Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                               ------       --------->AHL20(2)                                                        --------->ARR11(3)       --------->AHL20(1)                                                        <---------ARR11(3)       <---------AHL20(1)                              <---------ANAC58         <---------CCA1(1)       <---------AHL20(2)                              <---------ANAC46         --------->GLK1(1)      --------->AHL20(2)                               <---------ANAC58         <---------RVE1(1)   --------->YAB1                                     <-------TEIL              <---------GLK1(1)  <-------TEIL                                    <---------MYB46(3)           <---------ARR11(3) -------YAB1                                     <---------WOX13(1)            --------->ARR11(3) -----DOF2                    ------->TEIL    <---------YAB1     <---------MYB46(3)           <------   ttgattcattatattgtcccttagagtctgtgtatgtgtgtttggattttgatggatgcgtctgtgtttgttaattcaagagatatctactcgtgtatta  24239500                                                                       <---------TOE2(2)                                                                    <---------ANAC55(2)                                                                    --------->bZIP60(1)                                                                    <---------ANAC46                                                                    --------->ANAC55(2)   ---------->DOF2                                                 <---------TOE2(3) -----AHL20(2)       --------->YAB1                             <---------WOX13(1)    --------->ANAC58 --->YAB1     --------->ANAC58                                --------->ATHB12        --------->ANAC46 ---YAB1      --------->ANAC58                <-------GAMYB  <-------TEIL             --------->ANAC58   taagggaaagtctcccaagtcaataacaattctaaagtttacattgtgagttgggaaacatggttcattgacgtaagtttgcaaattccagcaactacat  24239600                                          <------MYB83                                          <---------ANAC46                                          <------MYB46(1)                                         --------->MYB55(2)                                         --------->MYB111(2)                                         <---------MYB46(3)                                      --------->ATHB12                                    <---------WOX13(1)                                  --------->ATHB12                                        --------->At5g28300                                  <---------ICU4                                      --------->MYB52(1)             <---------YAB1      --------->ICU4                                    <---------ICU4           --------->YAB1<---------ZAT14 <---------AtMYB61                         --------->YAB1          <---------ATHB12       <---------YAB1--------->ARR14(2)                 <-------TEIL         --------->ANAC58--------->ZAT14 --------->MYB46(2)             ----------->GT1--------->RAP2.6(3)         --------->ANAC58<---------ZAT18 --------->MYB111(1)          <---------ZAT14----------->TGA1        --------->WOX13(1) --------->GLK1(1)   <---------ARR14(2)     ---------->DOF2----------->HVH21   atgaacaatgcaatcaatattgaactgtgaactccatgattgtttggtggatttggacattcacatctatactaaagtgaaacattcatgacggtaaact  24239700                                                                  <----------DOF2             <---------ANAC58                                   <---------ZAT2             <---------ANAC58                           --------->ATHB12           --------->ARR14(2)                          <---------YAB1           --------->ARR11(3)                      <---------ARR11(3)                           <----           <---------ARR14(2)                    <---------YAB1 --------->ZAT2                -------           <---------ARR11(3)                  --------->YAB1   --------->At4g35610           <------           ------->TEIL <---------TOE2(3)      <---------ICU4   <---------At4g35610      ------>ZmHOX2a(2)          <---------CCA1(2)           <---------YAB1 ------>ZmHOX2a(2)  <----------DOF2--------->ARR11(3)      --------->At4g35610         <---------GLK1(2)--------->ARR11(3) ---------->ID1   <---------ARR11(3)      <---------At4g35610     ---------->DOF2 --------->ICU4<-----------HVH21    <---------GLK1(1)   tctcttggagctgtatcttgcatattaagaatcaaagaatatcagtgaattatgatcttcattgtcagctttgtcttttcaagagttctgatcttcagct  24239800                                                                                      ----------->GT1         <---------ANAC58<---------AHL20(2)                                  <------ZmHOX2a(1)         <---------ANAC58<---------AHL20(1)                                <---------TOE1(2)      <-----------GT1    --------->AHL20(2)                                <---------TOE2(2) ------DOF2<---------MYB52(1)         <---------YAB1                     <---------SPL7 -->At4g35610            --------->AHL20(1)                             <---------ANAC46 ---At4g35610           <---------ATHB12      ------------>CBF  --------->AtMYB61   ---------->DOF2   ttgagtaatttccgttttcaattccaataaaatatgttttatgaaaaaatcaatgttattcatcgaccaaaacgacgtaggatagagaaagaaaaatggg  24239900                                              ---------->DOF2                                         --------->ANAC58                                         <----------ID1                     *TSS                --------->ANAC58                  --------->LBD16        --------->ANAC46                  --------->HSFB2a(2)  <---------ATHB12             --------->ATERF1(1)       ---------->DOF2         --------->REM1(2)        ------>ZmHOX2a(1)            <------ZmHOX2a(1)                 ----   aacaacatccgagtagcctccgagaccacaaacatcctccaataagccaaaagaagacgagagaaggagaagagtcgaaatcgccattgaaatggctctc  24240000                   <---------KAN4(1)                  <---------KAN4(2)                 <---------GLK1(2)               --------->LBD16             <---------LBD16         <-----------HVH21      ----------->RAV1(2)    ------>ZmHOX2a(1)      <---------At4g35610   <---------ALFIN1                                                 <-------    <---------ALFIN1--------->KAN4(2)                                                     --------->ARR14(2)    --------->REM1(1)<-----------GT1                                                      <---------ARR14(2)  <-----------HVH21--------->KAN4(1)            <<<<<<<<<TBF1                             <---------GLK1(2) ------>DOF2--------->MYB52(1)        ------>ZmHOX2a(1)                                  <------ZmHOX2a(1)   aaagcttcacctgttaccggattattccctcctctccgtcctactgcttcttcttccccttcgacttcttctaatcgcccttgttccctcaggattctcc  24240100                              <---------ANAC58                    <---------DAG2                              <---------ANAC58                    <----------DOF2           <--------                             <-------TEIL                       ---------->ID1       <---------ANAC58                  --------->At5g28300                       --------->ALFIN1         <---------ANAC58                 --------->HSFB2a(2) ------>ZmHOX2a(1)   <---------TOE1(3)          <---------STY1(2)          <----------DOF2   --------->ALFIN1             <---------TOE2(3)          --------->STY1(2)       --------->ARR11(3) <---------TGA1a            <----------DOF2                --------->ZAT2       <---------ARR11(3) ======================================bZIP_DOF       <-----------GT1 ----GT1  ==========================bZIP_DOF         <---------DAG2  <---------ARR11(3)   ------>NtERF2   ctctcagaacatctttcttcggtaactcaagtgcgtctccttcttctctacttcgctttagggtttggctttatcttcatttcactagcttgcgccttgt  24240200                                                 --------->ATHB12                                              <---------O2                                              ----------->GT1                                              <---------ANAC58                                              <---------ANAC46                                              <---------ANAC55(2)                                              <---------ANAC55(1)                              <-----                                              --------->ANAC55(2)                       <---------ANAC58                                 --------------->AGL15                                  <---------ANAC58            <------ZmHOX2a(1)    <---------------AGL15                                 --------->ATHB12     <---------ANAC46           =====================================================================     <---------AtLEC2   <---------At4g35610   <---------ANAC58                        <---------YAB1     <---------ANAC58--------->ZAT14        <---------DOF5.7(2)                  <---------ANAC58     <---------ANAC58--------->ZAT18     <---------ANAC58                        <---------ANAC46    --------->ATHB12 <---------ZAT18     <---------ANAC58                        <---------ANAC58  <---------WOX13(1) <---------ZAT14    --------->MYB59                         --------->MYB59<----- -ANAC46   ----------->GT1      <-----------------AG                   ----------->GT1--------->ICU4   ttggattgcttggaggaaaatagtgcagctatttgctcaaattgggtaacgtgattagtcagagagagaattgaagtaaaattgggtattgattgtgctt  24240300                                                <---------ARR14(2)                                       <---------YAB1                                   ----------->GT1                                           <-------                              --------->ATHB12  --------->ARR14(2)                         <---------       --------->ATHB12     --------------->AGL15                                   --------->WRKY45      <---------YAB1        <---------------AGL15                                   --------->WRKY38(1) -----DOF2                 <---------ANAC58   ----------->GT1                       ----------->HVH21 ===========================================MADS_MADS                               --------->WRKY12 ----DAG2    ---------->ID1<---------ANAC58  <---------TOE2(3)                    <----------DOF2   tttagtgtatgatttgtcgattttgtgtttcttgatttagtataaatgaggttactcttagtcagtgtctataacttcagtatgctttgactgtttcaca  24240400  Previous    Next  AGI:  At1g65250.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G65190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68783.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 24238001    to: 24239471    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g65260.1    Description:  PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4). Identical to Probable membrane-associated 30 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O80796); similar to unnamed protein product [Vitis vinifera] (GB:CAO22942.1); similar to Os01g0895100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045073.1); contains InterPro domain PspA/IM30 (InterPro:IPR007157) Range:  from: 24239921    to: 24244368    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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