Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ARR14(2)                                                        <---------ARR14(2)                                                    --------->ANAC58      <---------At4g35610                                                    --------->ANAC46      --------->At4g35610                                                    --------->ANAC58      ------>NtERF2                                <<<<<<<<<TBF1      <---------LBD16   ------>ZmHOX2a(1)                           <----------DOF2        <-----------GT1   <---------ANAC58                 --------->ANAC46                 --------->MYB52(1)<---------ANAC58                 --------->ANAC58         <----------DOF2       --------->WRKY12                 --------->ANAC58         --------->TOE2(3) ------>ZmHOX2a(1)   atagaacccctccattaacacgctcgactctttcttcttcacatctttaaaatcacggtatcctcgttgtccttgccgctcaatacttgaaaaacattga  24369600                                                                                <------------CBF                                  ----------->GT1                             --------->ICU4  <------                               --------->ANAC46                  --------->ANAC58         <----------   --------->ANAC58       --------->ZAT6            ---------->DOF2          --------->At5g28300 ----   --------->ANAC58       <-----------GT1     ------>ZmHOX2a(1)  --------->ANAC58         -----------   accgtaggcaaatgttcacttagagatttcactacgtcgtaacttctccttcgaagaagcgctcgtgaagccatattgcagtaattgtgtagctatatac  24369700                                  --------->ATHB12                             --------->ZAT14                             <---------ZAT14                       <---------ARR14(2)       <-----------GT1 --------->ARR14(2)   <-----------TBP     ------>MYB46(1)   <---------AHL20(2)  ------>MYB83<------------CBF      <------ZmHOX2a(2)   --------->AHL20(2) --------->WOX13(1)                --------->ARR11(3) <-----------TBP    ------------>CBF                    <---------ARR11(3) -----GT1      <-------TEIL<---------ZAT14        <---------YAB1                                <---- -----AGL15 --------->ZAT2 --------->ZAT18     <---------ARR11(3)                               ----- ------->GT1--------->At4g35610 --------->At5g28300  <---------WOX13(1)   ---------->DOF2--------->ATHB12 ---->AGL15--------->ANAC46--------->ZAT14     --------->GLK1(2)   ---------->DOF2  <---------YAB1   agtatatatataccagctacataccaatctgcacagtgattgtatgaaaaatctgatagatcatttcacaaaagacaaaagaaaacatgaatgattcaga  24369800                            ============================HOX2a_HOX2a                            <------ZmHOX2a(2)                           <---------ARR11(3)                           --------->ARR11(3)                     <---------HSFB2a(2)                     --------->HSFB2a(2)                                                           --                 <-------GAMYB                   ------>ZmHOX2a(1) --------->TOE1(3)               -- -----GLK1(2)   --------->MYB52(2) <---------At4g35610             --------->TOE2(3)            <---- ---->ARR11(3)  <---------MYB46(3) --------->At4g35610------------>CBF                      ---------   tttttcaaatggattagttcgttgtagaagatcactaagctctctcaagtcctaaattcaatttctaaacctgaattacaaaatttgcagtcgattcaat  24369900                      <---------WOX13(1)                     <---------ANAC58                     <---------ANAC58                     <------------CBF                    --------->ATHB12                  <---------WOX13(1)               <---------YAB1           --------->YAB1          --------->ATHB12  --------->ANAC58 ------->GLK1(2) <------------CBF    <---------At4g35610 ----->TEIL<------------CBF --------->ANAC58 -----ATHB12   <---------TOE2(3)<------------CBF                      ----------->TGA1 --->CBF <---------YAB1  <----------ID1<---------YAB1               <---------AtLEC2        ---------   gaatctgaaacacgattgagattgattgcgacgaaattgagatgataacagaaacgagagacttaaatttggatgacgaaaatggagaagacttacatct  24370000                          <------ZmHOX2a(1)                     ===============HOX2a_HOX2a                     ==================HOX2a_HOX2a                     <------ZmHOX2a(1)                 <---------ANAC46       --------->ALFIN1               <---------ZAT14         <-------MYC3              --------->ALFIN1         ------->MYC3            <---------ANAC46     --------->YAB1            --------->ALFIN1    <------ZmHOX2a(2)           ============================HOX2a_HOX2a                                           <-------           <------ZmHOX2a(1) ------>ZmHOX2a(2)                                             <------NtERF2        ===============================HOX2a_HOX2a                                  --------->GLK1(2)        ============================HOX2a_HOX2a                           ----------->GT1<---------DEAR3(1)        <------ZmHOX2a(1) =============HOX2a_HOX2a                  ---------->DOF2<---------GLK1(2) >REM1(1)  =========================HOX2a_HOX2a             <----------DOF2<-----------HVH21 <-------   acagagaagaggaggagtggagaggaaaggatcgatcaaaacgtggaagacaatccaaaatactttgagaaaaagaccgtcaaaagaatcgtcgtcgtca  24370100                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                             --------                                                                        <---------DEAR3(2)  <--------                                                                       --------->ETT(1)  --------->ARR14(2)                 >>>>>>>>>TBF1              --------->At4g35610   <---------ANAC58       <---------ARR14(2)              >>>>>>>>>TBF1             --------->ARR14(2)        <---------ANAC58     <---------DEAR3(2)        >>>>>>>>>TBF1                   <---------ARR14(2)        <---------ANAC46     <---------MYB46(3)   --------->DEAR3(1)          <-------TEIL <---------At4g35610  <---------LBD16    <-----------HVH21 <---------At4g35610   >>>>>>>>>TBF1<-------MYC3          <---------MYB52(1)   --------->ARR14(2) --------->At4g35610>>>>>>>>>TBF1   ------->MYC3     <---------WRKY18(1)<---------MYB46(3) <---------LBD16 ----TGA1  >>>>>>>>>TBF1   <XXXXXXXXXXXXXXXXXXXXMIR782<---------At5g28300      <---------ARR14(2) ----HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <-----------GT1 <-----------HVH21--------->ETT(1)   ctgagccgaagaagaagaagaagaagaagaagattcaacgtgtttctgctgattttgaccgttttgtttcgggtcgggtcgaatcgggtcgggtccggat  24370200 ---->CCA1(2)            --------->LBD16 ---->GLK1(1)           <---------ANAC46              <----------DOF2                            ---- --->ARR14(2)  <---------GLK1(2)                     <---------YAB1                     <----------DOF2 ----ARR14(2)  --------->ARR14(2)                 <---------ATHB12            <-----------GT1 ------- ->LBD16       <---------ARR14(2)             <---------MYB59             <----------DOF2     <------ -ANAC46   <---------LBD16                 <-----------GT1           --------->YAB1  <---------AHL20(2)   atacaaatactgcttcggattctctaccgtagaactattacagtattacccaattacttttgttttttgaataatgctttttaccatttactttgcagca  24370300                                                                              <---------ICU4                                                                             <---------YAB1          --------->ANAC58                                                 --------->YAB1          --------->ANAC58                                                 <---------ICU4          --------->ZAT6                                                  <---------YAB1 --------->ARR11(3)                                                     <---------ICU4 <---------ARR11(3)                                            <---------ATHB12      <---------HSFB2a(2) ------>DOF2      --------->TOE1(3)             --------->AHL20(2)     --------->ICU4--------->HSFB2a(2) -->At4g35610     --------->TOE2(3)             <---------AHL20(2)     <---------ATHB12            <- ---At4g35610    <---------ICU4         <---------AtLEC2 <-----------GT1--------->YAB1 ---------->DOF2   aaagaacttctaacgctaaacattaacaagacttcttcatttccatgaaattaatcgttttactaatcaactaatcatcatcattttccaaaagcattca  24370400                                                                             --------->ANAC58                                                                   --------->ANAC55(2)                                                                   <------MYB46(1)                                           --------->YAB1          <------MYB83                                          <---------YAB1          --------->MYB111(1)                    --------->DAG2      --------->YAB1            --------->MYB59              --------->YAB1            <---------ICU4            --------->MYB46(2)        --------->ANAC46               --------->ICU4             --------->MYB111(2)        --------->ANAC58      --------->ANAC58   <---------WRKY38(1)     --------->YAB1   <---------AHL20(2)        --------->ANAC58      --------->ANAC58  <<<<<<<<<WRKY6   <---------MYB55(1)      --------->ICU4  <---------YAB1   ---------->DOF2     <---------ATHB12          <--------P---------->DOF2--------->AHL20(2) --------ATHB12  <---------AHL20(2)  --------->YAB1           --------->DAG2 --------->ANAC58   aatgatcaataagcaatattaaaaagtcagtctagccactaatcatcatagtcaacaatttccaaaggtaggtaatgaaaagcacttagtaattttttgt  24370500  Previous    Next  AGI:  At1g65540.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.2); similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.1); similar to H0306B06.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67493.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46335.1); similar to hypothetical protein OsI_007861 [Oryza sativa (indica cultivar-group)] (GB:EAY86628.1); contains InterPro domain LETM1-like (InterPro:IPR011685); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-h Range:  from: 24366045    to: 24369674    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65541.1    Description:  unknown protein Range:  from: 24369973    to: 24370068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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