Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <------NtERF2                         <---------RAP2.6(3)                         ------>NtERF2                        --------->DEAR3(1)                        --------->ANAC46                        <---------ATERF1(2)                        --------->ATERF1(2)                        --------->RAP2.6(2)              ---------->DOF2                       --------->RAP2.3(1)    --------->AHL20(2)                       --------->ATERF1(1)    --------->ATHB12                       <---------RAP2.6(2)    --------->ATHB51                      <---------ATERF1(1)     <---------AHL20(2) -----ETT(2)      <---------MYB46(3)         --------->ICU4 ----------->GT1 -ZmHOX2a(2)    <---------MYB52(1)           <---------AHL20(2)       <---------ICU4 -YAB1       --------->ZAT18    <-----------GT1        ----------->HVH21         <------ZmHOX2a(1)   gacgagagtctcaagtccagtagttgccgccatgttacagttcggaaattatttgaactgaaaggttactaaaaattagactaggaatttcatcgaacac  24439600         <---------ANAC46         <---------ANAC55(2)        <---------LBD16                 <---------ARR14(2)       --------->MYB52(1)               --------->ARR14(2)      <---------SPL7                   <---------CCA1(2)                  --------->TOE2(3)     <---------ANAC58                <---------ANAC46                    --------->YAB1     <---------ANAC58                <---------ANAC58               --------->TOE2(3)    --------->At4g35610              <---------ANAC55(2)          ------>MYB83    <---------At4g35610              --------->ANAC55(2)          ------>MYB46(1)  <---------ZAT18          --------->AHL20(2)                   <---------MYB111(2) <---------ANAC46          <---------AHL20(2)                   <---------MYB46(2)       <---------ANAC55(2) <---------ANAC58         --------->AHL20(2)                   --------->ANAC46     <---------ICU4 <---------ANAC58   --------->YAB1   <---------ANAC58        <-----------GT1      --------->LBD16   <   ttggtgtgcttacggataacaatgaaaaattaatagatttcgtatccatctcaacgagagatttcaccaaacttaacataaatccagaattacgagaaac  24439700                                       --------->AtMYB61                                      --------->MYB46(3)                        --------->LBD16     <           <XXXXXXXXXXXXXXXXXXXXMIR843<---------MYB55(2)                      <---------LBD16  <-----       >>>>>>>>>>>>>>>>>LFY    ---------->DOF2                      <---------ARR14(2)         ------    <---------ICU4           <---------AHL20(2)                     --------->GLK1(2)      --------->ANAC58   <---------YAB1            --------->AHL20(2)          ----------->GT1  <-----------HVH21--------->ANAC46 --------->YAB1        --------->TOE2(3)--------->MYB52(1)         <---------GLK1(2)----------->GT1 - ---------ATHB12       <---------MYB59<---------ABI4(2) ------->TEIL--------->ARR14(2)     --------->ANAC58   aaatgataattccagtgtaatttgacctaaattaaaagaaaccaccgaatagaaaacgaatgtaaaacaggttctggttcaccggagggtttcaaggaat  24439800                                                                            <---------YAB1                                                                         --------->GLK1(2)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                       --------->GLK1(1)                                                                       --------->HSFB2a(1)                                                              <---------ANAC58   <------MYB83                                               --------->GLK1(2)      ----------->ARR10           --------->TOE1(2)                   --------->ARR14(2)    <------NtERF2           --------->TOE2(2)                   <---------ARR14(2)   --------->LBD16         ---------         <-----------------------TaNAC69(2)   <---------GLK1(2)   <---------LBD16----------->GT1    >>>>>>>>>TBF1                         <---------LBD16     <---------ANAC58   <------MYB46(1) ---------At4g35610              <----------DOF2--------->At4g35610<---------ANAC46 ---------->DOF2 ----GLK1(1)                    --------->TOE2(3)            --------->MYB52(2)<---------WOX13(1) --->GLK1(1)          --------->DAG2   <---------At4g35610 <---------MYB52(1)--------->ATHB12     <-- -------->At4g35610  ---------->DOF2<---------At4g35610  ----------->GT1<---------GLK1(2)   ---------   tcagaagaagaaacgtatgagggaaaagctctaacctttgctgcttcggaatctgaaaatcgttacttggcggagattctgattggtaaagaaaccctaa  24439900                                      --------->ALFIN1                                    --------->TGA1a                                    <---------ANAC58                                    <---------ANAC46                                    <---------ANAC58                                    ========================bZIP_DOF   --------->ANAC46                                    ========================bZIP_DOF   --------->ANAC58                                    <---------TGA1a           <----------DOF2       <-----------TGA1             <---------O2             <---------ANAC58  <----------DOF2                 --------->LBD16 *TSS       <---------ANAC58  ============================================bZIP_DOF       <---------ANAC46--------->TOE2(3) <---------DAG2                   ------>NtERF2 <---------ANAC58       --------->ANAC58            -- >TOE1(3)                        --------->ANAC46<----------DOF2      <---------------------WRI1   -- ---------GT1                    <---------DEAR3(1)     <-----------RAV1(1) ----------->GT1        -- >TOE2(3)   <-----------RAV1(1) <---------LBD16 <---------ANAC58  <-----------GT1---------->DOF2 <---   aaaccttttcgtcactgttgttcttagaaaactctccggcgtgtgtttttgcttttggatgttgcttttaactacgaaatgttaaaagaaatactcaaac  24440000                                                                        ----------->GT1                                                                     ------>MYB83                                                                     --------->MYB52(1)          <---------AHL20(2)                                         ------>MYB46(1)    ------>MYB46(1)                                                <---------MYB59    ------>MYB83                         ------------>CBF         --------->DEAR3(2)  <---------MYB59                     --------->DEAR3(2)         ------->TEIL --------->DEAR3(2)                   --------->MYB46(3)      ----------->HVH21 ---->MYB83     --------->LBD16     <---------ARR14(2)      <---------At4g35610 ------->MYB52(1)    ----------->GT1--------->ARR14(2)      ----------->RAV1(2) ---->MYB46(1)<---------LBD16    --------->ANAC46           --------->At4g35610                    <- ------MYB59<-----------GT1 <---------AHL20(2)            <-----------GT1                   <--------   cgaaccgaacattttatccggtttagttattttatccgaaaccgacaattctgaaaattttcacctgaaccgaactgtttaatccaccaagtatgcatgg  24440100                          <---------RVE1(1)                         <---------ARR11(3)                         --------->ARR11(3)              --------->ARR14(2)                                             <---------YAB1           ------>ZmHOX2a(2)                                               --------->YAB1 <----------DOF2          <------ZmHOX2a(2)                                               <---------YAB1<------MYB46(1)         --------->ARR14(2)                                  <---------AHL20(2)         <------MYB83     <-------TEIL        <---------GLK1(2)                  --------->ARR11(3)         --------->MYB59 --------LBD16<---------ARR14(2)                            <---------ARR11(3)     <------MYB46(1) -AtLEC2 <---------ARR14(2)         <-------TEIL            <---------AHL20(1)     <------MYB83   ttcggggttcagatcggattcagtttagattttttggattcatccgatacaaaaatttagtatatatttgggttctatgattatttggttcggtttttgg  24440200                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               <-----                            --------->AHL20(2)                                              <--------                            --------->YAB1                  ---------->ID1              <---------HSFB2a(1)                         --------->YAB1             --------->AHL20(2)              <---------TOE2(3)                        <---------YAB1              <---------AHL20(2)         --------->ZAT6  ------                       --------->AHL20(2)        --------->AHL20(1)          --------->YAB1<---------LBD16                       <---------AHL20(2)        <---------AHL20(1)    <---------TOE2(3)<---------HSFC1(2)              <-----------GT1                   --------->AHL20(2)     --------->MYB59  --------->HSFB2a(1)            <---------AHL20(2)                --------->AHL20(2)       <---------TOE1(3)--------->HSFC1(2)   aaaaaactacatattttttcaaaattttaataaaaattgaattacaaaaaatatataattttgtcatttagtttaggtataatactaagaattttcggat  24440300                                                                     <---------AHL20(2)                                                                     --------->AHL20(2)                         <---------CCA1(1)                      <---------AHL20(2)                         <---------RVE1(1)                      <---------AHL20(1)                        <---------ARR11(3)                      --------->AHL20(1)                        --------->ARR11(3)                      --------->AHL20(2)                        <---------AHL20(1)                     <---------ICU4           <---------YAB1                      <---------TOE2(3)                        --------->YAB1        --------->ICU4                 <---------ARR11(3)                           --------->ICU4       <---------ICU4                <---------CCA1(2)                           --------->YAB1         <--------ATHB1           <---------AHL20(2)                              <---------YAB1          --------->AHL20(2) -----CCA1(1)  --------->AHL20(1)                          --------->ICU4          <---------AHL20(2) -----RVE1(1)  <---------AHL20(2)                      ----------->GT1             <---------AHL20(1) ---->GLK1(1)  <---------AHL20(1)              <---------WOX13(1)<---------YAB1    --------->YAB1 ----ARR14(2)  <---------ARR11(3)            --------->ATHB12 <---------YAB1      --------->ICU4   <- -ANAC46  --------->AHL20(2)       <---------CCA1(1)  <---------TOE1(3)           <---------ATHB51 <- --->ARR14(2)  --------->ARR11(3)  <---------RVE1(1)  <---------TOE2(3)           <---------ATHB12 --   attttggatatatataatatatctaagatatttttggatatttttgttaattggttaaggtataattataatttaaaacatctaataattttgaatatgt  24440400                              <------MYB46(1)                     <---------ANAC46                              <------MYB83                        <---------ANAC58           --------                           <---------MYB52(1)             ----------->GT1       <---------AHL20(2)                      <-----------GT1                  <---------MYB52(1)   --------->AHL20(2)                    --------->CCA1(2)                 <-------GAMYB ----------->GT1        <---------LBD16 --------ARR11(3)  --------->ARR11(3)               <-----------RAV1(2)     <---------AHL20(2) --------ARR14(2)  <---------ARR14(2)              <-------TEIL   <---------ANAC58---------->DOF2   < ------->ARR11(3)  --------->ARR14(2)  <-----------GT1<---------At4g35610  <---------AHL20(2)--------   agatattgtttcgatttttcagatatactgtttggtttttgtttctgttcgggttcagttgggataattcgtgtaaaattatttaaaagtctctccggtt  24440500  Previous    Next  AGI:  At1g65700.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G19120.1); similar to unknown [Populus trichocarpa] (GB:ABK94082.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 24437899    to: 24439950    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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