Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ZAT6 ---------TGA1 ----->ANAC46 ----->ANAC58                                                          --------->ANAC58 ----->ANAC58                                                          --------->ANAC58 ------ANAC55(2)                                                 ------>ZmHOX2a(2) ----->ANAC55(2)                                                <------ZmHOX2a(2) ----->TGA1a                                                    --------->CCA1(2) ------O2 --------->ANAC58                                     --------->ARR11(3)            -------- ----->O2 --------->ANAC46                                     <---------AGP1              --------->ANAC58 ----->bZIP60(2)      --------->AHL20(2)             --------->ICU4    --------->ANAC46    --------->ANAC58 ----->ANAC55(1) --------->ANAC58             <---------ANAC46 <---------ARR14(2)   --------->ANAC46 -------STF1     --------->ANAC58          <----------DOF2     --------->ARR14(2)   --------->ANAC58 ----GT1  --------->ANAC58                <---------ANAC58     --------->AGP1   --------->ZAT6  ----- ------>TaNAC69(2) --------->YAB1         <---------ANAC58     <---------ARR11(3)   --------->ANAC58   cgtcattaacacaagtcacaagcataaattagcgatttagtagggcttatgtgtattgatcacaagatctaacaagtcattaacacaagtcacaagcata  24589900                ------->TEIL     ----------->GT1 <-----------HVH21                        --------->GLK1(1)   <---------ANAC58 ----------->HVH21                        <---------ARR11(3)                    <-   <---------ANAC58<-----------HVH21                         --------->ARR11(3)              ------>NtERF2 ->YAB1      <---------MYB52(2)                          ---------->DOF2             <---------YAB1<- ---->AHL20(2) --------->MYB52(1)                   <----------ID1          <----------DOF2 ---------   aattagcgagtgaaaacgaaccgtgacaggtctctctggcaattgaatgcaaatagaacaaaagatttctaacttcttcttttcttcatcatcgacacca  24590000              --------->YAB1                                 --------->bZIP60(1)             <---------ATHB12                            <-----------HVH21             <---------ZAT2          --------->AtMYB61                           =================bZIP_DOF        <---------At4g35610          <---------ALFIN1                            ---------->DOF2                  --------->ZAT2       <---------ALFIN1                             --------->WRKY18(1)            ------>ZmHOX2a(2)       --------->AtMYB61                           <--------ZAP1                  <------ZmHOX2a(2)       --------->DEAR3(1)                    <---------ZAT2  <---------bZIP60(1) --------->ARR14(2)      --------->MYB46(3)                     --------->At4g35610              --------->ANAC46    <---------ALFIN1                  <----------DOF2<---------WRKY12         --------->ANAC58    --------->AtMYB61                <---------ANAC58<---------WRKY38(1)      --------->ANAC58    --------->ANAC46                 <---------ANAC58<---------WRKY45  <---------GLK1(2)   --------->MYB46(3)         <----------DOF2--------->ZAT2  --------->TGA1a <---------LBD16 ----------TGA1               =========================================bZIP_DOF  <-----------ARR10 ----------HVH21         ------>NtERF2=================================bZIP_DOF  <---------ARR14(2) >ANAC46 --------->MYB46(3)   <---------DAG2 <---------At4g35610   ----------->RAV1(2) --------->At4g35610   tcgtcaccaccaccactcatcagtctctgcctctttttggctttctcagcttcggtcaaagtcacatcagcctgaatcgcacggatcgcagcaacgagaa  24590100                                       <---------DEAR3(1)                                       --------->ALFIN1                                       --------->ATERF1(1)                                      --------->At4g35610                          <---------LBD16                        --------->GLK1(2)   <------NtERF2                        --------->ARR14(2)<---------DEAR3(1)                        <---------ARR14(2)--------->ALFIN1                      --------->HSFB2a(1) <---------ANAC46                      --------->HSFC1(2) --------->ATERF1(1)                      <----------TaMYB80<---------RAP2.3(1)                      <---------HSFB2a(1)<------NtERF2                 <---------LBD16      <---------At4g35610               <---------ARR14(2)     <---------ABI4(1)       <------NtERF2           <-------TEIL<---------ARR14(2)<---------LBD16     --------->LBD16          --------->GLK1(2)          <---------ARR14(2)     --------->DEAR3(1)          --------->CCA1(2)          --------->ARR14(2)    <---------LBD16         <---------ARR14(2)        --------->LBD16        ------->GAMYB         --------->ARR14(2) --------->LBD16<---------SPL7--------->ANAC46            <<<<<<<<<<<<<<<<    --------->LBD16--------->LBD16--------->ANAC46 --------->ANAC58               --------->ARR14(2)  <---------LBD16<-------TEIL<---------MYB52(1)    --------->ANAC58       <---------ALFIN1 ------->TEIL  --------->ARR14(2)<---------LBD16  --------->SPL7         <---------ZAT18   ctgaaccggaagattcaggtccggagattccggtacccggagcggcggagggaacgacaacgccggagcaatcgggacactcccaatctccagtggaaga  24590200                           ------->PIF5                           ------->MYC3                           ------->MYC4                           <-------PIF5                           <-------MYC4                <-------MYC3                           <-------MYC2                ------->MYC2                           <-------MYC3                ------->MYC3                           ------->MYC2               <---------TGA1a                           ------->PIF4               --------->ANAC58                     --------->DEAR3(1)                          <---------O2                <---------O2                 ----------->RAV1(2)                          --------->O2                --------->O2                 --------->TGA1a                          --------->TGA1a             --------->TGA1a              <---------O2                          <---------TGA1a             --------->ANAC58             <---------ZAT2                          <---------ANAC55(2)         --------->ANAC55(2)          <---------At4g35610                          --------->ANAC55(2)         --------->ANAC46             <---------TGA1a                      <-----------HVH21           ----------->RAV1(1)              --------->At4g35610                     --------->O2                 =============================RAV --------->ZAT2                     --------->bZIP60(2)     --------->At4g35610                   <---------bZIP60(2)                     --------->TGA1a<---------ANAC58  <---------ANAC55(2)          --------->O2                     --------->ANAC46        --------->ZAT2                     ----------->HVH21                     --------->ANAC58        <---------At4g35610               <-----------HVH21    <                     --------->ANAC58      <-----------RAV1(2)                --------->ALFIN1  <----                     ----------->HVH21----------->HVH21<-------MYC2     <---------ANAC46  --------->ANAC58               <------ZmHOX2a(1)    <---------ANAC58<---------ALFIN1 ----------->HVH21    <------NtERF2           <------ZmHOX2a(1)   <---------ANAC46   <---------ALFIN1 ----------->RAV1(2)    --------->ANAC58        <---------LBD16  ------------>OsbHLH66   <------NtERF2     <---------At4g35610   ------>NtERF2 <LFY   <-----------RAV1(2)<-------PIF4    ===================RAV  --------->At4g35610<-----------HVH21   agcgagtgattcaggaaggagacacgacacgtgccatggagtgacacaggtgccacacgtgagagtctcttctgacggaggtgtcacctggcaccgcata  24590300                      <---------ZAT2                      --------->ZAT2                      --------->At4g35610                 --------->ANAC58           <-----------HVH21                                                                        -    --------->DEAR3(1)<---------At4g35610            --------->ALFIN1                              -- -------TEIL     --------->ANAC58                    <---------ZAT6                             <---- ---TEIL  --------->ANAC46          >>>>>>>>>>>>>>>>>LFY                             --------->CCA1(2)   catacaccgtctccgtcgcaaggaagctgagtttgaatcgccattgttgaaacgagtgtgagagatagagagagaggtgttatcgagagatgagaagagg  24590400                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                ----- <----------ID1               <-----------RAV1(1)                                        ----------->GT1 ----------->GT1<---------ANAC46                              <---------AHL20(2)       ---------->DOF2 ---------->GT1 <---------ANAC58       ----------->GT1        --------->AHL20(2)   <---------AHL20(2) --------->GT1  <---------ANAC58  <---------LBD16       <---------ANAC58          --------->AHL20(2) --ZmHOX2a(1)   <---------ANAC55(1)<---------HSFB2a(2)  <---------ANAC58          <---------AHL20(2)   aaggggaaaaatgaagaggcgtgttttgaaatttgttggggaagaaaaaaaaacgagagcgtatttaaaaagtttcaaaacgaattaaataaagaaaaaa  24590500                                                   --------->AHL20(2)                                                   <---------AHL20(1)                                               <---------AHL20(2)                                              <---------AHL20(2)                                 <---------GLK1(2) <---------AHL20(2)                         <------                           ----------->HVH21  <---------AHL20(1)                             --------                         --------->O2         --------->AHL20(2)                            <--------                         <---------ANAC58     <---------ARR11(3)                            ---------                         <---------ANAC58     --------->ARR11(3)                            ---------                         <---------O2         --------->AHL20(1)<------------CBF          ------->TEIL ------ARR11(3)   ------>ZmHOX2a(2)     <---------At4g35610  ------>ZmHOX2a(1)      ----------->HVH21 ----->ARR11(3)  <------ZmHOX2a(2)      <---------ZAT2      --------->TOE1(3)    --------->AHL20(1) ---->RVE1(1)   --------->ARR11(3)      --------->At4g35610 --------->TOE2(3)   --------->AHL20(2) ---->CCA1(1)   <---------ARR11(3)      <------NtERF2    <-----------GT1  <-----------HVH21 <--------   atctcacagtctcgataagatcgtgagtcgtgacagaatggcagctaatatattttatttttccttaattgttttgggtcaaatatatgacgaatttatt  24590600                       <---------YAB1                     --------->ATHB12                  --------->ANAC55(2)                                         <---------WOX13(1)                  <---------ANAC55(2)        --------->AHL20(2)            <---------YAB1                  ==========================bZIP_DOF                <---------AHL20(2)   ----------->GT1<---------O2 <---------MYB46(3)                   --------->AHL20(2) ------CBF        <---------TGA1a  --------->ATHB12                 --------->AHL20(1) ->ATHB12         --------->O2<---------AtMYB61                     <---------AHL20(1) -AHL20(1)        ----------->GT1<----------DOF2                   --------->AHL20(2)               - >AHL20(1)   ===============bZIP_DOF<------------CBF          --------->AHL20(2)        <---------AHL20(2) >AHL20(2)   ---------->DOF2<---------MYB46(3)                <---------AHL20(2)       <---------AHL20(2) -AHL20(2)--------->YAB1   <---------AtMYB61 <---------AHL20(2)    <---------AHL20(2)  --------->AHL20(2)   gcaaaatgtaaatgataaagacgtgattagtggtggtttattggaaaataaatgtttctcaaatttaaattaaatttgtaattggttttttaaatttcaa  24590700          <---------AHL20(2)              --------------->AGL15   <-----------HVH21      <---------AHL20(2)          <---------TOE2(3)            --------->At4g35610     <---------ARR11(3)     <---------YAB1<---------------AGL15<---------At4g35610     <---------AHL20(1)  <---------AHL20(1)      --------->ANAC55(2)     --------->ARR11(3)  <---------AHL20(2)      <---------ANAC55(2)                   <---------ANAC55(2)   ------->TEIL          --------->AHL20(2)  --------->YAB1  <---------ZAT14    <-----------GT1 ---------->GT1   ------->TEIL    <---------TOE1(3)    --------->YAB1 ----------->GT1  --------->ANAC55(2)   aaatgtatatatttaaaacgaacatattttatttttgaggtttactaaaataagtaatagtagtatgctgtcaagttatattaaacaatatgtgattagt  24590800  Previous    Next  AGI:  At1g66040.1    Description:  VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding. similar to ORTH2/VIM1 (VARIANT IN METHYLATION 1), DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding [Arabidopsis thaliana] (TAIR:AT1G57820.1); similar to VIM2 (VARIANT IN METHYLATION 2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G66050.1); similar to ORTH1/VIM3 (VARIANT IN METHYLATION 3), methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G39550.1); similar to Os Range:  from: 24587483    to: 24590344    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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