Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------YAB1                                                  --------->YAB1                                                --------->AHL20(1)                                  <-----------GT1<---------YAB1                                    <-                  --------->WOX13(1) <----------DOF2--------->ICU4                                 <-     --------->GLK1(2)     --------->ANAC58     --------->AHL20(2)                       <---------AHL20(2)    <---------GLK1(2)      --------->ANAC46     <---------AHL20(2)     ----------->GT1  --------->AHL20(2) -------ZAT6 --------->ICU4--------->ANAC58    --------->YAB1  ---------->DOF2   ------->TEIL     ---   gagttagaatctacaaagattaatcaaacacacaataaactttatagaattataatgagtagaacaaaagaaatagttatatgaactcgttttaatttgc  24579300           <---------AHL20(2)         <---------YAB1       <---------AHL20(2)       --------->AHL20(2)      <---------AHL20(2)      --------->AHL20(2)      <---------AHL20(1)   <---------AHL20(2)      <---------AHL20(2)   --------->AHL20(2)      --------->AHL20(2)   --------->AHL20(1)   --------->TOE2(3)         <---------TOE2(3)    <---------ANAC46  <---------AHL20(2)   ----------->GT1            <---------TOE1(3)    <---------ANAC55(2)  --------->AHL20(2)  <---------TOE2(3)          --------->MYB52(1)    <---------ANAC55(1) -------HAHB4       <---------AHL20(2)         <---------MYB52(2)      --------->ANAC55(2)         -- --------ICU4   --------->AHL20(2)    ---------->DOF2             <---------ZAT6           ---------- ------>ICU4    <---------AHL20(2)   <---------AHL20(2)  <-----------GT1    <---------------------WRI1   ataattaaattattttttttaaataatgttaaattagatttaaagaaaaactaacgtttttacaaatagtgttatgtgtttgatacaaacaaattgaaaa  24579400                                                      <---------STY1(2)                                                      --------->STY1(2)           <---------ANAC55(2)                                                  --------->ATHB12                <---------ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <------ZmHOX2a(2)                 <---------ANAC58                 --------->YAB1        <---------ARR14(2)                 <---------ANAC46                <---------YAB1         --------->ARR14(2)              <---------GLK1(1)                --------->YAB1      <---------ANAC46       <---------ANAC58              --------->GLK1(1)               --------->MYB46(3) --------->ARR14(2)  --------->ARR14(2)     <---------AHL20(2)                       <---------ATHB12   <---------ARR14(2)  <---------ARR14(2)     --------->AHL20(2)                      -------->P    <---------ANAC58 ------>ZmHOX2a(1)     --------->AHL20(1)                      ------>MYB46(1)    <---------CCA1(2) <---------ANAC58 --------->AHL20(2)  <---------YAB1          ------>MYB83  <---------ANAC58 <---------YAB1<---------ANAC58 ------->TOE2(3) <---------ANAC58          --------->DEAR3(1)  <---------SPL7     <---------ANAC46  < ->GT1     <---------TOE2(3)              --------->ATERF1(1) <---------ANAC46    --------->ANAC55(2)   acataaattttttgagatttcttgtgattaaacttgattttggagccaaccatgatagctagcgtcgtatcgtcgatcctgatttcgtatttgcttatca  24579500                         <----------DOF2                        <---------ANAC58                        <---------ANAC58                       <---------AHL20(2)                      <---------ARR11(1)                       <---------ICU4                   <---------ANAC58                        --------->AHL20(2)            --------->ANAC58                        <---------ANAC58            --------->ANAC58                        <---------ANAC46                       ------>ZmHOX2a(2)         ----------->HVH21                          <---------ANAC58       <---------ARR14(2)    ---- <---------At5g28300 <---------MYB52(1)        <-----------RAV1(1)         --------->ARR14(2)    <--- -----------GT1    <---------ANAC58   ----------->GT1      <---------AHL20(2)          <---------YAB1   attcactgcttatgacgcattccgtttctttccctccaaacagtataaactgtggcttgaaataaatatttcatggagaacctctcaacatgatcgcttc  24579600                                                          <<<<<<<<<ARR2                                                          <<<<<<<<<ARR1       <---------TOE1(2)                                                ----------->GT1              ------>ZmHOX2a(1)                                   <---------ANAC58       <<<<<<<<<ARR1  <---------ARR11(1)                            <------ZmHOX2a(2)  --------->LBD16           <---------ARR14(2)                     --------->ZAT2<---------ANAC58       <<<<<<<<<ARR2  --------->ARR14(2)                     <---------ZAT2<---------ANAC46  <-----------GT1    <---------ARR14(1)               --------->ICU4 --------->WOX13(1)--------->LBD16         <---------CCA1(2)     <xxxxxx           <---------ZAT14 --------->ARR11(3) <---------LBD16         <---------ANAC58       -------- ----->HSFB2a(2)     --------->At4g35610      --------->LBD16         <---------ANAC58      --------- ------HSFB2a(2)     <---------At4g35610     <---------LBD16 ------>ZmHOX2a(1)<---------TOE2(2)   gcgaggctgagactgtattgatgagctgagatcaatcgcttgtatacccccggttaaacaatcctatagcaagcgtatcctagattaccgaagtaaaagt  24579700                                                                                     <---------GLK1(1)                                                                              <---------YAB1                                          <---------AHL20(2)                --------->ATHB12                                         <---------AHL20(2)                 --------->ATHB51                                     <---------AHL20(2)                    --------->AHL20(2)     ---                                     --------->AHL20(2)                    <---------AHL20(2)     ---                                     --------->AHL20(1)                    <---------YAB1         <--                                    --------->AHL20(2)              <---------TOE2(3)--------->GLK1(1)                                    <---------AHL20(2)        --------->DAG2<---------ICU4        <--                                 <---------ICU4         ----------->GT1    --------->ICU4        ---- xxxxxxxxxxxxxxxxsmallRNA(s2)    <--------HAHB4    <---------AHL20(2)      --------->AHL20(1) <------ ->DAG2           *TSS          --------->ICU4     --------->AHL20(2) <------ZmHOX2a(1)       ------- ->DOF2>>>>>>>>>TBF1    ------------>CBF --------->AHL20(2)  ---------->DOF2-------->ATHB1   --------   gcaagagaagaagaaatgtctctaatttcaatgcataattaaattaaatagaattaaacagaaaaaagtttaggaaaattattagggaattcatatttaa  24579800                            --------->TOE2(3)                            --------->YAB1                          <---------ARR11(3)                   <---------YAB1      --------->AHL20(2)  --------->ARR11(3)      <---------AHL20(2)<---------AHL20(2)                         <---------ICU4  <---------AHL20(2)   --------->AHL20(2)                          --------->ATHB12  --------->AHL20(2)   <---------AHL20(2)                      --------->AHL20(2) --------->AHL20(2)<---------AHL20(2)                          <---------AHL20(2)        <<<<<<<<<TBF1 ------>AHL20(2)   --------->AHL20(2)                          --------->AHL20(1)   <---------GLK1(1) ------>ATHB51    --------->AHL20(1)              <---------AHL20(2)      --------->ANAC58 -------AHL20(2)  <---------AHL20(1)            --------->CCA1(2)  -------->HAHB4   --------->GLK1(1) -------ICU4      --------->AHL20(2)           --------->ARR11(3) --------->ICU4   --------->ARR11(3) ----->ICU4      --------->YAB1                <---------ARR11(3) <---------ATHB51 <---------ARR11(3) ---AHL20(2)  <---------AHL20(2)           ---------->DOF2    --------->AHL20(2) <---------YAB1 -->AHL20(2) <---------AHL20(2)    <---------ANAC58           <---------AHL20(2) <---------TOE2(3) ->AHL20(2)  --------->AHL20(2)    <---------ANAC58     ----------->GT1   --------->ANAC58   ttatttaattaaaaattaaatataattaaatcttaatgcttcccataaagatttaaacttgtaaattaattatgggaagcattaagatttcttcttcgat  24579900                                                                      <-----------GT1                                                                     <---------ICU4                                          <-----------GT1           --------->ICU4                                         --------->AHL20(2)  --------------------->WRI1                                      -------->HAHB4        --------->TOE1(2)                                      <--------ATHB1        <---------MYB59                                      --------->YAB1        --------->TOE2(3)                                      <--------HAHB4        --------->TOE2(2)                    ----                                      --------->ATHB51     --------->ANAC55(2)                   ----                                      <---------ICU4 <---------AHL20(2)                       -------                                     --------->AHL20(2)  <-----------GT1                      -------                                     <---------ATHB51--------->AHL20(2)              <---------ARR11(3)                            --------->ANAC58         <---------AHL20(1)            --------->ANAC58                  <-----------GT1    <---------YAB1  --------->AHL20(1)            --------->ANAC46                 --------->YAB1      --------->ICU4  <---------ARR11(3)    <----------DOF2    -------         <---------CCA1(2)  --------->ANAC58         --------->ARR11(3)    <---------DAG2 <----------       --------->YAB1 ------>ZmHOX2a(1)  <---------AHL20(2)<---------ANAC55(2)     --------->ANAC58 -   ttgaattactcatatctaattatcctgctctcgcacttaataattaactatgaaatatattacctaagaaattatcgcttttttcaagaaattcacaagc  24580000                                                                                      <---------ALFIN1                                                                                    <------ZmHOX2a(2)                                                                                   --------->ARR11(3)                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   --------->AGP1 ----->TOE2(3)                                             ================================HOX2a_HOX2a ----->TOE1(3)                                             <------ZmHOX2a(1)       <---------ARR11(3) -->ANAC58                                         --------->WRKY38(1)          <---------WOX13(1)  < -->ANAC46                                       <-------GAMYB           <---------ARR11(3)       --- -->ANAC58                                      <---------MYB46(3)       --------->ARR11(3)      ---- -GT1  <---------YAB1                --------->TOE2(3)   <---------TOE2(3)   <---------YAB1     ----- -------->AHL20(2)      ---------->DOF2         --------->MYB52(2)      <---------CCA1(2)      <-----   cttaaaattctaattctatcaattcacaaagcacaataacatcaaattgtttgttgactaaggaaactttgcccatatattgatagatccacctattcaa  24580100                                                                                    --------->ATHB51                                                                                    <--------HAHB4                                                                                    --------->ATHB12                                                                                    -------->ATHB1   <---------DAG2                                                                  <---------YAB1   <----------DOF2                                                          --------->CCA1(2) ---------ALFIN1                                                       ---------->DOF2 ---->GAMYB                                                           --------->YAB1<---------ICU4 ----->ANAC46            --------->ZAT14             ---------->DOF2 <---------ATHB12  --------->YAB1 --->P         <---------YAB1                      <---------MYB52(2)<<<<<<<<<ARR2 --------->ICU4 ------GT1  ------->TEIL <---------ZAT14  <---------MYB59          --------->WOX13(1) <---------YAB1   ccccacttttgatgaatttgattacagagtagtagtcaaattggcctaattcaactaaagcatgaagaacaatcaaagatagagaattattagaacaatc  24580200  Previous    Next  AGI:  At1g66010.1    Description:  pseudogene, hypothetical protein Range:  from: 24579361    to: 24579718    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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