Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------YAB1            =============================================bZIP_DOF            --------->bZIP60(1)            --------->ANAC46            <---------bZIP60(1)            --------->TGA1a    <---------RVE1(1)    --------->GLK1(1)   <---------ARR14(2)   --------->ARR11(3)   --------->ARR14(2)                         <----------DOF2   <---------GLK1(2)                    <-----------GT1                             ---------->DOF2   <---------ARR11(3)       <------ZmHOX2a(1) <---------DAG2             ------->TEIL   cttcagatattctcacatcactattcactaggagcataaatttcacaacttttcatcaaacaaacaaaaaacatggacttaacatctaaagcatcgagtt  24421000                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                               <-----                                                                                             ------->TEIL                                 --------->WOX13(1)                                        <---------SPL7                               <---------ATHB12                                          ------>MYB46(1)                    --------->ZAT14  ---------->DOF2                                     ------>MYB83         <-----------GT1     --------->GLK1(1)     <---------ALFIN1      --------->ZAT6 --------->MYB52(1)    <---------YAB1  <---------ZAT14 --------->AHL20(2)               --------->AHL20(2)--------->AtMYB61   taagttctaataaaccattcaatgcagtgagaaatcaattaaagcacaaacccaaaccccattaagagacattaaacactaagaagagaccaacgtacca  24421100                                                                       --------->LBD16                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                      --------->ANAC46              <---------ZAT14                                         --------->DEAR3(1)              --------->ZAT14                                    --------->ANAC46              <---------ZAT18                                    --------->ANAC58              --------->ZAT18      --------->MYB52(1)            --------->ANAC58 ------>ZmHOX2a(2)                 -------->P             ----------->GT1 ------ZmHOX2a(2)        ----------->TGA1                 --------->ANAC58 --------ARR14(2)        ----------->HVH21                <---------ANAC55(2)        ---------->DOF2 ------->ARR14(2)   --------->ANAC58                      --------->ANAC46         --------->AtMYB61- --------ARR11(3)   --------->ANAC46 --------->TOE2(3)    --------->ANAC55(2)     --------->ANAC46 -- ----ZmHOX2a(1)     --------->ANAC58----------->RAV1(2)   --------->ANAC58      --------->ANAC46   -- ----LBD16<---------ATHB12      --------->HSFC1(2)     <------ZmHOX2a(2) ----------->RAV1(1)     ----   ggatccgactcaatcgtgcaccaagacatgacgaaactacctgaaaatcacgaagggatcacgttataagcaccgcaacaatacaccaaaagagtagaag  24421200                                                            <---------GLK1(2)                                                    --------->ANAC58                                                    --------->ANAC58                                                  ---------->DOF2  <---------ANAC46                             <---------At4g35610 -------->MYB52(1)                             --------->At4g35610       --------->HSFC1(2) --------->TGA1                               --------->MYB59      <----------DOF2 --------->HVH21                           --------->STY1(2)--------->ARR14(2)                   ---- ------->RAV1(2)<------NtERF2         <-----------GT1  ---------->DOF2   <---------HSFC1(2)    ------   cctgacggaaattgtggaggcgaaagatgaaaacgatgaattactagttagctaaagcaaaggaatcgcctttgaagcttcttcgaaccgaatgagatag  24421300                                                                        *TSS                     --------------->AGL15                            <---------YAB1                    ----------------->AGL1                        <---------AHL20(2)             <---------ANAC58                                   <---------AHL20(2)             <---------ANAC58                                <---------AHL20(2)                  ----             <---------ANAC46                                <---------AHL20(1)                <-----          <----------DOF2                                    --------->AHL20(1)                <-----         <---------ANAC58                <-----------GT1    --------->AHL20(2)                 <-----         <---------ANAC58          <---------TOE1(3) <---------ZAT2 <---------AHL20(2)        ------- ----->ARR11(1)     <-----------------AGL1  <----------DOF2 --------->YAB1     --------->AHL20(2)<--- ----->ARR10 --------->ANAC55(2)   <---------TOE2(3) --------->ZAT2<---------YAB1         <----------DOF2   atttggagattgctttcgtgactccaatttgggaattagggtttaactttgccagagctcgattatatttttatttttgttttaaatagtcgctttgtcg  24421400                                  <---------ANAC58         --------->LBD16          <---------ANAC58   <---------DAG2                 <---------MYB46(3)   <----------DOF2                --------->MYB52(2)  <---------ANAC58               <-------TEIL  <---------ANAC58            <---------DEAR3(2) ----->ALFIN1                <---------TOE1(2) ----ANAC58               <---------ANAC58 ----ANAC46               <---------ANAC58                 <---------MYB52(1) ----ANAC58               --------->MYB52(2)              --------->TOE2(3)                     ----- --->ID1 ------>ZmHOX2a(1)<---------ANAC46      <---------YAB1                      --------->TOE1(2) --------RAV1(1)         <-------TEIL       --------->TOE2(3)                       --------->TOE2(2)   tgttgcttttcctggtttagtctctggttcgtgggttcgttcgtaatcttatcgttggacccttaattcatatatgtgaaaaaaaacatacgataacaaa  24421500                               <---------WOX13(1)                             --------->ATHB12                             --------->MYB52(2)                          <-------GAMYB                         ----------->GT1                                               <---------MYB46(3)                         <---------MYB46(3)                                         <---------ANAC58                         <------MYB46(1)                                            <---------ANAC58                     --------->MYB52(2)                                             <---------ANAC46                   <---------MYB52(1)               <---------ICU4                 --------->ATHB12              --------->ARR14(2)                    --------->ZAT6             --------->ATHB12          <-------TEIL   <------MYB83            --------->YAB1               <---------YAB1 ---->MYB52(1)<---------ARR14(2)                 <---------ICU4 ------>ZmHOX2a(2)<---------WOX13(1)   actgaatccaaattcatattcgtaagttggttaattggctaatttgcaaaataatcactacgttgatccatagtttagttttgattgagtggttcttaat  24421600                                                            --------->WRKY18(1)                                                           <------NtERF2                                                           ------>NtERF2                                                         <---------ANAC58                                                         <---------ANAC58                           <                                                         <---------ANAC46                           -                                                   ----------->RAV1(1)                              -                                                --------->ANAC46                                    <                                                --------->ANAC55(1)   --------->ZAT14            <---                --------->AHL20(1)              --------->ANAC58      <---------ZAT18            <---                <---------AHL20(2)           --------->ARR14(2)--------->ANAC58                  <---                --------->AHL20(2)           <---------ARR14(2)--------->ANAC58              <-------            <---------AHL20(2)      --------->ANAC46 <-----------RAV1(2)                     <-------         ----------->GT1          <-----------GT1  <---------ALFIN1   --------->ZAT18  --------->ARR11(3)    --------->ZAT18            ----------->ARR10--------->ANAC58      <---------ZAT14  <---------ARR11(3)   ttcatatgcactagtaaattttttggtttggctaatatactcgaccctatacgccacaggcgggcaagccagtgtactcagcgatggaacatcttacttg  24421700       <---------MYB59 --------------->AtSPL8 --------------->AtSPL3 ---------ZAT14 -------->ZAT14 -------->ZAT18 ---------ZAT18                                                        --------->WRKY18(1) ------ANAC46                         --------->MYB52(1)           --------->ZAT14 ------ANAC58               <---------ANAC46                   --------->DAG2 ------ANAC58               <---------ANAC58                  ---------->DOF2                 ------- --ANAC58------>MYB83       <---------ANAC58               --------->At4g35610       <-----------RAV1(1) --ANAC58------>MYB46(1)  <-----------HVH21            --------->GLK1(2)        --------->CCA1(2)   agtgcagtacctacatatgtgattaaactgtcgtatagagtaacgaatgaagaagcgaatcagataaagttcagtcaagaagagacgatgttggacatta  24421800                                                                                                   <-                                                                                                  ---                                                                                               <-----                                                                                            ---------                                  <---------------AGL15                                     ---------                                  ===================================================================MADS_MADS                         <----------DOF2              --------->ANAC46                      ---------                     --------->DAG2                 <---------HSFB2a(2)                     ---------             --------->At5g28300  --------------->AGL15     <----------DOF2          --------------->AGL15    <----------DOF2 ---------->DOF2                 --------->HSFB2a(2)              <---------------AGL15 -->ICU4    ----------->GT1      ----------------->AGL2---------->DOF2         --------->ZAT6<-------   tgccttctttaagacagtaacaaaaagcttttagtaccagtagtagcaaaacttccacaaagctttaatgtcaacatactaacactactactacaagtaa  24421900  Previous    Next  AGI:  At1g65650.1    Description:  UCH2; ubiquitin thiolesterase. similar to UCH1, ubiquitin thiolesterase [Arabidopsis thaliana] (TAIR:AT5G16310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60599.1); contains InterPro domain Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) Range:  from: 24418678    to: 24421372    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65660.1    Description:  SMP1 (swellmap 1); nucleic acid binding. Identical to Pre-mRNA-splicing factor SLU7-A [Arabidopsis Thaliana] (GB:Q9SHY8;GB:O04483;GB:Q84WT4); similar to SMP2 (swellmap 2) [Arabidopsis thaliana] (TAIR:AT4G37120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71409.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79297.1); similar to hypothetical protein OsI_026691 [Oryza sativa (indica cultivar-group)] (GB:EAZ05459.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 24421770    to: 24424955    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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