Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->ANAC58                                                                                  --------->ANAC46                                                                                  --------->ANAC58                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                           <---------ARR14(2)    <---------LBD16                            --------->ZAT2              --------->ARR14(2) ------>ANAC58                                ------>MYB83----------->GT1 --------->CCA1(2) --------- ------>ANAC58                      ---------->DOF2----------->HVH21<---------HSFB2a(2)--------->ANAC58 ---->CCA1(2)  ---------->DOF2   <----------DOF2<---------ARR11(3)  --------->HSFB2a(2)--------->ANAC46 --ZAT6  <----------DOF2<---------ZAT14       ------>MYB46(1)      <---------LBD16--------->ANAC58   acgaactcgggctttgtcaaagttacttcagagagctttaaagaaaccaagctctcacagttgtaaatttctggatatatacgcactccaggccatgtaa  24718100                                             --------->ANAC46                                             --------->LBD16                                            --------->HSFB2a(2)                           ------->TEIL                                            <---------HSFB2a(2)                      --------->SPL7                                            <---------LBD16                      ------>ZmHOX2a(2)                                      <---------ALFIN1                          --------->CCA1(2)                                    <------ZmHOX2a(2)                           <------ZmHOX2a(2)                                    ==================HOX2a_HOX2a              --------->AGP1                                   --------->ARR11(3)                          --------->ARR14(2)                    <----------DOF2--------->ARR14(2)                       --------->HSFB2a(2)                ---------->ID1     <---------ARR11(3)             <---------ALFIN1  --------->ARR14(2)             <---------DAG2        <---------ARR14(2)        <---------ARR14(2)<---------ARR14(2)      --------->At4g35610          --------->AGP1            --------->ARR14(2)<---------ARR11(3)---- >AtLEC2     <----------DOF2  --------->AtLEC2 <------ZmHOX2a(1)  --------->ANAC46  <---------ARR14(2)   catcgatatgctgaacttttcgcttaatagccatgtagatccacttccaggaacaagtagccaaatccacatccccatccagatccgaaccgcatcttaa  24718200                         ------>ZmHOX2a(2)                       --------->ARR11(3)                       <---------ARR11(3)                                   <---------YAB1                       <---------AGP1                                    ----------->TGA1                      <---------CCA1(2)                            --------->LBD16                     <------MYB46(1)                              <---------ANAC46                     <------MYB83                                 <---------ANAC58                   <--------P                                     <---------ANAC58                  <-------GAMYB                  --------->STY1(2)<---------ANAC55(2)             <---------SPL7                      <---------STY1(2)----------->GT1                 <--            <---------DAG2          ------>MYB46(1)           <---------GLK1(1)              <-------         <-----------GT1<---------GLK1(1)       --------->ANAC58  <---------ANAC55(1)  --------->ARR14(2) ----->TOE2(3)--------->MYB52(1)    ------>MYB83--------->ANAC58  --------->ANAC55(2)  <---------ARR14(2)   cttaaacttgtttaccttacggttggatctcataaacctatcgataaaactagcaagactatcgaattccgtgaaatgacgattatccaaatccaatcga  24718300                             <---------MYB46(3)                          <------MYB46(1)                          <---------ANAC46                                <------ZmHOX2a(1)                          <------MYB83                                   --------->LBD16                         <---------MYB46(3)                           <-------TEIL                   --------------->AGL15                             --------->CCA1(2)                  <-----------------AGL2                             --------->GLK1(2)         ------             <---------CCA1(1)                                      --------->ARR14(2)       <-------             <---------RVE1(1)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ARR14(2)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ARR11(3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->ARR11(3)                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---            <---------ARR14(2)    --------->ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(i)     --------      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <----------DOF2<-----------RAV1(2)---------->DOF2  --------->KAN4(2)<---------------AGL15          <-----------GT1   <---------ARR14(2)   --------->YAB1 <---------HSFB2a(1)     <---------AtMYB61   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <<<<<<<<<ARR2 --------->HSFB2a(1)   <---------MYB52(1)   --------->TOE2(3) --------->ETT(1)          <---------ATHB12 ----ZmHOX2a(1)   <-----------GT1 --------->ANAC58--------->YAB1<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-- --ATHB12 --------->LBD16--------->MYB55(2)<---------ZAT6<xxxxxxxxxxxxxxxxsmallRNA(i) --------->WOX13(1)   ggaacatacctccagatatttctccatttggtggataagacactagtcttaatcacatcttttgtcggaagattcaggagaacaagaacaatcaaagctt  24718400                                                                                <---------ANAC55(2)                                                                                --------->ANAC55(2)                                                                                --------->ANAC46                                                                                --------->ANAC55(1)                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                                <---------O2                                                                                --------->TGA1a                                                                                --------->O2                                                                          --------->ANAC58                                                                      <------MYB46(1)                                                             <---------YAB1     <---------TGA1a                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            <---------At4g35610  ------>ZmHOX2a(2)                                        <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->MYB111(1)                                      <---------MYB52(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   ------>ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   ==========================HOX2a_HOX2a  --------->ANAC58                                   <-------TEIL          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                  <------ZmHOX2a(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  ===========================HOX2a_HOX2a --------->SPL7                                 --------->AGP1  --------->GLK1(2)   --------->MYB59                       xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)   <---------MYB46(3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <---------ATHB12<---------GLK1(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <------ZmHOX2a(1)<---------SPL7                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR14(2)   --------->MYB46(2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-------TEIL <---------ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ALFIN1        --------->ANAC55(2)      <---------ARR11(3)   ==================HOX2a_HOX2a        <---------ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------------AtSPL3     <---------ATHB12xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->GLK1(2)    --------->ANAC46 --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --HSFC1(2)    --------->WOX13(1)<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-----------RAV1(2)<------MYB83 ->HSFC1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->CCA1(2) <---------MYB52(1) -------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->LBD16<---------MYB55(1)   ctggcaaatcacttatccaatcaacttcatcaccagatccgttgtcagaagattcaggagaacatgatcgtttggtacgaacacgtctctctccgtcttc  24718500                                                                                         <---------DOF5.7(2)                                                                             --------------->AtSPL3                                                                             --------------->AtSPL8                                                                             --------->ZAT6 ------->GAMYB                                                                           ------>MYB46(1)  ---------                                       <------MYB83                        --------->MYB52(1)--------             --------->ARR14(2)        ----------->GT1             <---------MYB59 <---------ALFIN1        XXXXXXXXXXXXXXXXXXXX>MIR1888   <------MYB46(1)             --------->TOE2(3)  <----------DOF2     ------->TEIL                    <--------P                    --------->TOE1(3)  <---------DAG2<  --------->AtLEC2           <------NtERF2            --------->DOF5.7(2)<---------MYB59 --------->MYB52(1)  --------->ANAC46     ---------->DOF2<---------MYB46(3)     <---------YAB1------>MYB83--------->DOF5.7(2)   gtccatgtaacttcaaatttgcgaagaaagcggcatagagttggtgaaaatgaaacgataactatgaaacctaaacctaacagtaccactttaacggtaa  24718600           <---------ARR11(3)         <---------MYB52(1)  --------->MYB52(1)                                                      <---------AHL20(1) -->GT1  --------->DOF5.7(2)                              --------->AHL20(2)      <----------DOF2 ->At5g28300  <----------DOF2                             <---------AHL20(2)   <---------AHL20(2) ---------MYB52(2)                             ---------->DOF2       --------->ICU4      <-----------   aaacaaacgtcgttatctttttagaatatttcagtttgtggtcacaaatgaaagatggattttaatgggaaattagtatattttctttgtttattgaaca  24718700                                                            <---------AHL20(2)                                                            --------->ATHB51                                                            --------->ATHB12                                                            --------->YAB1                                                            <---------ICU4                                                            <--------HAHB4                                                            -------->ATHB1                                                            -------->HAHB4                                                           --------->ICU4                                                           <---------ATHB51             --------->ARR11(3)                            <---------YAB1             <-----------ARR10                           <--------ATHB1                      --------             --------->GLK1(2)                           <---------ICU4                     ---------             <---------ARR11(3)                          --------->YAB1               <---------ICU4             <---------ARR14(2)                          --------->ATHB51         <---------AHL20(2)             --------->ARR14(2)                          <--------HAHB4          --------->AHL20(1)   <---------YAB1--------->At4g35610                    <---------ATHB51         --------->AHL20(2)  <---------ARR11(3)              <-----------GT1       --------->AHL20(2)       <---------AHL20(1)  --------->AHL20(1)    <---------AHL20(1)              <---------ATHB12    --------->AHL20(1)  --------->ARR11(3)    <---------ARR11(3)              --------->ICU4      --------->AHL20(2)  <---------AHL20(1)    --------->AHL20(1)            --------->YAB1        <---------AHL20(2)      - <---------AHL20(2)     --------->ARR11(3)          ------------>CBF        <---------AHL20(1)------- -CBF  ----------->GT1 <-----------TBP          --------->YAB1         ------------>CBF----------->GT1   taaatatttttgtaaaatctgctctatatattgaataaaccttctaacaaatataacaataattattagataagacaataaaatataatcagtaaaaagt  24718800                                                                         <---------TOE2(2)                                                                         <---------TOE1(2)                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                 --------->MYB52(2)                                                                 <-----------RAV1(1)                                                           --------->ANAC58                      ----                                                 --------->GLK1(2) ---------->ID1         --------->MYB52(1) ->DAG2                                         <---------GLK1(2)<---------MYB46(3)   <-------TEIL ->DOF2                                     ---------->DOF2--------->ANAC55(2)       --------->CCA1(2) --------->DOF2                         --------->DAG2     --------->ANAC58         --------->ARR14(2) ---->GT1  --------->AtLEC2           ---------->DOF2      <---------ANAC55(2)      <---------ARR14(2)   ataaaagacagccttgcaaattctaaaacagtttgatttcaaaagggaaagaatcccaagtacgcatttgttgcctaggtataccagatacataccagat  24718900                                    <------NtERF2                                    --------->LBD16                                   --------->ANAC58                                   --------->ANAC58                                  <---------LBD16                                 --------->TCP23                                 --------->ATERF1(1)                                 --------->TCP15(2)                                ------>NtERF2           --------->ALFIN1     <---------ATERF1(1)       --------->ICU4           <---------TCP15(1)       <---------YAB1           <---------TCP20    --------->TGA2(2)           <---------PCF5                      --------->ZAT2   <-----------HVH21            --------->PCF2                      <---------ZAT2   <-----------TGA1            --------->TCP16(1)                   --------->At4g35610  --------->ANAC58             <---------PCF2                    <------ZmHOX2a(2)  --------->bZIP60(1)          <-----------TCP11(1)             --------->ARR14(2)  <---------TGA2(1)            --------->TCP15(1)               <-----------HVH21  --------->bZIP60(2)          --------->TCP20                  <---------ARR14(2)  <---------O2                --------->ATERF1(1)         ----------->HVH21  --------->O2                <------NtERF2         <-----------HVH21  --------->TGA2(1)           <---------TCP23    ------>ZmHOX2a(1)  <---------At4g35610 <---------WOX13(1)  --------->ANAC58            <---------TCP15(2) =======================HOX2a_HOX2a   --------->ATHB12  <---------bZIP60(1)    <---------TOE2(3)    ------>NtERF2--------->MYB52(1)        <---------YAB1  --------->ANAC46       <---------TOE1(3)  <---------ANAC58 <---------ANAC55(2)   <----------DOF2 <- <-----------STF1  --------->AHL20(1)  <----------TaMYB80 ----------->TGA1    <---------AHL20(2)   <- ------>DOF2  <---------PCF2--------->ALFIN1<---------ANAC58 --------->ANAC55(2) <---------YAB1    <-   aaagacgtcataagtgggacatatattaaggtggggcccgcatattgcctcctctgtctcatgacggatcagctcagcattttatctttgattgctcatt  24719000  Previous    Next  AGI:  At1g66290.1    Description:  F-box family protein. Identical to Putative F-box/FBD/LRR-repeat protein At1g66290 [Arabidopsis Thaliana] (GB:Q9C8Y8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G66320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 24716969    to: 24718506    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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