Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ---------->DOF2                         --------->AtMYB61                       ------>NtERF2                   --------->ANAC58                                                         <--------                   --------->ANAC46                                  <---------ARR14(2)    <------MYB46(1)                   --------->ANAC58                                  --------->ARR14(2)    <------MYB83            --------->ANAC58                                        <---------GLK1(1)   <---------ANAC58            ----------->GT1           <---------ANAC58            <------ZmHOX2a(1)     <---------ANAC58            --------->ANAC55(2)       <---------ANAC55(2)        --------->ANAC58    <--------P            --------->ANAC58          --------->ANAC55(2)        --------->ANAC58   <-------GAMYB            <---------ANAC55(2)       <---------ANAC58    <-----------RAV1(1) <---------ANAC46       <---------YAB1 --------->RAP2.6(2)                <---------TOE2(3)    <---------ANAC58    <-- --------ANAC46<-----------GT1  <---------YAB1          --------->YAB1        <---------ANAC58  <----   ttcgtgtttctgataagtaacaagccaccaaagtctgattacttatctttctaatctataatgttgcaggaaatacggtttcttggggttgctaggtctg  24490300                     <-----------HVH21                  <------MYB83                  <------MYB46(1)                                <---------GLK1(2)                  <---------ANAC58                              -------->HAHB4                 --------->MYB52(2)                             <--------ATHB1                 --------->MYB46(2)                             <---------ICU4                 --------->MYB55(2)                            --------->ICU4                 <---------MYB46(3)                            <---------ATHB12                 <---------AtMYB61   <---------ANAC58          <---------YAB1     <-----------GT1--------->bZIP60(1)   <---------At4g35610 <---------TOE2(3)  --------------->AtSPL8         <---------ANAC58         <-------GAMYB  --------------->AtSPL3        ------>ZmHOX2a(2)  <---------ARR14(2)                               < -AGP1------->TEIL<---------ANAC58   <---------ANAC46  --------->LBD16                        ------- -------YAB1    <---------MYB55(1)   <---------ANAC58<---------LBD16           --------->HSFB2a(2)  < -----At4g35610<---------MYB52(1)<---------ANAC58  --------->ARR14(2)          <---------HSFB2a(2)  <   atgatatgtaccatctcgtttggtgtcactctgatccttgcttgagctactcgtttctggggttaatgattctctggtttgctcgaagaatatagaacca  24490400               --------->ANAC46            <---------ZAT18       <---------At4g35610       --------->At4g35610                                               <---------ANAC58       <---------ZAT2                                               --------->YAB1       --------->ZAT2                                              <---------ATHB12 ---------ANAC58                                                <---------AHL20(2) -->MYB46(3)<---------ETT(2)                   <----------DOF2  --------->AHL20(2)   --------->At4g35610 ---------ANAC58                           ---------->ID1 ----------->GT1<---------ANAC58      <----- ---------ANAC46                <----------DOF2--------------->AGL15<---------ICU4  ----------->GT1   atgcttgtaagctgtccacaaaacttgtgtaatactttagagtttgtcacttttaaaagtttgtaataaatcatggcttcatagaacagttgaaatttca  24490500                          --------->YAB1                   --------->CCA1(2)                                            --------->ZAT14                  <---------ARR11(3)                                            <---------ZAT14              --------->YAB1<---------YAB1                                 --------->ZAT14        --------->TOE2(3) <---------ICU4         <---------AHL20(2)        <---------ZAT14       ----------->GT1   --------->ICU4   ----------->GT1            --------->ARR11(3)            --  --------->LBD16 --------->ARR11(1) <----------DOF2 <---------ICU4  <---------ARR11(3)            -- ------GT1    ---------->DOF2        <---------DAG2 <---------YAB1  <---------CCA1(2)              --   catccgtagacgttaataaagatttgaattatgaagacactttctggttattttataattccatctatctatatctctgtactgaagtgatcaaaacact  24490600                                                                               ------>NtERF2                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              --------->LBD16                                                                            <---------LBD16                                                                            --------->LBD16                                                                           <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        --------->TOE2(2)                                                                       <---------HSFB2a(1)                                                                       ----------->RAV1(2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       --------->HSFB2a(1)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                <---------ARR14(2)                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                --------->ARR14(2)                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ARR11(3)                                     <------ZmHOX2a(1)        <---------ARR11(3)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------MYB52(1)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->DOF5.7(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxx    --------->ANAC58                                     <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxx    --------->bZIP60(2)                                  --------->ANAC58  <---------ANAC46    --------->ANAC55(2)                                  --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ANAC58                                     --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------ANAC55(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxx    --------->ANAC55(1)       ------------------------>ANAC81<xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ANAC46   --------------->AGL15         --------->DOF5.7(2)--------->TOE1(2)    -------- ------->ANAC46<---------ANAC58          --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s) <---------ALFIN1 ------->ANAC58<---------ANAC46     --------->AHL20(2) <---------DOF5.7(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->ANAC58<---------ANAC58----------->GT1     <---------ANAC55(2)------->TEIL---------->DOF2   tacgacacgttatcttggcttgttactcaaaaaatgaaaaaaataaactaaaaacgtgaacggcaggattcgaacctgcgcgggcaaagcccacatgatt  24490700                              <---------ALFIN1                             --------->ZAT18                           ------->PIF5                           <-------PIF5                          --------->ANAC58                          --------->ANAC58                          --------->TGA1a                          <---------TGA1a                       <---------MYB52(1)                      <-----------HVH21                      ------>NtERF2                      --------->LBD16                     <xxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->ANAC46                     <xxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                    <---------LBD16                   <xxxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                xxxxxxxxxxxxxxxx>smallRNA(i)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->MYB46(3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      ----------->TBP              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    --------->AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->YAB1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------YAB1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ICU4             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------YAB1            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                --------->AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------AHL20(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->AHL20(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------AHL20(2)                 <            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->AHL20(2)    --------->ANAC55(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->AHL20(2)       --------->ANAC55(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)             <---------ARR11(3)         <---------ANAC55(2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->AHL20(2)--------->YAB1      --------->ANAC58 xxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ARR11(3)         --------->ANAC46 xxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) ------->TEIL <---------TOE2(3)          <---------ALFIN1 xxxsmallRNA(i2)<---------ALFIN1    *TSS  <---------REM1(1)--------->YAB1    ---------->DOF2<-------- ->ATHB12--------->LBD16<---------ALFIN1  ----------->GT1 <---------YAB1<---------YAB1 --------->ANAC58   tctagtcatgcccgataaccactccggcacgtccactgtttgagatgtaacttaaatattaagataatataattataaataaagacaacacgttacgata  24490800                                                                             ----------->HVH21                                                                    --------->ANAC58                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                 ----------->HVH21                                                                 --------->WRKY38(1)                                                                 --------->WRKY12              --------->MYB52(1)                                --------->DOF5.7(2)            <------------MYB.PH3(2)                             <---------MYB52(1)       ----------->RAV1(1)            <<<<<<<<<<AtMYB44       --------->DAG2             <-------GAMYB ----------->TGA1            <---------MYB52(2)     ---------->DOF2             <---------At4g35610      <----------ID1            <---------MYB59  <---------ICU4                   <---------ANAC58         --------->MYB46(3)            <---------MYB111(1) --------->YAB1                <---------ANAC58         --------->DEAR3(2)            <---------MYB46(2) <---------YAB1                 <---------ANAC46  <---------ANAC46          <-----------GT1    --------->YAB1               <---------GLK1(1)--------->ANAC55(2) ---------ANAC46            --------->ICU4               <---------ZAT6    <---------ANAC55(2) -YAB1 ----------->GT1--------->At4g35610         <---------ANAC46<---------DOF5.7(2)<---------ARR14(2)   ctacgtggatagtaactaactatttgctgaattatgataaagtcgtttcattgtttgtagagttccgttgacgcaaaacgtgacgagaaaccgacaaaat  24490900                ------->MYC3                <-------MYC4                <-------MYC3                ------->MYC4                <-------MYC2                ------->MYC2                ------->PIF5                <-------PIF5               ==========================================bZIP_DOF               --------->PIF3(3)               <---------ANAC46               <---------PIF3(3)               <---------O2                ----------->GT1                   ---------->DOF2               --------->TGA1a    <------NtERF2                         <----------ID1               <---------TGA1a   --------->LBD16                      ---------->DOF2         -------               --------->O2     --------->RAP2.6(2)             --------->ZAT6      --------->ANAC58      ------>MYB46(1)          <---------LBD16---------->DOF2  <---------ZAT14      --------->ANAC58      ------>MYB83     --------->YAB1 --------->YAB1           --------->ZAT18    --------->CCA1(2)   gagacacctacataaccacgtggaatgatatatgccggaactataatgtaaagttcgaaatggagaacactaaaaagacaaaagataagctataaacctc  24491000   <------MYB83   <------MYB46(1)   <---------ANAC55(2)                                                          ----------->GT1  --------->MYB59                                                           ---------->DOF2  <---------TOE2(3)    ----------->RAV1(1)                             <-----------GT1       -------- -->TOE2(3)          <---------ZAT18 <-------TEIL<---------ATHB12     --------->AHL20(2)    ---------   taattaggtataagttaacacagtgcaacaacgtgaacatccatttggccaatcgacatattatgctctaaatttactaaaagagtgaattactcggtaa  24491100                                       <---------AHL20(2)                                           <                              ----------->GT1                                                <-------                            <--------P --------->AHL20(2)                                    <-------         <---------YAB1    <-------GAMYB                                                     --------      <---------YAB1      <------MYB83--------->AHL20(2)         <----------DOF2            <--------    <---------ICU4        <------MYB46(1)                   <---------MYB59    <---------ANAC58    --   --------->ICU4         <---------MYB46(3)               --------->ANAC55(2) <---------ANAC46 ----- ->At5g28300      --------->ATHB12 --------->ICU4   <-----------GT1 --------->AHL20(2)     <--------- -->GT1--------->YAB1 --------->MYB52(2)       ------->TEIL<---------ANAC55(2) <---------ANAC58<-----   ctatacttattatgagaaattgattagttggttagtaaaaattaatatgaacatttacattacataacttttatatagattgagtgttttttttatcatt  24491200  Previous    Next  AGI:  At1g65820.1    Description:  microsomal glutathione s-transferase, putative. similar to Os03g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051042.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22230.1); contains InterPro domain Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) (InterPro:IPR001129) Range:  from: 24488764    to: 24490555    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g65830.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 24490655    to: 24490736    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version