Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------------->AGL15                                                                =================================MADS_MADS  <---------MYB46(3)                                           ----------->RAV1(2) --------->ALFIN1                                              <---------ANAC46 ----------RAV1(1)                                             ----------------->AGL1 ------->ALFIN1                                              <-----------GT1 ---->DOF2                                                <--------HAHB4 >AGL15                                                   <---------ICU4 -AGL15                                                   --------->ATHB51 --AGL3                                                   --------->YAB1                            - ->AGL3                                                   -------->HAHB4                            < --AG                                                     -------->ATHB1                           <- ->AG                                                    <---------ATHB12                         --- ->AGL1                                <-----------GT1   <---------YAB1                       <------ --AGL1                              --------->YAB1      --------->ICU4          --------------->AGL15 --AGL2              <---------At4g35610  <----------DOF2<---------ATHB51        <---------------AGL15 ->AGL2 --------->GLK1(2)          <---------ARR11(3) --------->AHL20(2)        <-----------------AGL1   agtgtgggtgattctggctgtttagatgcttagacataatcttactttctatccaactaattattacctgtaactgtaagtttcaattttaggcatttta  24258200          --------->AHL20(2)          <---------AHL20(2)      <---------YAB1                                                                     --------->AHL20(2)     <---------AHL20(2)                                                                <----------DOF2     --------->AHL20(2)                                                                --------------     <---------AHL20(1)                                                                <-------------     --------->AHL20(1)                                                               ---------------    <---------AHL20(2)                                             --------->TOE2(3)  <--------------    --------->AHL20(2)  --------->YAB1                      --------->AHL20(2)        ===============    --------->YAB1   --------->YAB1                         <---------AHL20(2)        --------->TOE2(3) <---------ICU4      <---------ICU4                      --------->TOE2(3)         <-----------GT1 --------->YAB1 --------->AHL20(2)                     --------->ARR11(3)     --------->AHL20(1) -------->AHL20(2) --------->AHL20(1)                  --------->AHL20(1)     <---------AHL20(1) ---------AHL20(2) --------->AHL20(2)                  <---------ARR11(3)   --------->AHL20(1) --------AHL20(2) --------->YAB1                      --------->CCA1(1)     <---------AHL20(1) ------>YAB1   --------->YAB1  ----------->GT1        --------->RVE1(1)    --------->AHL20(2)   ----- ---AHL20(2)  --------->AHL20(2)                ----------->GT1 <-----------GT1<---------AHL20(2) <--   tattaattatattaaaataaaaataataacaaatagaaaaatgtatagagaagaaaatatcttaaattacctttgaaatatatattttcctttaaatgga  24258300                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)      <---------AHL20(2)                                                           --------->RVE1(1)    ----------->TBP                                                         ----------->GT1 ->AGL15                                                                   --------->DAG2 --AGL15                 <---------ANAC55(2)                          --------->LBD16 >AGL15           <-----------GT1                                   ------>NtERF2  --------->CCA1(1) ---AGL3      --------->AHL20(2)         <-----------GT1            <-----------------AGL1 =====================================================================================MADS_MADS -->TEIL      <---------AHL20(2)   ------------>CBF                 <-----------------AG --------DOF2--------->AHL20(2)<---------YAB1            ----------->GT1 ---------->DOF2      -------   ctttctatataaaaaataaatcacattacatatatgatacaattttccccctaaatgtctggttttatgccccccaaaaggtaaaatatctatatgggct  24258400                                              --------->ANAC55(2)                                              --------->ANAC55(1)                                              <---------ANAC55(2)                                              --------->ANAC58                                              --------->ANAC58                        <-----------GT1     <---------ALFIN1                <---------ICU4             -------->P               <---------YAB1         --------->ANAC46                              <------------CBF             --------->YAB1           --------->ANAC58                          --------->YAB1             <---------ICU4           --------->ANAC58                   --------->LBD16            <---------ATHB12     <---------ATHB12                    --------->ARR14(2)            --------->ICU4     --------->WOX13(1)                    <---------ARR14(2)     ----------->GT1  <----------DOF2------->MYC3                ----------------->AGL1   --------->YAB1     <---------DAG2 <-------MYC3       ---------->DOF2  ------>ZmHOX2a(1)        ---   ---------->DOF2 <-----------GT1--------->YAB1 --------->MYB52(1) <---------CCA1(2) ----------->GT1 -->At4g35610-------->HAHB4  ------------>CBF --------->ANAC46 <-----------GT1 --------->AHL20(2) ---   gtctataaagataaatgattatcactttaccatcaatcacatgccaacacgtaagggtgaaagtaataccatatcctgaaaataaaaattgaaaatagtc  24258500         --------->YAB1    ------------>CBF   --------->ANAC58                 ------------>CBF   --------->ANAC58              <---------AHL20(2)       --------->ANAC58 ---------->DOF2               ----------->TBP            --------->ANAC58             --------->CCA1(2) ------>ANAC58             ----------->GT1    ------>ZmHOX2a(1)                       --------->ARR11(1) ------>ANAC58       <---------AHL20(2)  --------->YAB1 ---------->DOF2        ------------>CBF -----   cagcaaagcaataagaaacacattttatctagtatataaacaatcgtcctcatgctaacaaagcaaaacacatataacaaaaacaatagatatgaagaga  24258600                                                                                      <---------STY1(2)           --------->TOE2(3)                                                          --------->ZAT2          ----------->GT1                                                             <---------ZAT2         <---------TOE1(3)                                                       -------->P <--------         <---------YAB1                                            ----------->TGA1------->GAMYB         <---------TOE2(3)                                       >>>>>>>>>NAM   --------->MYB52(1)        <---------DOF5.7(2)                                 ---------->DOF2   <---------MYB52(2)   <- ----->DOF2--------->TOE1(3)       <------ZmHOX2a(1)---------->DOF2----------->HVH21  --------->STY1(2)   aagatgaagttatcgttaatagaaaacagtgtatcgaggaaaacaacattcaccaaaaggaagaaagggatgacgaagaaactaaccgagctagtcactc  24258700                 <---------ZAT18                 --------->ZAT18                --------->ALFIN1               ------->MYC3                                  <-----------HVH21               <-------MYC3                                  <---------RAP2.6(3)               <-------MYC2                                 --------->RAP2.6(2)               ------->PIF4                                ----------------->AGL1      <---------ANAC46               <-------PIF5                              <---------WRKY18(1)        --------->ALFIN1               <-------PIF4                           <---------ANAC58            <---------ANAC58               ------->PIF5                           <---------ANAC58            <---------TGA1a               ------->MYC2                      --------->LBD16                  <---------O2               ------->MYC4                     --------->LBD16                   --------->O2  <----    <---------ANAC46                           <---------LBD16           <---------ANAC46<------NtERF2  <---------ANAC46                           <------ZmHOX2a(2) <---------WRKY12   <---------bZIP60(2) ---GT1<---------REM1(1)                    <---------ARR14(2)<------NtERF2       <---------ANAC58 ----------RAV1(1)<---------RAP2.6(2)       --------->ARR14(2)--------->WRKY18(1) <---------ANAC46   tatgtggtgttgaagcatgtgcggtcgtctatagtccgttcaactcgatcccggaggcttggccgtcaagggaaggcgttgaagacgtggtgtcgaaatt  24258800                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                             <-------                    ----------->HVH21                                                        --------           --------->ALFIN1                                           ---------->DOF2       ---------           <-----------RAV1(1)                                  --------->ARR14(2)        <---------At4g35610        <---------At1g77200                                     <---------ARR14(2)     --------->At4g35610        <---------DEAR4(1)                         --------->YAB1 ------>ZmHOX2a(2) --------->At4g35610        <---------DEAR3(1)             ===============================HOX2a_HOX2a   <---------ZAT2        <---------DREB2C(2)            <------ZmHOX2a(2)   ---------->DOF2          <---------At4g35610        --------->ETT(1)        --------->ALFIN1<----------DOF2<------ZmHOX2a(1)    --------->ZAT2 -----AHL20(2)      <---------SPL7  <---------MYB46(3)    <---------WRKY12  ---------->DOF2 ---------   tatggagttgtcggtgttggaccggaccaagaagatggtggatcaagagacttttataagtcaaaggatcgccaaagaaaaagagcagctgcagaagcta  24258900                        <---------LBD16                      --------->GLK1(2) <---------ANAC58                      --------->CCA1(2) <-------GAMYB ------ANAC55(2)      --------->ARR14(1)<---------ANAC58                                       ------ ----->O2            --------->ARR11(1)<------MYB83                                           ------- ------O2            <---------GLK1(2)<---------AtMYB61                              --------->ARR14(3) ------ANAC46        --------->ARR14(2)<------MYB46(1)                               --------->ARR11(3) ----->ANAC55(2)     <---------ARR14(2)<---------MYB46(3)                            <---------ARR11(3) ---TEIL    <---------ICU4            --------->MYB59                                <---------ARR14(2) --HSFC1(2)<---------YAB1        <---------TOE2(3)                      --------->YAB1 ------>ZmHOX2a(2) ->HSFC1(2)--------->ICU4        <---------TOE1(3)                      <---------ICU4<------ZmHOX2a(2) >ANAC58 --------->TOE2(3)--------->LBD16       ---------->DOF2       --------->ARR11(3)      <------ >ANAC58 --------->YAB1<-------TEIL--------->ATHB12          ------->TEIL            --------->ARR14(2)   cgtgatgagaaccataattctcagattcgggagttaatgtttggttgtctcaaaggggagacgaatgtgtataatcttgatggaagggatcttcaagatt  24259000                                                   ------>ZmHOX2a(1)                                                  --------->TOE2(3)                                                  --------------->AGL15                                                 ------>ZmHOX2a(2)                                                 ----------------->AGL1                                                 ----------------->AGL3                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                    --------->YAB1             <---------ARR14(2)                    --------->TOE2(3)          <---------ARR11(3)                  --------->ARR11(3)           --------->AGP1           --------->YAB1                      --------->ARR11(3)      --------->AHL20(1)                      <---------GLK1(1)      --------->ARR11(3)                <------ZmHOX2a(1)                                          <-      <---------AHL20(1)                ================HOX2a_HOX2a                                <-   --------->AHL20(2)                   ===============HOX2a_HOX2a               <-----------GT1   <- --->CCA1(2)      <---------ARR11(3)  <---------TOE1(2)                        <----------DOF2<------ -->ARR14(2)   <---------ANAC55(2)    <---------TOE2(2)        --------->At5g28300         ------>ZmHOX2a(1) ---ARR11(3)   --------->ANAC55(2) --------->ANAC46<---------YAB1             <---------ICU4  =======   tgagtttatatattgataagtatcttaatggtcttactcgcaggattgagatccttattgagaacggtgagtcttcttcatctttacctcttcctattgt  24259100  Previous    Next  AGI:  At1g65300.1    Description:  PHE2 (PHERES2); DNA binding / transcription factor. Identical to MADS-box transcription factor PHERES 2 (PHE2) [Arabidopsis Thaliana] (GB:Q7XJK8;GB:O80802); similar to PHE1 (PHERES1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G65330.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 24258592    to: 24259428    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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