Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                 <--------P                                                                <-------GAMYB                                                                <---------ANAC58                                                                <---------ANAC58                                                               <------MYB83                                                               <---------DEAR3(2)                                                               <---------MYB46(3)            --------->ALFIN1                                   --------->MYB52(2)           <-------MYC3                    <---------AtMYB61   --------->MYB55(2)           ------->MYC3                  <----------DOF2       <------MYB46(1)          --------->O2                 <------NtERF2          <---------AtMYB61       <---------WRKY12               ------>NtERF2           --------->MYB111(1)   <---------MYB46(3)                 <---------RAP2.3(1)    <--------P   <---------DEAR3(2)                <---------RAP2.3(3)    <-------GAMYB  <---------ATERF1(1)  <---------DEAR3(1)--------->ANAC58 <---------RAP2.3(2)   <------MYB46(1)--------->DEAR3(1)        - <---------MYB52(1) --------->ANAC58 <---------DEAR3(1)    <------MYB83<---------DEAR3(1)        ---- -----------HVH21<---------ARR14(2)  <---------RAP2.6(2)   <---------MYB46(3)          <---------YAB1 ------->DEAR3(1)--------->ARR14(2) --------->RAP2.6(3)    --------->MYB55(2)    <---------YAB1  <--- >GLK1(1) <---------O2              --------->ATERF1(1)   <---------AtMYB61------>NtERF2         <---   accgtcggttcaacgtggggattcgcaagaagcttgaaggcggctttggtgaagtcttgggaggttggttgcttcggcgacttctgattatccatgggaa  24598800                   <------ZmHOX2a(2)                  --------->ARR11(3)                 --------->GLK1(1)              --------->LBD16             --------->LBD16            --------->HSFB2a(2)            <---------ANAC46            <---------ANAC58            <---------ANAC58           <---------LBD16                                                                    <------MYB83         <---------ARR14(2)                                                    --------->ANAC58   <--       --------->HSFB2a(1)                                                     --------->ANAC46   ---       <---------HSFB2a(1)                                                     --------->ANAC58   ---       --------->HSFC1(2)                                                 <---------ARR11(3)  <------MYB46(1)       <---------HSFC1(2)                                                <---------CCA1(2)   --------     ---------->DOF2                                                   --------->CCA1(2)<---------AHL20(2) -------->MYB52(1)<---------ARR11(3)                ----------->GT1   --------->ARR11(3)--------->AHL20(2) ------->GT1<---------LBD16                       ---------->DOF2    <<<<<<<<<RAP2.2   --------->AHL20(2) ---MYB83--------->ARR14(2)                   >>>>>>>>>TBF1      <----------DOF2  <---------TOE1(2) ---MYB46(1)<---------HSFB2a(2)    --------->MYB52(1)      <-----------GT1--------->ARR11(3) <-------   ggtaacagaaagttccgggagatcaatagagtctataaaacggttgaagaagaaaagtatatcactgctttagatatatctacgcacgattaaattaggt  24598900                                                 <------ZmHOX2a(1)                                            --------->ATHB12                                            -------->HAHB4                                            --------->YAB1                                           --------->ICU4                             <---------------AGL15                 <---------DAG2                   <      <---------DAG2         --------------->AGL15                 <----------DOF2                  -      <----------DOF2        ========================================================================   <-----------GT1     <---------AHL20(2)  <---------YAB1    <-----------GT1                        < -------MYB46(3)   <---------AHL20(2)    --------->YAB1 <---------CCA1(1)                           - ------>MYB52(2)   --------->AHL20(2) <------ZmHOX2a(1) <---------RVE1(1)                    <------- -------->GT1     <---------AHL20(2)  --------->YAB1   <---------ARR11(3)                   <<<<<<<<< ->MYB59       <---------AHL20(2)    <---------YAB1    --------->ARR11(3)               <---------RVE1(1) --TOE2(3)    <---------AHL20(2)    <---------TOE2(3) <------ZmHOX2a(1)                 <---------CCA1(1)   ttgttaaacttttttttttatttatttttttctaaaattaggataatgataggataggatatttttctgcttttttttgtttttagttggatatttttct  24599000                  <---------AHL20(2)                 <---------AHL20(2)                 --------->AHL20(2)              --------->YAB1              --------->ATHB12              <---------ICU4             <---------ATHB12             --------->ICU4           <---------GLK1(1)       --------->HSFB2a(2)                                    <---------ARR14(2) <---------ICU4--------->TOE2(3)                              --------->ARR11(3) --------------->AGL15                                       --------->RVE1(1) <---------------AGL15                                       --------->CCA1(1) -----------------AGL3                                     <---------GLK1(2) ---------------->AGL2                        --------->GLK1(2)             --------->ARR11(3) ================MADS_MADS                   <---------ARR11(3)             <---------ARR11(3) -----------------AGL1                       <---------GLK1(2)<---------ARR11(3)----------->GT1 ---------------->AGL1  ------->TEIL         --------->ARR11(3)             <---------ARR14(2) ----GT1   --------->GLK1(1)  <---------HSFB2a(2)      ---------->DOF2    ----------->ARR10 <GT-3b<---------HSFB2a(2)    --------->HSFB2a(2)<---------YAB1 --------->TOE2(3)     <---------AHL20(1)   tcaccattactggaaatcattaaatgaatcttcttgaagttttaaaagattcttataaaaagaatatcttagagagtagatattgtaacatatttaagag  24599100                                                  --------->WOX13(1)           --------->GLK1(2)                                                 <---------ICU4         ---------->DOF2                      <---------ATHB12     --------->TOE2(3)          ------>ZmHOX2a(1)              --------->YAB1               <----------DOF2           --------------->AGL15              --------->AHL20(2)<---------YAB1  <---------ATHB12   <---------------AGL15 --------->REM1(1)  --------->WOX13(1) <----------DOF2             --------------->AGL15          <--   tctacattacagagaattatatcaatcaattcatatgattactttctttaatcaatcccactaatctttctcctaaaagagaatgtggaagaggctgaag  24599200                          ----------->RAV1(1)                      --------->WOX13(1)                     <------ZmHOX2a(1)                           ------------>CBF                 --------->LBD16                    --------->ANAC58                <---------HSFB2a(2)                 --------->ANAC58                --------->HSFB2a(2)                 --------->ANAC46 <---------ATHB12        <-------               <---------LBD16                  >>>>>>>>>TBF1  ------->GAMYB   --------->AHL20(2)          <---------ARR11(3)                 >>>>>>>>>TBF1     --------->AtMYB61       --------->ZAT14       *TSS  <---------SPL7               >>>>>>>>>TBF1       <---------MYB55(2)  ------------>CBF  < -------MYB46(3)<---------ANAC46      --------->LBD16         --------->MYB46(3) <-----------GT1 <---   ttgttgacacaatgtcttccggaggaaacaacacagagtccgaagaagaagaagaagcaactcaaccaccaattaagaagattaaacaatacagtcactg  24599300                                     ------>ZmHOX2a(1)                                     <---------MYB52(1)                                    --------->TOE2(3)              <-----------GT1   <---------GLK1(1)   <---------MYB46(3)   <------ZmHOX2a(1)                    ------>ZmHOX2a(1) --At5g28300 --------->AHL20(2)<---------ZAT6          <---------YAB1 ---------MYB46(3)    --------->ANAC58               --------->YAB1 --------RAV1(1)      --------->ANAC58               <---------ICU4      <----------DOF2        <----   tgttgttgttggaaattaactagtaaggaattagagttccttagttaaaaactcatcatcatcctcccatgaattctttatgtcattcccattcacatct  24599400                                   <---------ANAC58                            --------->ARR11(3)                            <---------ARR11(3)                           --------->YAB1                          <---------YAB1                        --------->YAB1                        <---------ICU4      <---------TOE1(3)                       <---------YAB1       <---------TOE2(3)        --------->YAB1                       --------->ICU4--------->ALFIN1      --------->TOE2(3)                ---------->DOF2    <---------ANAC46       --------->ZAT6<-----------GT1 ------DOF2 <---------TOE2(3)      <---------ANAC58      <---------TOE2(3)     --------->YAB1   ttatgttattagctaatgtaaagtcatgatgatattagcgtgtttcaaggtttactactaacattagcgaattgtaacgaatcaacattttctctcttac  24599500                                                                                               ------                                                                                               <-----                                     --------->ANAC58                                          <-----                                     --------->ANAC58                            <------ZmHOX2a(2)                        ----------->RAV1(1)     --------->YAB1                  --------->AGP1 ------                --------->ATHB12  --------->ZAT18               ---------->DOF2--------->At4g35610---             ---------->DOF2      <---------ZAT18           ------->GAMYB<---------AHL20(2) ---------            <---------AHL20(2)   --------->ANAC58          --------->MYB46(3)--------->YAB1<---------ATHB51            --------->AHL20(2)   --------->ANAC58         -------->P    --------->AHL20(2) <---------ATHB12   tcaagaggcagtatttaaagattggacaacatgaaacgcactcatgtctataagaaattcaacccccaaagagatttaatcagatcaatgtcaataataa  24599600                                   --------->MYB46(3)                                  ------>MYB83                                  ------>MYB46(1)                               --------->AtMYB61                                 ----------->RAV1(1)                         ------>MYB46(1)           <---------DAG2       --------->AtMYB61                            ------>MYB83   <---------LBD16              ------->GAMYB                              --------->AtMYB61 --->AHL20(1)                  <---------MYB55(2)                          <---------MYB59 ----AHL20(2)                  --------->MYB46(3)                     --------->HSFB2a(2) ----AHL20(1)                  <---------MYB52(2)                <---------ARR14(2)              <--- --->AHL20(2)          <---------DAG2                            --------->ARR14(2)       --------->HSFC1(2) ------>AHL20(2)       <----------DOF2                           <---------GLK1(1)        <---------HSFC1(2) >YAB1     <----------DOF2    --------->ANAC46     <---------ICU4--------->GLK1(1)     ---------->DOF2   atttatacggacactttaagtatagctttttcaaccaacaaatagaaccaaaaacatgactctagagaattcccagaccaaaccaaaacaaaagcttccc  24599700  Previous    Next  AGI:  At1g66060.1    Description:  binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G66000.1); contains InterPro domain Protein of unknown function DUF577 (InterPro:IPR007598) Range:  from: 24597578    to: 24599207    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g66070.1    Description:  translation initiation factor-related. similar to translation initiation factor-related [Arabidopsis thaliana] (TAIR:AT5G37475.1); similar to unknown [Populus trichocarpa] (GB:ABK92969.1); contains InterPro domain Translation initiation factor eIF3 subunit (InterPro:IPR013906) Range:  from: 24599549    to: 24602181    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version