Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ------>ZmHOX2a(2)                                                                                            =========                                                                                           <------ZmHOX2a(2)                                                                                           ==========                                                                                          <---------ARR14(2)             <---------YAB1          <-----------------AGL1                               --------->ARR14(2)             <------ZmHOX2a(2)<---------ARR14(2)                                   --------->YAB1            --------->ARR11(3)--------->ARR14(2)                                  <---------YAB1            <---------ARR11(3)--------->ARR11(3)                 --------->At4g35610      <---------ARR11(3)         --------->YAB1       <---------GLK1(2)                  <---------At4g35610  --------->YAB1-    <---------ZAT14     ----------->HVH21          <---------ARR14(2)      <-----------GT1--------->ARR11(3)    --------->ZAT14  --------->TOE2(3)    <----------DOF2    <-----------HVH21--------->TOE2(3)   <-- ---------HVH21--------->TOE2(3)   <-----------GT1 --------->ARR14(2) ---------->DOF2 ---------->DOF2   ggtcactgcaataagatcattaacctctaacagattttgacctcctttggtcatatactcatttgtcatctgcaaagtaacctcataataaagatcccta  24484000                                                   --------->ANAC58                                                   --------->ANAC58                                                   --------->ANAC46                       --------->ATHB12          <---------AtLEC2        --------->ARR11(3)                      <---------ZAT14        <-----------ARR10<---------GLK1(1)      <---------ZAT18        <---------ARR11(3)                      --------->ZAT18 ----------->GT1    <---------ANAC46            --------->ZAT14                         <-------MYC2 ====HOX2a_HOX2a    <---------ANAC58       <---------ANAC58<---------ANAC58             ------->MYC2 ====HOX2a_HOX2a    <---------ANAC58       <---------ANAC58<---------ANAC58             <-------MYC3 ---------->GT1 <---------LBD16        ---------->DOF2   ------->TEIL                   ------->MYC3 ----ZmHOX2a(1)----------->RAV1(2) --------->TOE2(3)  <---------ANAC55(2)         --------->YAB1    <   ggaggtttaaaatctttccctggcttgatttcccaaaacttaaaagcttgtgcacgacgtatcgttcccatacttgacaacaaatcagcatgtgtctctt  24484100                                                                     ------>MYB83                                                                     ------>MYB46(1)                                                                   <---------MYB46(2)                                                                   <---------MYB59                                                                 ------>MYB46(1)                                                                 ------>MYB83                                                                 -------->P                                                          --------->KAN4(2)                                                         <---------HSFB2a(1)                                                         --------->HSFB2a(1)                                                         <---------HSFC1(2)                                                         --------->HSFC1(2)                                                        <-----------ARR10                                    <---------WOX13(1)  --------->ARR14(2)                          <                                    <--------P          <---------KAN4(2)                      ------     ----------->GT1               <-------GAMYB        --------->GLK1(2)                      ------ --------->YAB1                <----------DOF2         <---------GLK1(2)                      ------- --------->ATHB51        --------->ARR14(2)           <------ZmHOX2a(1)                      -------- ---------ATHB12<---------ATHB12  <---------MYB46(3)--------->MYB59<---------MYB111(1)    --------->TOE2(3)   caataatcggtttaacaaatgactcaaaatactctttggttgatgtgaatgtgttaggaatcttccctacctaataaccaaaaacacaaaatccataaag  24484200                                                             <-----------HVH21                                                          ----------->RAV1(2) ---------MYB52(2)                           <---------At4g35610 --->ANAC58                      <----------ID1      <---------ANAC55(2)                --------->bZIP60(2) --->ANAC58                    ---------->DOF2       --------->ANAC55(2)                --------->ANAC46 -->DAG2                   <---------TOE2(3) --------->At4g35610           --------->CCA1(2) -->DOF2   ---------->DOF2---------->DOF2  <-----------RAV1(2)   ------>ZmHOX2a(1)  <-----------GT1   caactaagaaaaaaaaagagaattgttttaaagtaaagacaagagtcagaagaatacataacctgtcctctgtatagatttgagtttaacacatcacgaa  24484300                                               ---------->ID1                                              <-----------GT1                                       <---------YAB1                                    --------->TOE2(3)                                     --------->YAB1                          <---------ICU4    <-----                                  <----------DOF2               <----------DOF2  --------->ZAT18   gagaccaagagaagacaacatcgactaaatctcttcctttgatgattttttccttcttcttggtttcttttgctacccataagtgctccatcgttatata  24484400                   --------->ARR11(3)             <---------DAG2                            >>>>>>>>>MYB2                   <---------ARR11(3)             <----------DOF2                       <------ZmHOX2a(1)           <---------ARR14(2)                <---------MYB59                         <------ZmHOX2a(1)      --------->AtLEC2                   <-------MYC3                        <---------ANAC58 ------GT1<---------CCA1(2)              ------->MYC3       --------->YAB1   <---------ANAC58   ctctgtttatgcaaatctcaagacctctcaacgtttttgttcacatgcctaactttttagaatgagaagatgaagaaatacttgtgaggaggaaaaccaa  24484500                                                         ---------->DOF2                        -----                                                      <---------TOE1(2)                         <----                                                      <---------TOE2(2)                         <----                         ---------->DOF2             ------>ZmHOX2a(1)                          -----             --------->ALFIN1                        --------->HSFB2a(2)                   <---------HSFB2a(2)             <---------ZAT6                <----------DOF2     ------------>CBF   <----------DOF2           <---------ANAC46              ---------->ID1 <------ZmHOX2a(1)         --------->TOE2(3)           <---------ANAC58          <----------DOF2 <---------HSFB2a(2)   ------------>CBF--------->HSFB2a(2)           <---------ANAC58       ---------->ID1  ------>ZmHOX2a(1)    --------->ZAT14  <----------DOF2   aggtttggacttggagtgttgaagtctaaaagacttgttctttttctttttcctcctaggaaagggccaatactaaactcaatactttaacttttagaaa  24484600                                                   <---------TOE2(3)                                                 <---------AHL20(2)                                            ------------>CBF                                   ------                          --------->ZAT6   --------->YAB1                                      <-----                         <---------YAB1    --------->TOE2(3)                               --------->ARR11(3)                       <---------ICU4 ------------>CBF                                     <---------ARR11(3)             <----------DOF2         --------->ANAC55(2)                             --------->YAB1 ---->HSFC1(2)       <---------YAB1  <---------ANAC55(2)                  --------->GLK1(2)<--------- -----HSFC1(2)     --------->AHL20(2)--------->ANAC46                 --------->YAB1 --------->TOE2(3) -----HSFB2a(1)   <---------YAB1     --------->ANAC58                <---------YAB1 <---------YAB1 ---->HSFB2a(1)<---------YAB1        --------->ANAC58    <---------AHL20(2)         ----------->GT1   tttcgaaacatacaactttgattatttatgactaggtttacgcaatctcaatttatgttttaattttgtttttgataatctcgattatgttaatatcctt  24484700                                          ------>ZmHOX2a(1)                                          <----------DOF2                                      --------->ARR11(3)                                      <---------ARR11(3)                                     <---------GLK1(1)                                     --------->GLK1(1)                      ------->GAMYB                                    <---------ARR14(2)                     --------->MYB46(3)                                    <---------ARR11(3)                    -------->P                                    --------->ARR11(3)           <---------AHL20(2)                                    --------->ARR14(2)           --------->AHL20(2)                                  ----------->ARR10    <----------DOF2   ------->GAMYB <----------DOF2               <---------ANAC46     <-----------GT1     <---------MYB111(2)        <- >ZmHOX2a(1)               --------------->AGL15<---------ARR11(3)      --------->MYB46(3) <--------- -----DOF2                 <---------ANAC58     --------->ARR11(3)    <-----------GT1   <---------ICU4 --GT1                     <---------ANAC58   <---------TOE2(3)--------->AHL20(2)   <-------TEIL  <--   tttcttttgggaacgatatatgttattttccttgagtagatatcctttgagatttttctttctaaatttatataacaacctccaaattcatgtttactag  24484800                                            --------->ANAC55(2)                                            --------->ANAC58                                         --------->TOE1(2)                                      --------->GLK1(2)                                            <-                           <---------AHL20(1)                                                     <--                           <---------AHL20(2)                                                     ---                           --------->AHL20(2)                                                     <--                           --------->AHL20(1)      <-----------GT1                                ---                          --------->AHL20(2)--------->ANAC46           <---------At4g35610    <------                          <---------ATHB12  --------->ANAC58           --------->At4g35610    -------                      <---------ATHB12--------->ARR11(3)             <-----------RAV1(2)    <-------- ---------DOF2      --------->WOX13(1)<---------ARR11(3)           <-----------HVH21        --------- --GT1          <---------ZAT6        <-----------ARR10          <-------TEIL     --------->ARR11(3) -------DAG2    ----------->GT1----------->GT1<XXXXXXXXXXXXXXXXXXXXMIR4243        <---------ARR11(3)   cctttttctatatacctagagtaaatcaataaattgagaaaatcttacgaaattttcggttttaaaattcgtcagatgtgataacatcttacaactttaa  24484900  Previous    Next  AGI:  At1g65810.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT1G65780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69345.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15434.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69346.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) Range:  from: 24480706    to: 24484391    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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