Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ------>NtERF2                                                                                        --------->WRKY38(1)                                                                                        ----------->HVH21                                                                                        --------->WRKY12                                                                                       <----------CDC5                                                                                      <---------At4g35610                                                                         <---------ARR14(2)   ------>MYB46(1)                     <---------------AGL15                               --------->ARR14(2)   ------>MYB83                    ----------------->AGL3                              <---------DEAR3(2)  <--------                   ------>MYB46(1)                                  <---------MYB46(3)--------->At4g35610                   ------>MYB83                                    <---------AtMYB61--------->MYB46(3)         ------>ZmHOX2a(1)                                         --------->ALFIN1------->TEIL  ----   tagtcattgtcctcaaaaacctcccaatttgagtttctctcaatggatgaggtctcacatcaagactaggtggtcgattcggatgaaccgctgacctaat  24387300                         <---------ALFIN1                        --------->ZAT14                       <---------ALFIN1                      --------->ANAC46                       <---------MYB52(1)                    <-----------GT1                      ------>NtERF2                 <---------ARR14(2)                --------->GLK1(2)                 --------->ARR14(2)                <---------ARR14(2)                 <---------GLK1(2)                 ------->TEIL                        <---------At5g28300               <---------TOE1(2)              --------->MYB52(1)                      <-----------GT1            ------>ZmHOX2a(2)               --------->DOF5.7(2)                   --------->ICU4          --------->ARR11(3)                <---------MYB52(1)                    <---------YAB1          --------->ARR14(2)               --------->LBD16<------NtERF2  <---------ARR14(2)          <---------ARR14(2)           --------->GLK1(2)<---------ARR14(2)      <---------ANAC46   <----------DOF2 <-------TEIL   ------>MYB46(1)  --------->ARR14(2)    --------->ARR14(2) -MYB59   <---------ARR11(3)      ------>MYB83<---------DOF5.7(2)      --------->DEAR3(1) ----->YAB1<------ZmHOX2a(2)  -------->P <---------LBD16--------->ARR14(2)<------ZmHOX2a(2)   cggaactttgaagatcccagattcaccacacttaccaacaaattccggtaacgaatcggagccgtttccatcaccgatcccgtcgtgattaccgtcttcg  24387400                                                       --------->ANAC46                                                    --------->DEAR3(1)                                                    --------->ETT(2)                                                    <---------DEAR3(1)                 --------->At4g35610                                                   --------->ATERF1(1)              <------ZmHOX2a(1)                                                   <------NtERF2                --------->LBD16                                                 <---------ETT(2)              --------->DEAR3(1)                                         <-------GAMYB<---------LBD16         <------NtERF2                                        <---------MYB46(3)                    <---------LBD16                                        <-----------RAV1(1)                   --------->ATERF1(1)                         <---------ANAC55(2)  <-----------RAV1(1)            ------>NtERF2           --------->HSFB2a(2)          --------->MYB55(2)                   <---------ATERF1(1)           <---------HSFB2a(2)        <---------MYB52(1)                    <---------DEAR3(1)          <---------ETT(2)         <-------TEIL  <---------ANAC46           --------->DEAR3(1)       --------->LBD16   --------->ANAC55(2)<---------At4g35610           <-----------HVH21     <---------LBD16  <------ZmHOX2a(2) --------->MYB52(2)           <-------TEIL<------NtERF2  <----   cttagtctccggtcgagaaattggatcatgtaatcgatacgtttgttgctgtcgtcgacggaaggctgagattcatcgtcgccggaggaagatgaagagg  24387500                                    <---------ANAC46                                    <---------DEAR3(1)                                   <---------LBD16                                   --------->ATERF1(1)                                  <---------RRTF1(1)                                  <---------RAP2.3(1)                                 <---------RRTF1(2)                                 <---------RRTF1(3)                                 <---------RAP2.3(3)                                 <---------DEAR3(1)                                 <---------ANAC58                                 <---------ANAC46                                 <---------RAP2.3(2)                                 <---------ANAC58                                            ------>ZmHOX2a(2)                      ----------->HVH21                                                     <------ZmHOX2a(2)                   <---------ANAC58------>NtERF2                                           --------->ARR14(3)                   <---------ANAC46<------NtERF2                    --------->TGA2(2)      <---------ARR14(2)                   <---------ANAC58<---------At4g35610             <-----------TGA1        <---------ARR14(3)         <---------MYB46(3)      <---------RAP2.6(2)              --------->ANAC46         <---------ARR11(3)         ----------->GT1     --------->GLK1(1)                    --------->ANAC58         --------->ARR14(2)      --------->MYB52(1)     <---------GLK1(1)                    --------->ANAC58     <-----------GT1  <---------At4g35610 --------->WRKY12<------NtERF2        <------ZmHOX2a(1) <---------YAB1--------->ARR11(3)  <---------ZAT2--------->DAG2  <---------LBD16            =============================HOX2a_HOX2a  --------->At4g35610--------->ALFIN1--------->LBD16      ----------->GT1  --------------------->WRI1 --ZmHOX2a(1)  ---------->DOF2 --------->ALFIN1 <------ZmHOX2a(1)<-----------STF1------>ZmHOX2a(2)   agtaagctgaacggttgaaaagcgtggacggagttgcggcggagaaggaaggagagaagaaggagaaaacgtcatcgttttgatcgttttgacgatcttc  24387600                                                                                     --------->ANAC58                             --------->At4g35610                        <---------CCA1(1)                             <---------At4g35610                        <---------RVE1(1)                       <---------ANAC46                                <---------ARR11(3)          --                       <---------ANAC58             --------------->AtSPL3           --------->ANAC58                       <---------ANAC58           <-----------GT1      --------->ARR11(3)         <--                  <----------DOF2     --------->CCA1(2)   ---------->DOF2  <-----------GT1        ---   catgagtattggacttgaagcttttacttggagcagagagagacgacgagtttttcggtacaaagcctctcgagatatttctctctcaagctaaatcgca  24387700                         ------>ZmHOX2a(2)                        --------->GLK1(1)                        <---------GLK1(1)                        <------ZmHOX2a(2)                       --------->ARR14(2)                       <---------ARR14(2)            --------->ALFIN1           ------->MYC3<---------AGP1                                    --------->YAB1           <-------MYC3<-----------ARR10                             <---------AHL20(2)          <---------ANAC55(1)                                    <---------AHL20(2)          --------->ANAC55(2)                                    --------->AHL20(2)   <---------ANAC58    <---------ARR11(3)                    --------->AHL20(2)   <---------ANAC58    --------->ARR11(3) *TSS               <---------AHL20(2)                    -- ------->GLK1(1)      <---------CCA1(2) ---------->ID1      --------->ICU4 <----------ID1       <---- -------ARR14(2)    <---------ANAC46--------------------->WRI1  <---------AHL20(2)         ---------- ------>ARR14(2)   <---------LBD16  <----------DOF2         <---------AHL20(2)      --------------->AtSPL8   gaaatgcttgaaacgtgttgtttcggatctctcgttttctttgtttttttcagacattcgaaattatttattttataacaacaaaatttgtacttgtaaa  24387800                                                                                               ------                                                                                              <------                                             ----------->GT1                                  -------                                      <------MYB46(1)                                     --------->HSFB2a(2)                                      ----------->GT1                                     <---------HSFB2a(2)                                      <------MYB83                                    ------->GAMYB                                    <---------WOX13(1)                  <----------DOF2  --------->ZAT14 --------->GT1                     <------------CBF               <---------GLK1(2)  --------->ZAT6 --------CBF <----------DOF2---------->DOF2 --------->DAG2  --------->bZIP60(1)    <-----------GT1 <- ->GT1      --------->TOE2(3)--------->DAG2---------->DOF2  <---------bZIP60(1)    --------->MYB52(1)   ttggtaaaaacaaacctttataacaaaaaaaaaagtagattggtaaaaagtaaaacttactgatgtcaaattctcttttttggattaacagtccagaaat  24387900                           --------->AHL20(2)                           <---------AHL20(2)      <---------GLK1(2)   --------->AHL20(2) --->GLK1(2)              <---------AHL20(2)               <-----------HVH21 ---GLK1(1)               <---------AHL20(1)           <---------AHL20(1) -->GLK1(1)            <---------AHL20(2)      <---------TOE1(2)                   <-----------GT1 ----------HVH21      --------->AHL20(2)       <---------TOE2(2)   <---------GLK1(2)       <---------AtMYB61   ctgtcacaaattctctgttttggattaatttttttagttcttaaaatcgtatgttaatatatgtcatttgattctctgttttatattactgttttggtct  24388000                                        <------MYB46(1)                                        <------MYB83                                        <---------MYB46(3)          --------->TOE2(3)             <---------MYB46(3)        <---------AtMYB61            --------->TOE1(3)            <---------MYB52(1)      <-----------RAV1(1)           -------->P       <---------ARR14(2)      *TSS <-------GAMYB   <---------MYB46(3)             --------->YAB1           --------->ARR14(2)     <----------DOF2<----------DOF2 --------->ALFIN1     <---------YAB1            --------->GLK1(2)   aattcttcttttccgttgttccctttcgattgttcaatgtgttggtttgattttggtttatgataacttacctcaaaaccaagagaatttggaagacaat  24388100                                 --------->ARR11(3)                                  --------->GLK1(1)                                 <-----------GT1                                     <---------GLK1(1)                                 <---------ARR11(3)                            --------->CCA1(2)                                --------->RVE1(1)                             --------->ARR11(3)                                --------->CCA1(1)          <---------DAG2     --------->ARR14(2)                          <-------TEIL                     <----------DOF2    <---------ARR14(2)  <--                       ----------->GT1                 <-----------GT1       <------ZmHOX2a(1)   <---                      <---------------AtSPL8   <---------ATHB12            <---------ANAC46      <---                      --------->DAG2       --------->At4g35610        <---------bZIP60(2) --------->ANAC58                --------------->AGL15      <---------At4g35610        <---------ANAC46    --------->ANAC58                <---------------AGL15     --------->ANAC46<---------DAG2--------->ALFIN1  <---------TOE2(3)   ttcaacaagctgtttgaacttcataaggtacaaaatatccctctcagcaatcgattactacctttttggatgatgtggaggatatggaaatcaaggaatg  24388200  Previous    Next  AGI:  At1g65580.1    Description:  FRA3 (FRAGILE FIBER3); inositol or phosphatidylinositol phosphatase. Identical to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (FRA3) [Arabidopsis Thaliana] (GB:Q84W55;GB:O04475;GB:Q5MK18;GB:Q9XFT1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN68138.1); similar to unnamed protein p Range:  from: 24380977    to: 24387742    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65585.1    Description:  pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)} Range:  from: 24388006    to: 24388841    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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