Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                  <--                                                   --------->AtLEC2                              <---                                              --------->ANAC58                                -------     ------>MYB83                  <-----------------AGL1                                     <------     ------>MYB46(1)          --------------->AtSPL3                   --------->HSFB2a(1)<---------At4g35610   <---------MYB46(2)         --------------->AtSPL8        <---------DDF1               <---------ANAC46   <---------MYB59            <---------------AtSPL3      <------ZmHOX2a(2)             --------->ZAT18 -----------GT1               <---------------AtSPL8     --------->ARR11(3)     <---------WRKY38(1)-- ---->DOF2                   <------ZmHOX2a(1)--------->ANAC58        ------->TEIL  --------->ATHB12- >TOE2(3)                    ====================================HOX2a_HOX2a --------->At4g35610----- >TOE1(3)             <---------ANAC46 <---------ALFIN1  <---------ARR11(3)  <---------At4g35610-----   agttaccaaactctcacataagtagagtataggaggtacctccactggaagccatgtaagatcgacatgctgaacgttctgctcaacgattgcgctgatc  24731900    <------NtERF2   ----------->RAV1(1)   ------>NtERF2                          <---------WOX13(1)  --------->ANAC58                      --------->ATHB12  --------->ANAC46                      <---------ICU4  --------->ANAC58                     --------->ICU4 ---------ALFIN1           ------>ZmHOX2a(1) -------At5g28300          ================HOX2a_HOX2a                                  <---------MYB46(3) ------ALFIN1   --------->ATHB12       <---------YAB1                                 <-------GAMYB -->ARR14(2)    --------->ATHB51     --------->YAB1                                   --------->At5g28300 ---ARR14(2)    <---------ICU4       <---------ICU4 --------->GLK1(2)      <------ZmHOX2a(1) ------->ANAC46 <--------HAHB4      <------ZmHOX2a(2)                      <---------ICU4 -------->DEAR3(1)<---------YAB1   --------->ARR11(3)      --------->TOE2(3)      --------->MYB52(1) ->ZmHOX2a(2)  <---------YAB1      <---------ARR11(3) --------->TOE2(3)  <---------TOE2(3) ---->MYB46(3) --------->ICU4  --------->YAB1      <---------GLK1(2)     <---------TOE1(3)        ---   caccgcgccatatgagcattattagtctccttatcacgatcatgattgcaatagattcttaacttaaacttgtttaaggatgactcacggttgatactca  24732000                                               <-------TEIL            --------->ANAC46            --                                            --------->At4g35610        <---------ALFIN1            <-                                            <---------At4g35610      <---------ALFIN1          ------                                  <---------ANAC58              --------->LBD16   --------->ARR11(3)                                  <---------ANAC46             <---------LBD16    <---------ARR11(3)-                                  ----------->GT1      <-----------ARR10      ---------->DOF2 <------ ------->DOF2                     <---------ANAC58--------->AtLEC2<------ZmHOX2a(1)          <-------   gaaagctatcgataaaactcacaagagtatcgaattgtgtgaaatcagcttcatccaaatctaatccaggaacacacctccaaagatgtctccattcggg  24732100                           <-----------RAV1(1)                        <----------DOF2                       ==========================HOX2a_HOX2a                       ------>ZmHOX2a(2)                      <---------RVE1(1)                      <------ZmHOX2a(2)                                                 --------->MYB46(3)                      ===========================HOX2a_HOX2a                          --------->WOX13(1)                     --------->AGP1                                                 <---------MYB59                     <---------ARR11(3)                       <---------GLK1(2)     --------->MYB46(3)                     --------->ARR11(3)                      <--------ATHB1        --------->ANAC58     --------->ANAC58<---------ARR14(3)                      -------->HAHB4        --------->ANAC58     --------->ANAC58<---------AGP1                          <---------ICU4       --------->SPL7  --------->ANAC46   --------->ARR14(2)                     <---------ATHB12    <---------SPL7 ------->ARR14(2)    --------->ARR14(3)         --------------->AGL15   <---------ARR14(2) --------ARR14(2)    <---------ARR14(2)      <---------ARR11(3)         <-----------ARR10 --->LBD16          <---------CCA1(2)     <------ZmHOX2a(1) --------->ICU4    --------------->AtSPL8< -------->CCA1(2)   <---------ARR14(1)  <---------ANAC46    <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---LBD16      <-----------GT1     --------->ICU4  ---------->DOF2      --------->ARR14(2)          - --LBD16   <---------ZAT6  <---------MYB46(3)--------->ARR11(3)        <---------CCA1(2)<---------ATHB12   ggatacgacgctagtcttaaccagatcttttgttggaatgttgaggagaacttgaaagagtaatgattctggcaaatctcttcgtacccaatcaccttca  24732200                                         ----------->GT1                                         <------MYB83                                         <------MYB46(1)                                        --------->MYB46(2)                           ---------->DOF2                          xxxxxxxxxxxxxxxx>smallRNA(i)                         <------ZmHOX2a(1)                         ==================HOX2a_HOX2a                        --------->LBD16 --------->MYB59             --------->ETT(1)           <---------MYB46(3)                               <---------ANAC46          <-----------RAV1(1)          <---------MYB55(1)                            <------------CBF    <---------GLK1(2) <---------LBD16 <---------MYB52(1)                            <---------ICU4  <  --------->LBD16<---------YAB1 <---------YAB1                                --------->TOE1(3)   <-- ---------LBD16<---------At4g35610  ------>ZmHOX2a(2)                       ------->TEIL<------------ -------->LBD16<-------GAMYB --------->ICU4                             --------------->AtSPL8-------   tccccagaatttttgtcggatgattcaggaaaagatgatcgtttggtaagaacatgtttctctccgtcttcgtccatgtaccttcaaaattgcgaagaaa  24732300                                                           --------->MYB52(1)                                                  <---------ARR14(2)          <---------DOF5.7(2)                                                  --------->ARR14(2)       --------->YAB1                                               --------->ZAT6         --------->ANAC46                                             ------>MYB46(1)--------->RAP2.6(3)                                             --------->MYB52(1)  <----------DOF2 ------->GAMYB      <                                             ------>MYB83--------->DOF5.7(2)--------->ARR11(3)    <-- ------NtERF2                        --------->TOE2(3)  <----------DOF2 ---------->DOF2           --- --------ID1                         --------->TOE1(3)  <---------DAG2--------->ANAC58       -------- -----------TaNAC69(2)               <---------MYB59 <---------ALFIN1 --------->ANAC58     ---------- --->DOF2               --------->DOF5.7(2)<---------MYB59 <---------DOF5.7(2)--------->MYB52(1) <---   gcggcaagactagatgaaaatgaaacgataactattaaacctaaacctaacagttccactttaacggcttctacgaaagataacggagaaccaaaacgcc  24732400                --------->ARR11(3)               --------->CCA1(1)               --------->RVE1(1)           <---------AHL20(2)                                         <-----------GT1           --------->AHL20(2)           --------->AHL20(2)       --------->AHL20(2)        --------->YAB1              <---------AHL20(2)           <---------AHL20(2) <---------TOE1(3)                 <---------AHL20(1)            --------->YAB1            <--------- <---------TOE2(3)     --------->ARR14(2)                        <---------AHL20(1)     --------->YAB1 ---------DOF5.7(2)    <---------GLK1(2)<---------AHL20(2)       <--------ATHB1       <-----------TBP -------MYB52(1)<---------ARR11(3) --------->AHL20(1)            <---------ICU4   <---------AHL20(2) ------>DOF5.7(2)      <---------ARR14(2)                       --------->ICU4   <---------AHL20(1) ->ANAC46  --------->AHL20(1)      <---------ARR11(3)         --------->YAB1------------>CBF >DOF2--------->AHL20(2)--------->GLK1(2)    ----------->GT1 <---------AHL20(2)  --------->AHL20(2) ----GAMYB <---------AHL20(1)     ----------->TBP           --------->AHL20(2)   <---------AHL20(2)   gttaacgttttaataaaatatctcagattctggactatatatttaaatggcaaaatagtatttttaataattttactaaacaatttttttttataacatc  24732500                                                                                       <---------YAB1                                                                 <------------CBF    <---------ICU4                                                          --------->YAB1            <---------YAB1                                                         <---------YAB1             --------->ICU4                                                         --------->ICU4           --------->YAB1              --------->ARR11(3)                       <---------ICU4            <---------YAB1              --------->GLK1(2)            --------->MYB52(1)--------->YAB1     <---------ARR11(3)             --------->YAB1      --------->YAB1        --------->YAB1        --------->AHL20(2)          --------->YAB1        <---------YAB1        <---------YAB1         --------->YAB1         <---------YAB1         --------->ICU4        --------->ICU4        <---------ATHB12 <---------AHL20(2)             <---------ATHB12    --------->YAB1      ------------>CBF    --------- --GT1<---------AHL20(2)   --------->ANAC55(2)----------->GT1--------->AHL20(2) --------->ARR11(3)  -   tgttttattttataataatcttggaacatatgtaatcataaaaaaaaacagaaataataataataaaaattgacatcaataatatcattatgaattgaaa  24732600                                                            <---------AHL20(2)                                                        <---------AHL20(2)                                                 <---------ICU4                                                <---------ATHB12                                                --------->ICU4              <---------ARR14(2)                <---------YAB1              <---------ARR11(3)              --------->YAB1--------->AHL20(2)              --------->ARR11(3)            --------->AHL20(2)              <---------GLK1(2)        --------->ICU4   --------->AHL20(2)--------->MYB46(3)              --------->ARR14(2)  ----------->GT1--------->ATHB12<-----------RAV1(1) -->GT1  <-----------GT1        ---------->DOF2<---------TOE2(3) --------->ALFIN1           --------- ---------->GT1             <----------ID1  <---------AHL20(2)<---------TOE2(3)            ----------   aattgaaaaatttacagattttctaaaattgagccaaagtaaaaattttaatgattttttaattaatgtgtggctaaccaaaaatcaaaaaaaaaaagtt  24732700                                                                                           --------->CCA1(1)                                                                             <---------AHL20(2)                                                                            <---------AHL20(1)                                                                            --------->AHL20(2)                                      >>>>>>>>>RAP2.2          --------->CCA1(2)      --------->YAB1                 ----------->GT1    <---------ARR11(3)         <------ZmHOX2a(2)  <---------AHL20(2)               ---------->DOF2      --------->ARR11(3)        --------->ARR14(2) <---------AHL20(1)            --------->TOE2(3)      --------->CCA1(1)          --------->AGP1<---------AHL20(2)       <-------TEIL                --------->RVE1(1)          <---------ARR14(2) --------->AHL20(1)      --------->ANAC58 <---------AHL20(1)                     --------->ARR11(3) --------->AHL20(2) ----------->HVH21     --------->AHL20(2)                 ---------->DOF2   --------->AHL20(1) >DAG2--------->AtLEC2 --------->AHL20(1)               <---------YAB1 --------->AHL20(2)  --------->RVE1(1) >DOF2--------->ANAC58 <---------AHL20(2)    <----------ID1   <---------ARR11(3) <---------AHL20(2)   ttagtgacatgcattcttaaagtaataaattatctaaatatctaaaaaaaacaaaattttgaaagatccaaaaaaaaataaaatttattcaaaatatcca  24732800  Previous    Next  AGI:  At1g66320.1    Description:  F-box family protein. Identical to FBD-associated F-box protein At1g66320 [Arabidopsis Thaliana] (GB:Q9C8Y5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G66640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 24730475    to: 24732277    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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