58   --------->REM1(1) --DOF2           --------->ZAT14   --------->ANAC58   --------->ZAT18         <---------At4g35610   tgaattcgacgctaaattagtgaagacgaagaagaaggaagctatggattctgagaaggcactagagcttgtgaagcatggagctacacttctatttctc  24816600           <<<<<<<<<<<<<<<<<LFY     ------>ZmHOX2a(1)                                                                              <    --------->TOE2(3)             <---------TOE2(2)                                              <--- ----HSFB2a(2)                   <-----------RAV1(2)         <----------DOF2  <----------DOF2    ---- --->HSFB2a(2)      --------->ETT(1)                    ---------->DOF2       <---------DAG2  -------   gatgttcctcaatatacactggtcggaatcgatactcaggtttgtctacttctaagtttaaagcttttatcgaatttcaacttttctcagtttcaaagtt  24816700                                           <---------YAB1                       --------->HSFB2a(2)   <----------DOF2                --------->ARR14(2)                            <---------HSFB2a(2)   <---------DAG2              --------->ALFIN1                            --------->ARR11(3) -----------GT1             <---------TOE2(3)                              <---------ARR11(3) ------MYB46(3)           <---------AHL20(2)                              --------->CCA1(1) ----->MYB52(2)       <----------DOF2  <---------GLK1(2)            ----------->GT1   ---------->DOF2 ----->MYB.PH3(2)---------->DOF2  <---------ARR14(2)      <----------DOF2 --------->RVE1(1)   tgttactttattccaagtttaaagctttttaatgtggaactgattctccttgtatagtttctttttggtttagtaaatatctcgagaagaaagtgtattt  24816800                                                --------->ATHB12                                              <----------DOF2                                           --------->GLK1(2)                      <---------TOE2(3)   --------->ARR11(3)                 >>>>>>>>>ARR1                      <---------TOE1(3)   <---------ARR11(3)                 >>>>>>>>>ARR2              --------->AHL20(2)          <---------GLK1(2)                 --------->ATHB12              <---------AHL20(2)          <---------ARR14(2)               <---------YAB1           <          ----------->GT1                 --------->ARR14(2)       <---------GLK1(1)         <-------         <---------YAB1           <----------DOF2               <---------YAB1               <-------   tgagtttgaatatgattaaaatttgaggtttttgagcttttgaagattctttattggctatggattttgatttctgtatgattgtgaaacatatttcttg  24816900                                                      <-------GAMYB                                              <---------GLK1(1)                                              --------->GLK1(1)                                             --------->ARR14(2)                             <--------                                             <---------ARR14(2)                             ---------                                             <---------ARR11(3)                             ---------     --------->ATHB12                        --------->ARR11(3)  <----------DOF2            ------>ZmHOX2a(1)    <-------TEIL                             <---------GLK1(2) --------->ZAT2             ----------- ---------KAN4(2)                     <-------GAMYB   <---------ZAT2           <---------TOE2(3)   <- --ANAC58         <----------ID1     <---------MYB46(3)        --------->At4g35610<---------YAB1<---- --ANAC58  <---------ANAC46         <---------TOE2(3) --------->ZAT2 ---------->DOF2 <-----------GT1   agcatattcattggcctataacgacaatgttttgtattgtggttacagatattcgcagttggaccagctttcaaagggattaagatgatacctcctggaa  24817000  Previous    Next  AGI:  At1g66500.1    Description:  zinc finger (C2H2-type) family protein. similar to S-locus protein-related [Arabidopsis thaliana] (TAIR:AT5G43620.1); similar to S-locus protein 4 [Brassica rapa] (GB:BAA85453.1); contains domain PTHR15921 (PTHR15921) Range:  from: 24814812    to: 24816313    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g66510.1    Description:  AAR2 protein family. similar to CePP protein [Brassica napus var. napus] (GB:CAB89180.1); contains InterPro domain AAR2 (InterPro:IPR007946) Range:  from: 24816500    to: 24819811    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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