Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------AHL20(2)                     --------->AtLEC2                                     --------->AHL20(2)              <---------ICU4                                           --------->YAB1              --------->ATHB51                                     <---------AHL20(2)              <---------AHL20(2)                                  <---------ARR11(3)              --------->AHL20(2)                                  --------->AHL20(2)           --------->YAB1                                         <---------AHL20(2)                <           <---------ICU4                                         --------->ARR11(3)               <-          --------->AHL20(2)<---------ICU4                        <---------AHL20(1)               -- --------------->AtSPL8     -------->ATHB1                        --------->AHL20(1) ------->GAMYB -- ------>HVH21--------->ICU4<---------ATHB12                   <---------AHL20(2)    --------->MYB46(3) >ATHB12  <---------AHL20(2)--------->ATHB12                 --------->AHL20(2)     <---------MYB52(2)   gacaatgtactattaattatttcatacaaatcattgaaattttggtagcaaatttttgaagtatttaatatatttataaaatttcaacaaacaattgcca  24592800                                               <---------YAB1                                             <-----------GT1                                          --------->YAB1                                          <---------ICU4                                          <--------HAHB4                                          -------->ATHB1                                          -------->HAHB4            --------->AHL20(2)            --------->ATHB51           <---------AHL20(2)            <---------ATHB51                     <----------DOF2           --------->AHL20(2)      --------->GLK1(2)                      <---------O2          --------->AHL20(2) <-----------GT1<---------YAB1                <---------ANAC55(2) ---------YAB1           <----------DOF2 <---------YAB1                   ===============bZIP_DOF --------AHL20(1)        <---------DAG2  --------->ICU4                   --------->ANAC55(2)     --- ------->AHL20(1)    <---------MYB52(1)  <---------ATHB12                 --------->TGA1a       ----- ------->AHL20(2)  ----------->GT1 <---------ARR11(3)                     --------->O2       --------   atataatacaaaattaatatacagttacttttcacaaaatctaattattactcttgttttgttttcttcttaaatcacgtctttctcatttacatttaca  24592900                                                                      <---------AHL20(1)                                                                      <---------ARR11(3)            --------->YAB1                                            --------->ARR11(3)        --------->ICU4                                                <---------AHL20(2)      <---------ICU4                                                  --------->AHL20(1)      <---------AHL20(2)                                              --------->AHL20(2)     --------->AHL20(2)                                           <---------AHL20(2)  <---------AHL20(2)                                             <---------AHL20(2)  --------->AHL20(2)                                             --------->AHL20(2)         --------- --------->AHL20(2)                                 <----------DOF2  --------->AHL20(2)     --------- <---------AHL20(2)                   <---------WRKY18(1) ----------->GT1                   --------- ------>AHL20(2)     ----------->GT1 --------->WRKY12    <---------TOE2(3)              <-----------GT1 ---->TOE2(3)  ---------->DOF2       --------->WRKY38(1) <---------TOE1(3) --------->MYB52(2)       < ->AHL20(2)<---------YAB1  --------->YAB1   ---------->DOF2<------ZmHOX2a(1)           ---------->ID1   taaattaataaatatgataaagaaggtaataagaaaatgttgacccaaaagcagcttttaaggaaaattaaatatattagttgccatttgtcacaatcca  24593000                    <---------CCA1(1)       <---------CCA1(2)    <----------DOF2         <---------ICU4                               <---     <---------CCA1(2)   <-----------GT1           <---------ATHB12                              <--- >ANAC58            <---------RVE1(1)        <-----------GT1                           ------>NtERF2- >ANAC58           <---------ARR11(3)   --------->ARR11(3)                            --------->ANAC58 >ANAC46   <----------DOF2---------->ID1<---------ARR11(3)                            --------->ANAC46 ---------GLK1(2)  --------->ARR11(3)  <------ZmHOX2a(1)                              --------->ANAC58   caaattcttatctctttgtgagatttttttctttttttgaaggatttttacaaatcattttgaattcgtcttcccaaaatttcaaaacccgcctcttcac  24593100         ------>ZmHOX2a(1) <-----------GT1 ------DAG2 -------DOF2              <---------CCA1(2)       *TSS --------->ID1         --------->TOE2(3)  <---------ETT(2)                               <<<<<<<<<<<<   ttttcgccttcctctacttatttagcctaaatctctcacaaatctcgacaacaccattttctctctaaatctctctctcactcactcgtttcaacaatgg  24593200                                                                                       ----------->RAV1(2)                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                ===================RAV                                                                                --------->ALFIN1                                                                                <-----------RAV1(1)                                                                               ------->MYC2                                                                               <-------MYC3                                                                               ------->MYC3                                                      <---------ARR14(2)       <-------MYC2                                                 <---------At4g35610          --------->TGA1a                                                 <---------ZAT2               <---------O2                                                 --------->O2                 --------->ANAC55(2)                                                 --------->At4g35610          <---------ANAC55(2)                                                 ----------->GT1 <---------At4g35610   <---------ZAT2                      <---------ANAC46       ------>NtERF2       --------->At4g35610  ------>NtERF2                   ----------->HVH21        ----------->HVH21  =============================RAV               <---------ANAC58           <---------ANAC58     <-----------RAV1(2)--------->ALFIN1               <---------ANAC58           <---------ANAC58------>ZmHOX2a(1)   <---------ANAC58          --------->ZAT2                 <---------DEAR3(1)  <-----------HVH21--------->O2  <--------          --------->At4g35610         ------->TEIL    --------->ARR14(2)      <---------ANAC58          <---------ZAT2    <---------DEAR3(1) <-----------RAV1(2)            <---------ANAC46  ----- <<<<<LFY <---------At4g35610     ------->TEIL<------NtERF2 --------->ANAC46  <---------TGA1a   -----   cgattcaaactcagcttccttgcgacggagacggtgtatgtatgcggtgccaggtgaatcctccgtcagaagagactctcacgtgtggcacctgtgtcac  24593300           <---------bZIP60(2)           <---------ANAC58           <---------TGA1a           <---------O2           <---------ANAC58           <---------ANAC46        ----------->HVH21       ------->PIF5       <-------PIF5                                                                                --       ------->MYC4                                                                               <--       <-------MYC4                                                                            ------       ------->MYC2                                                                            <-----       <-------MYC2                                                                           -------       ------->MYC3                                                                           <------       <-------MYC3                                                                           ------>NtERF2       <-------PIF4                                                                           -------       ------->PIF4                                                                          <-------      <---------ANAC55(2)                                                                    --------      --------->TGA1a                                                                        <-------      <---------TGA1a                                                                       ---------      <---------O2                                                                         ------>NtERF2      --------->O2      --------->LBD16                                       <---------MYB46(3) <---      --------->ANAC55(2)                                                ------>NtERF2     <---------ATERF1(1)    <------------OsbHLH66                                                --------->LBD16  --------->DEAR3(1) --------->ANAC46       ------>ZmHOX2a(1)                  --------->ZAT18  <-------GAMYB --------->ANAC46 ---HVH21<-----------HVH21                                --------->ALFIN1 <---------ANAC46--------->LBD16 ---->ANAC58          ----------->RAV1(2)     --------->ZAT14           <---------DEAR3(1)<---------ALFIN1 ---->ANAC58        ------>ZmHOX2a(1)   >>>>>>>>>>>>>>>>>LFY           <---------LBD16   --------->SPL7   tccatggcacgtgtcgtgtctccttcctgaatcactcgcttcttccactggagactgggagtgtcccgattgctccggcgttgttgttccctccgccgct  24593400          <---------HSFC1(2)          --------->HSFB2a(1)          <---------HSFB2a(1)         --------->ARR14(2)        <---------GLK1(2)        --------->ARR14(2)        <---------ARR14(2)      --------->LBD16                                                                  --------->At4g35610    <---------LBD16                                                                    <---------At4g35610   --------->MYB52(1)                                                                  --------->ZAT2 ------->LBD16                                                                  <---------WRKY18(1) -------ANAC46         <---------ARR14(2)                                      --------->WRKY12 --->ARR14(2)          --------->ARR14(2)                      <-----------RAV1(2)-------->ZAP1 ----ARR14(2)          ------->TEIL                          --------->GLK1(2) --------->WRKY45 -->At4g35610         <---------CCA1(2)                --------->LBD16         --------->WRKY38(1) ---At4g35610         <---------GLK1(2)               <---------ANAC58       <----------DOF2 -->ABI4(1)      ------->TEIL                         <---------ANAC58   ----------->HVH21     ------ --ATERF1(1)     --------->ARR14(2)                   <---------ANAC46 <---------bZIP60(1)     ------ ->DEAR3(1)      <---------ARR14(2)                  ------>ZmHOX2a(2) <---------TGA1a <---------ZAT2 --ALFIN1---------->TaMYB80      <-------TEIL       <------ZmHOX2a(2)  --------->bZIP60(1)   -------- >RAP2.3(1)    --------->LBD16--------->LBD16      --------->ARR14(2)  =================bZIP_DOF ------LBD16 <---------LBD16<---------LBD16        <---------ARR14(2)  ==============================   ccgggtaccggaatctccggacctgaatcttccggttcagttctcgttactgcgatccgtgcgattcaggctgatgtgactttgaccgaagctgagaaag  24593500                               ----------->TGA1                               ----------->HVH21                             <---------MYB46(3)                            <---------ANAC46                            --------->ALFIN1                            <---------AtMYB61                          <---------MYB46(3)                         --------->ALFIN1                         <---------DEAR3(1)  --------->DAG2         <---------AtMYB61 ---------->DOF2      <---------AtMYB61                                        ---------->ID1 --->ANAC58        --------->ATHB12                                       <----------DOF2 --->ANAC58       <---------YAB1               --------->YAB1          --------->ARR11(3) -->DOF2  <------NtERF2<---------MYB46(3) <------NtERF2---------->DOF2 <---------ARR11(3) ===========bZIP_DOF  --------->ALFIN1  <---------ANAC46              <---------GLK1(1)   ccaaaaagaggcagagactgatgagtggtggtggtgacgatggtgtcgatgatgaagaaaagaagaagttagaaatcttttgttctatttgcattcaatt  24593600                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                     --------->ARR14(2)                         <-----------GT1                             --------->ARR11(3)                   --------->MYB52(2)                                <---------ARR14(2)                 <--------P                                --------->ARR11(3)                 <---------MYB52(1)                        <---------ARR11(3)                --------->At5g28300                 <---------ZAT6   --------->AGP1                <-------GAMYB--------->ANAC58   <---------ANAC58     <---------AGP1              <---------ANAC46                  <---------ANAC46     <---------ARR11(3)              <---------TOE2(3)          <---------ANAC58  <---------AHL20(1)             --------->ANAC58              <---------TOE1(3)        <---------YAB1      --------->AHL20(1)             --------->ANAC58             <---------At5g28300    <---------AHL20(2)    --------->RVE1(1)             ---------->DOF2          <-----------HVH21  --------->ANAC58   <---------ANAC58    <---------CCA1(2) --------->ANAC46      <-----------------------TaNAC69(2) <---------ANAC58 --------->CCA1(1)    <---------ICU4   gccagagagacctgttacggttagttttcactcgctaatttatgcttgtgacttgtgttaatatcttgttagatcttgtgatcaatacacataagcccta  24593700  Previous    Next  AGI:  At1g66050.1    Description:  VIM2 (VARIANT IN METHYLATION 2); protein binding / zinc ion binding. similar to ORTH2/VIM1 (VARIANT IN METHYLATION 1), DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding [Arabidopsis thaliana] (TAIR:AT1G57820.1); similar to ORTH1/VIM3 (VARIANT IN METHYLATION 3), methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G39550.1); similar to VIM4 (VARIANT IN METHYLATION 4), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G66040.1); similar to Os Range:  from: 24593150    to: 24596410    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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