Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ANAC58                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)   --------->AHL20(2)                                          <---------TOE2(3) -------->YAB1                                               <-----------GT1 --------YAB1                                      --------->ARR11(3)                 --------->ANAC58 ------GLK1(1)                                     <---------GLK1(2)<---------ANAC58  --------->ANAC58 ---->ARR11(3)                 --------->ANAC58    <---------ARR11(3)          <---------ARR14(2) -----ARR11(3)                 --------->ANAC58    --------->ARR14(3)          --------->ARR14(2) ---TOE1(2)           --------->ZAT14              <---------ARR14(3)         <---------CCA1(2) ---TOE2(2)         --------------->AtSPL8   --------->TOE2(3) <---------TOE1(3)    ---------->DOF2 ->GT1       ---------->DOF2 ---------->DOF2 --------->TOE1(3)<---------At5g28300 --------->ANAC46   tatcataaaatccaaaaaagtctgagtactcaaaagcatcgaagaaacctcaagattttgtagttacggttcttgttctcgtatccgaaagcaaacttgt  24813800                                                                          --------->ANAC46                                                                          --------->ANAC58                                                                       <---------ZAT14                                      <---------ALFIN1             --------->ZAT6                  <---------GLK1(1) <<<<<<<<<GATA-4           <---------TCP20             <---------LBD16        <<<<<<<<<GATA-2      --------->MYB52(1)       <-----------HVH21        <---------------AGL15       <<<<<<<<<GATA-3     --------->CCA1(2) --------->ANAC58      -----       <---------ARR11(3)           <<<<<<<<<GATA-1--------->LBD16 --------->ANAC46<---------MYB52(1)   <---------ANAC55(2)             --------->ARR14(2)--------->LBD16   --------->ZAT14          -----   --------->ANAC55(2)  <----------DOF2          --------->ANAC46<---------ALFIN1<---------MYB46(3)   ctgatacttgatatttgtggaaatcgcttatgggttgaatccaccctgttccccccagataagggttccacactacaggccatcggttacctctgaagac  24813900                                              <<<<<<<<<<WRKY26                                              <<<<<<<<<<WRKY38                                              <<<<<<<<<<WRKY43                                              --------->WRKY18(1)                                  <---------AHL20(1)                                  --------->ARR11(3)                     ---------->DOF2        <------MYB83                                    ---------        --------->ANAC58     --------->AHL20(2)                              <---------WRKY12        --------->ANAC58   <----------DOF2  <------MYB46(1)              ----------->GT1    <--------   <----------ID1  <---------ATHB12       <--------P                     <---------MYB46(3) --------- ---->ANAC58  --------->ANAC58    --------->AHL20(1)            <----------DOF2             <-------- ---->ANAC58  --------->ANAC58   --------->AHL20(2)             <---------DAG2           <----------DOF2   gcataacaacaagccttcgcaatgaaagactttaaatatatcgagttggtcaagtatacttactcgctttatagatggttcaacgaagtcgctttcgtaa  24814000                                                    ------->TEIL                                               <---------ICU4                                               --------->YAB1                                              <---------YAB1     ==============HOX2a_HOX2a                --------->ICU4     ------>ZmHOX2a(1)                   --------->WOX13(1)        ------>NtERF2                    - >YAB1                      ---------->DOF2 --------->YAB1      --------->ZAT2                     -- -ANAC58          <----------DOF2     --------->GLK1(2)         --------->At4g35610            <----- >ANAC55(2)       <---------DAG2      --------->ARR11(3)        <---------At4g35610 --------->GLK1(2) -ANAC58    <------ZmHOX2a(2)         <---------ARR11(3)       <-----------RAV1(1)  <---------ARR11(3)   ttgagtccttggagatcgaactttattgaataaagcccaaaatctatcatcatgaaccctagaaactgctgcctcgttttgccaaaaatctgagtttttg  24814100                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                              =========                                --------->ZAT14                                            <---------ARR11(3)                                <---------ZAT18                                --------->ANAC46                              --------->ANAC58                                 --------->ANAC58           <-------MYC3       --------->ANAC58                                 --------->ANAC58           ------->MYC3      --------->SPL7                                  ---------->DOF2<------ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->AtMYB61        <---------ALFIN1   <---------SPL7 <---------ARR11(3)     <-----------ARR10         --------->ARR11(3)   <---------ANAC58       ------>ZmHOX2a(2)                      --------->ARR14(2)   --------->LBD16   <---------ANAC58      <---------------AtSPL3                  <---------ARR14(2) <---------LBD16 -------->DAG2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->GLK1(2)  <------NtERF2 -------->DOF2 <-----------GT1--------->ANAC46                   --------->ARR11(3)------>NtERF2  <-- ----YAB1xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ARR11(3)     <---------ARR11(3)--------->MYB52(1)   ataaagcgttccacgttttacaagtagatcgcacggcactcagagatgttaatggaaccctagagagtatctcttctaccaaagccaccggaagatcaga  24814200                     <---------YAB1                 <------------CBF           <---------YAB1                                                 ---------->DOF2        <---------YAB1                                                <-------TEIL              <----     ------>ZmHOX2a(1)                         <---------ICU4        --------->CCA1(2)    --------->DAG2 ===========HOX2a_HOX2a                     --------->YAB1   --------->AHL20(2)          ---------->DOF2 -------GLK1(2)  <---------GLK1(2)         <---------YAB1    <-----------TBP         <----------ID1   gattgtcctcatgtttatagattgtgaatgtgttatctcattagaatgataatgtccatacatatatatagatacacaaaggaattagggaaaaagctaa  24814300                   <------MYB83                   <------MYB46(1)              <---------ZAT6                                     --          ----------->HVH21       ------>ZmHOX2a(1)                                               <--      --------->ATHB12    <---------TOE1(3) --------->ZAT14                                 ---------      --------->YAB1      <---------TOE2(3) <---------ZAT14                                 <--------     <-------TEIL <---------TOE2(3)   <-----------GT1                        <---------ANAC55(2)  --- --------CBF      --------->MYB59--------->TOE2(3)         --------->GLK1(2) --------->ANAC55(2)<----   ttgcacattcatgggacgattaggtttcaaggtttccttatttcggtttagtggtatagagagtctggtttatgtaaacaggtaatcaagtgtgatttcc  24814400                      ----------->TBP                                             <------------CBF --------->GT1        --------->AHL20(2)                                         --------->ATHB12 -------TOE1(2)     --------->TOE2(3)                                            <---------ICU4 >GLK1(1)           <---------------AGL15                                        --------->YAB1     < -GLK1(1)           <----------DOF2                                   --------->MYB52(1)       ------ ------>LBD16       --------------->AGL15                 <----------DOF2       <---------YAB1<------ -----LBD16   --------->ANAC46       <------------CBF     <---------DAG2      --------->YAB1 <-------   ctggttaaaccgaaacactctactttaaatagagtgtttcattgtatttgtcatttgagactttatgtgaaataacagaattatcattgttcttcgtttg  24814500                                   --------->ARR11(3)  --------->TOE2(3)     <---------GLK1(1)            <------ZmHOX2a(1)   ----------->GT1 -----------GT1               ---------->DOF2        <---------TOE2(3)                             <- --->MYB52(2)           <-------GAMYB               <-----------GT1                                -- ---TOE1(2)           <---------TOE1(3)        <----------DOF2                      <-----------GT1-- --MYB52(1)           <---------TOE2(3)   ---------->DOF2                        <---------ICU4    <-   tttttcgatttctcatcaactattagggttgaaaaaggattttgaaaagctttataacgtttattagcaaaacaagtttgtgagaattactctgtcttct  24814600                                                                                                    <       --------->ANAC58                                                                       <------       --------->ANAC58                                                                  <----------DOF2 --------HSFC1(1)          ---------->DOF2                    <---------ANAC55(1)  <---------MYB52(1) ------->HSFB2a(2)       --------->YAB1                       <---------ANAC46    --------->TOE2(3)-- ------->HSFC1(1)      --------->GLK1(2)          ---------->ID1        ---------->DOF2 <---------ICU4 --------HSFB2a(2) <------ZmHOX2a(1)    <----------DOF2 <---------MYB52(1)       ----------->GT1 <---   tctcgaagtaagaaaccctaaggagaatcaaaagaagacgagcttcacgtttgtctctgttattaagtgtaaactaaagcatttcgttaatcttttctga  24814700  Previous    Next  AGI:  At1g66490.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 24813084    to: 24814212    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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