Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ------->MYC3              <-------MYC3             --------->TGA1a             --------->O2         <---------ALFIN1       ================MYC_MYB       --------->RAP2.6(2)       ------->GAMYB      --------->MYB46(3)     -------->P     ==================MYC_MYB    --------->MYB52(1)   --------->MYB46(3)--------->MYB52(1)                                                 <-----------GT1 --->LBD16 <---------ALFIN1                                                          --------->TOE2(3) ---HSFB2a(2)<---------O2                                                      --------->At4g35610 -----RAV1(2)<---------TGA1a                                               --------->TOE2(3)       -- -->HSFB2a(2)--------->ANAC46                                        <----------DOF2 --------->TOE1(3) --LBD16--------->ZAT18             <---------GLK1(1)          <----------DOF2 <---------At4g35610--- ->LBD16<---------ZAT18             --------->GLK1(1)  --------->AHL20(2)  --------->TOE1(3) --------   aagaaacaaccgcacacgttgcataatggatatatcagatttctgtgattcttccaatttcatagctttagctttagccttagctaaacttaacccctca  24369300                        --------->HSFB2a(1)                        --------->HSFC1(2)                        <---------HSFB2a(1)                   <------ZmHOX2a(1)                  --------->LBD16                               --------->YAB1           --------->ANAC46                          ---------->ID1                                 <    --------->bZIP60(2) <---------HSFC1(2)          <-----------GT1 <-----------HVH21           <---- ----->GAMYB   ------>ZmHOX2a(1)      <---------ANAC58   <---------DAG2                   ---------->DOF2 ------>MYB46(3)<-----------RAV1(2)   <---------ANAC58   <----------DOF2             <---------MYB52(1) ->ANAC46<---------ALFIN1    <----------DOF2   <---------DAG2  <---------YAB1      <---------MYB46(3)   acagcctcatcacactcctcaggagaagcttctttagtttgcgaggtaaccttttctccctttttatcatggtcaggcttattagccgttgccaaagacg  24369400                   <---------ATHB12                  ------>MYB83        ----------->GT1<---------CCA1(2)       <---------WOX13(1)    ---------->DOF2--------->YAB1 -------TEIL     --------->WOX13(1)  --------->DAG2 -----------AtSPL8------>MYB46(1)<------ZmHOX2a(1)                               <---------ZAT14   agtacatagattgaaaaaccaatctatatcccaaaggataaggcaattctaatattccaactccattactaaaacttggagactgaagtaatctacttct  24369500                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                    --------->ANAC58      <---------At4g35610                                                    --------->ANAC46      ------>NtERF2                                                    --------->ANAC58      --------->At4g35610                                <<<<<<<<<TBF1      <---------LBD16   ------>ZmHOX2a(1)                           <----------DOF2        <-----------GT1   <---------ANAC58                 --------->ANAC58                 --------->MYB52(1)<---------ANAC58                 --------->ANAC46         <----------DOF2       --------->WRKY12                 --------->ANAC58         --------->TOE2(3) ------>ZmHOX2a(1)   atagaacccctccattaacacgctcgactctttcttcttcacatctttaaaatcacggtatcctcgttgtccttgccgctcaatacttgaaaaacattga  24369600                                                                                <------------CBF                                  ----------->GT1                             --------->ICU4  <------                               --------->ANAC46                  --------->ANAC58         <----------   --------->ANAC58       <-----------GT1           ---------->DOF2          --------->At5g28300 ----   --------->ANAC58       --------->ZAT6      ------>ZmHOX2a(1)  --------->ANAC58         -----------   accgtaggcaaatgttcacttagagatttcactacgtcgtaacttctccttcgaagaagcgctcgtgaagccatattgcagtaattgtgtagctatatac  24369700                                  --------->ATHB12                             --------->ZAT14                             <---------ZAT14                       <---------ARR14(2)       <-----------GT1 --------->ARR14(2)   <-----------TBP     ------>MYB46(1)   --------->AHL20(2)  ------>MYB83<------------CBF      <------ZmHOX2a(2)   <---------AHL20(2) --------->WOX13(1)                --------->ARR11(3) <-----------TBP    ------------>CBF                    <---------ARR11(3) -----GT1      <-------TEIL--------->ZAT14        <---------YAB1                                ----- -----AGL15 --------->ZAT2 --------->ZAT18     <---------ARR11(3)                               <---- ------->GT1--------->At4g35610 --------->At5g28300  <---------WOX13(1)   ---------->DOF2--------->ATHB12 ---->AGL15--------->ANAC46<---------ZAT14     --------->GLK1(2)   ---------->DOF2  <---------YAB1   agtatatatataccagctacataccaatctgcacagtgattgtatgaaaaatctgatagatcatttcacaaaagacaaaagaaaacatgaatgattcaga  24369800                            ============================HOX2a_HOX2a                            <------ZmHOX2a(2)                           --------->ARR11(3)                           <---------ARR11(3)                     --------->HSFB2a(2)                     <---------HSFB2a(2)                                                           --                 <-------GAMYB                   ------>ZmHOX2a(1) --------->TOE1(3)               -- ---->ARR11(3)  --------->MYB52(2) --------->At4g35610             --------->TOE2(3)            <---- -----GLK1(2)   <---------MYB46(3) <---------At4g35610------------>CBF                      ---------   tttttcaaatggattagttcgttgtagaagatcactaagctctctcaagtcctaaattcaatttctaaacctgaattacaaaatttgcagtcgattcaat  24369900                      <---------WOX13(1)                     <---------ANAC58                     <------------CBF                     <---------ANAC58                    --------->ATHB12                  <---------WOX13(1)               <---------YAB1           --------->YAB1          --------->ATHB12  --------->ANAC58 ------->GLK1(2) <------------CBF    <---------At4g35610 ----->TEIL<------------CBF --------->ANAC58 -----ATHB12   <---------TOE2(3)<------------CBF                      ----------->TGA1 --->CBF <---------YAB1  <----------ID1<---------YAB1               <---------AtLEC2        ---------   gaatctgaaacacgattgagattgattgcgacgaaattgagatgataacagaaacgagagacttaaatttggatgacgaaaatggagaagacttacatct  24370000                          <------ZmHOX2a(1)                     ==================HOX2a_HOX2a                     ===============HOX2a_HOX2a                     <------ZmHOX2a(1)                 <---------ANAC46       --------->ALFIN1               <---------ZAT14         <-------MYC3              --------->ALFIN1         ------->MYC3            <---------ANAC46     --------->YAB1            --------->ALFIN1    <------ZmHOX2a(2)           =========================HOX2a_HOX2a                                              <-------           <------ZmHOX2a(1) ------>ZmHOX2a(2)                                             <------NtERF2        ===============================HOX2a_HOX2a                                  --------->GLK1(2)        ============================HOX2a_HOX2a                           ----------->GT1<---------DEAR3(1)        <------ZmHOX2a(1) =============HOX2a_HOX2a                  ---------->DOF2<---------GLK1(2) >REM1(1)  ============================HOX2a_HOX2a          <----------DOF2<-----------HVH21 <-------   acagagaagaggaggagtggagaggaaaggatcgatcaaaacgtggaagacaatccaaaatactttgagaaaaagaccgtcaaaagaatcgtcgtcgtca  24370100                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                             --------                                                                        <---------MYB46(3)  <--------                                                                       --------->ETT(1)  <---------ARR14(2)                 >>>>>>>>>TBF1              <---------At4g35610   <---------ANAC46       --------->ARR14(2)              >>>>>>>>>TBF1             --------->ARR14(2)        <---------ANAC58     <---------MYB46(3)        >>>>>>>>>TBF1                   <---------ARR14(2)        <---------ANAC58     <---------DEAR3(2)   --------->DEAR3(1)          <-------TEIL --------->At4g35610  <---------LBD16    <-----------HVH21 --------->At4g35610   >>>>>>>>>TBF1<-------MYC3          <---------MYB52(1)   --------->ARR14(2) <---------At4g35610>>>>>>>>>TBF1   ------->MYC3     <-----------GT1 <-----------HVH21--------->ETT(1) ----HVH21 >>>>>>>>>TBF1   <XXXXXXXXXXXXXXXXXXXXMIR782<---------At5g28300      <---------ARR14(2) ----TGA1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------WRKY18(1)<---------DEAR3(2) <---------LBD16   ctgagccgaagaagaagaagaagaagaagaagattcaacgtgtttctgctgattttgaccgttttgtttcgggtcgggtcgaatcgggtcgggtccggat  24370200  Previous    Next  AGI:  At1g65540.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.2); similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.1); similar to H0306B06.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67493.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46335.1); similar to hypothetical protein OsI_007861 [Oryza sativa (indica cultivar-group)] (GB:EAY86628.1); contains InterPro domain LETM1-like (InterPro:IPR011685); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-h Range:  from: 24366045    to: 24369674    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65541.1    Description:  unknown protein Range:  from: 24369973    to: 24370068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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