Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ANAC46                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                            ------>MYB46(1)                             <---------ALFIN1                                            ------>MYB83                               <---------ZAT18                                          <---------MYB59           <---------------------WRI1  <----                                       --------->CCA1(2)--------->ANAC46             --------->ANAC58                                   <---------TOE2(3)    --------->ANAC58             --------->ANAC58                                  ---------->DOF2       --------->ANAC58  --------->GLK1(1)<---------ATHB12                               <----------DOF2          <---------ANAC55(2)          --------->ANAC46          ----------->GT1 ---------->DOF2 <---------MYB46(2)   --------->ATHB12     ------->TEIL-----     <------ZmHOX2a(1)--------->ANAC46--------->ARR11(3)--------->ANAC55(2)       --------->ZAT14  <---------LBD16   --------->ANAC46  <---------ARR11(3)--------->ANAC55(1)       <---------ZAT18<---   aaactcaggaattggtaagattacaccacaaagctttaaagataccaaactcttacacacgtaaactattggaggtatttccaatgcaccccactcaaga  24721300                                           <------NtERF2                                         >>>>                                          ------>NtERF2                                        ------                                          ----------->RAV1(1)                     ===================                                         --------->ANAC58                         ------>ZmHOX2a(2)                                         --------->ANAC58                        <------ZmHOX2a(2)                                         --------->ANAC46                        ====================                                       --------->DEAR3(1)                       <---------ARR11(3)                                       <---------ALFIN1                         --------->ARR11(3)---           <----------DOF2            --------->ANAC46                    ----------->RAV1(1) <------    --------->At4g35610              <---------At5g28300                --------->LBD16      --------   --------->GLK1(2)                <---------ALFIN1                   --------->ANAC46    <---------ARR14(2) -----ARR11(3)   <---------MYB52(1)--------->MYB46(3)             =======================HOX2a_HOX2a ---->ARR11(3) <---------ANAC58    ------>ZmHOX2a(2)              ======================HOX2a_HOX2a ---ZmHOX2a(2) <---------ANAC58--------->WRKY12     <---------ICU4------>ZmHOX2a(1)        --------->ARR14(2)   tcgagatgctgaactttccgtttgacaacatcgttgatccaccgcgccatttgagcattaccagtctcctcatccccaacaagatcgcaatcgaatccta  24721400                            <------MYB83                           <---------AtMYB61           --------------->AtSPL3 >>>>>MYB98<---------------AtSPL8 >ZmHOX2a(1)               <---------------AtSPL8 =HOX2a_HOX2a             <--------P            --------->ANAC46 =HOX2a_HOX2a           --------->ALFIN1   --------->ARR14(2)                        --------->ZAT14 ------>TOE2(3)         <---------ZAT6     ------>MYB46(1)               ----------->GT1      <------ ---MYB59  <---------------AtSPL3          ------>MYB83    ---------->DOF2       <---------ICU4    -- ->YAB1   <---------AHL20(2)<------MYB46(1)<---------ARR14(2)            <---------ANAC46     -------   acttaaacttatttaagtacgactcagtgttggtactcagaaacctatccacaaaactcacaaaagtattgtattcggtgaaatcactacaatccaaatc  24721500                                  <---------LBD16                       <---------ARR11(3)                       --------->ARR11(3)                      <---------RVE1(1)                      --------->GLK1(1)         --------->KAN4(2)       <---------ANAC58        <---------HSFB2a(1)      <---------ANAC46        --------->HSFB2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <------ZmHOX2a(1)<---------GLK1(1)                        <----------DOF2  <---------LBD16    --------->ARR11(3)               <-----------GT1--------->ETT(2) ---ARR14(2)         <---------ARR11(3)  --------->ANAC58<-----------GT1 ------->ANAC46 <---------ALFIN1 <---------ANAC58    <---------AHL20(2)      <-------TEIL          xx -->ARR14(2)    ----------->RAV1(1)      --------->ANAC58--------->YAB1     --------->CCA1(2)  <-----   caaaccaggaacatacctccacagatatctccatttcgtggataagacacaatttttaatcacatcttttgtcgaaagattcaagagaacatgacaaatc  24721600                                                       <---------GLK1(2)                <-------MYC3                                                       --------->ARR14(2)               ------->MYC3                                                       <---------ARR14(2)              --------->ANAC55(1)                                                       --------->ARR11(3)              <---------ANAC55(2)                        <---------ATHB12              --------->HSFB2a(1)        --------->ANAC58                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------HSFC1(2)         --------->ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)              <---------HSFB2a(1)    <------MYB83            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->HSFC1(2)     <------MYB46(1)           --------->ARR14(2)            <---------RVE1(1)                  <---------------AtSPL3           <---------ARR14(2)           <---------GLK1(2)                   --------->MYB59          <---------CCA1(2)             <---------ARR11(3)  --------->LBD16 --------->MYB46(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ----------->ARR10      --------->MYB111(1)  --------->GLK1(2)   --------->WOX13(1)--------->ARR14(2) <---------HSFB2a(2)  --------->SPL7 <---------GLK1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->HSFB2a(2)<---------SPL7 --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->GLK1(2)   <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ARR14(2)<---------LBD16  <---------MYB55(1) ----ATHB12<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->LBD16        <---------MYB52(1)   aaagattctggcaaatctcttacccaatcaacttcataaccagattttttgtccgaagattctggagaacataatcgtttggtacgaacacgtttctctc  24721700                                                                                                 ----                                                                                       <----------DOF2                                                                                    <---------DOF5.7(2)                                              ----------->GT1                     <---------MYB52(1)                     <------------CBF         <------MYB46(1)              --------->MYB52(1)    <---                    <---------ICU4            <------MYB83                --------->TOE1(2)     -----            ------->TEIL            <------NtERF2                        --------->MYB46(3)     -----         --------->AtLEC2     ---------->DOF2<---------MYB46(3)   ----------->GT1 --------->DOF5.7(2)         --------->ANAC46<---------ANAC46   <--------P       --------->DOF5.7(2) --------->TOE2(3)   cgtcttcgtccatgtaacttcaaaattgcgaagaaagcggcatagagttggtgaaaatgaaacgataactgttaaacaaacgacgttaacttttaaaaat  24721800                                                             <-----------GT1                                                        <---------DAG2                               <---------AHL20(2)    <-----------GT1 ----->ARR11(3)                --------->AHL20(2)   <-----------GT1 ------ARR11(3)      <---------TOE2(3)              <---------AHL20(2)                             -- ---->RVE1(1)       ---------->DOF2            <---------AHL20(1)   --------->YAB1                 <- ---->CCA1(1)     <---------YAB1          --------->ICU4<----------DOF2                     <--------   atctcagtttgtggtcaaatattaaagatggattttaatgggaaattagtatatttaacttttttactaaacataaacatttttgtaaaacctgctttag  24721900                                                               --------->TOE1(3)                                  ---------->DOF2              --------->TOE1(2)                                --------->AtMYB61              --------->TOE2(2)  <---------AHL20(1)         ------>NtERF2                     --------->TOE2(3)  --------->ARR11(3)        <---------ETT(1)              <---------MYB52(2)  --------->AHL20(1)        --------->LBD16       <---------KAN4(2)--------->ZAT6             ------- ------->AHL20(2)       --------->ARR14(2)        <---------ARR14(2)                 --------->AHL20(2) ----------TBP          <---------ARR14(2)        ---------->TaMYB80               <---------TOE2(3) --DOF2              --------->MYB46(3)           --------->ARR14(2)      ---------->DOF2     <------   tttatatattgaataaacttccaacaaatcccgaccaaaagaaaaattagggaatatgcaaataacctaagactaaaaaagaattaagaaaataacatct  24722000                                                                                                    <                                                                                                 ----                                                                                                 ----                                                                                               <-----                                                                                         --------->ARR14(2)                                                                                         <---------ARR11(3)                          <----------DOF2                                                --------->ARR11(3)            <---------At4g35610                                                          <---------ARR14(2)            --------->At4g35610                                                         --------->CCA1(1)   ------------>CBF --------->REM1(1)                                               <---------AHL20(2) -->At4g35610<---------ANAC58            ---------->ID1                             --------->AHL20(2) ---At4g35610<---------ANAC58      <---------DAG2                      <----------DOF2  --------->RVE1(1)   gactaaacaatgtctgcttgctacatgacttttgtcaatttttggcccatatgactcattttctcttcgttctcttttttttttttttaaatatctgcat  24722100                                                                                                   --                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                       xxxxxxxxxxxxxx                                                                     xxxxxxxxxxxxxxxx>smallRNA(i) <--                                              xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxx                                             <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxx           <---------LBD16                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxx         --------->ARR14(2)                  xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxx         <---------ARR14(2)                <-------TEIL             xxxxxxxxxxxxxxxx>smallRNA(i) xxxx         --------->MYB52(1)               <-----------GT1  <----------DOF2 --------->LBD16   <------- <---------AHL20(2)                 --------->AHL20(2)     <---------DAG2  ------>ZmHOX2a(1)<-------- --------->ATHB12                   <---------AHL20(2)  <---------ALFIN1  <---------LBD16   xxxxxxxxx ---------AHL20(2)            --------->AHL20(2)      ------>NtERF2 --------->AHL20(2)xxxxxxxxxxxxxxx ----->AHL20(2)        ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxx ----->ATHB51--------->LBD16  <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx -----DOF2--------->MYB52(1) <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxx   tatttattgaataaccggagaacaaatgtaatttatatttatatatacatttttgcagccactttatgaaataaatcctggagtttggatttatttacag  24722200  Previous    Next  AGI:  At1g66300.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At1g66300 [Arabidopsis Thaliana] (GB:Q9C8Y7); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G66310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 24720160    to: 24721713    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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