Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ALFIN1                                                                        ------>ZmHOX2a(1)                                                                    --------->ARR11(3)                                                                    <---------ARR11(3)                                                                    <---------ARR14(2)                                                     <---------ANAC58 ------>ZmHOX2a(2)                                                     <---------ANAC58<------ZmHOX2a(2)                                                  <----------DOF2   --------->ARR14(2)                                         <----------DOF2         --------->HSFB2a(2)                    --------->YAB1      <---------ANAC58         <---------HSFB2a(2)      <---------YAB1               --------->ZAT14          <---------ANAC58        <---------LBD16      ---------->DOF2   tcagcaattctcgactctgcaatcttgatcacagacaccattgctttctgttctttcttggtgaattctggatcctgcacattcactgaaagatgataca  24226100                                                                                  --------->DEAR3(1)                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                <---------RAP2.6(3)                                                                               --------->RAP2.6(2)                                                                               --------->RAP2.3(2)                                                                               >>>>>>>>>AtERF-4                      <---------GLK1(1)                                        --------->RAP2.3(3)                      --------->GLK1(1)                                        >>>>>>>>>AtERF-1               <---------ZAT18                      <---------MYB52(1)         --------->ANAC46               --------->ZAT18                 --------->ARR14(2)              >>>>>>>>>AtERF-2              <---------ANAC58                 ------->TEIL                    >>>>>>>>>AtERF-3              <---------ANAC58    --------->ANAC46<-----------RAV1(1)          >>>>>>>>>AtERF-5 <----          <----------DOF2<---------ANAC46      --------->GLK1(2)               --------->DEAR3(1)         <---------ANAC58<---------ANAC58      <---------ARR14(2)             --------->RAP2.3(1)  <-         <---------ANAC58<---------ANAC58     <---------GLK1(2)     ----------->GT1     ----------->HVH21    <----------DOF2  <---------GLK1(2)  ----------->HVH21  ---------->DOF2    --------->ERF1---------   aagtttcttttgctttgcgcacagatttcttgtaatacaccactgactgaatctgttgtgccaaagtgaagagtgaaatagccgccatcgatgacaaagc  24226200                                    --------->ANAC58                                     <-----------GT1                                    --------->ANAC58                                  --------->CCA1(2)                                    --------->ANAC46                                 <---------ARR11(3)                                --------->ANAC58              <---------MYB52(1) ---------->DOF2                                --------->ANAC58      <---------ZAT18          ------>ZmHOX2a(1)           --------->ANAC58 ------>MYB46(1)           <---------ZAT14         --------->TOE2(3)           --------->ANAC58 ------>MYB83              --------->ZAT14     <---------At4g35610       < -------RAV1(2)          --------->ANAC58  <-----------HVH21  XXXXXXXXXXXXXXXXXXXX>MIR4239          - -----ZmHOX2a(1)         --------->ANAC58 <----------DOF2 --------------------->WRI1 --------->ARR11(1) ->DOF2 --------->ARR14(2)--------->MYB46(3)   --------->ANAC46           <---------ZAT2----------->HVH21   aggagctatggaaacgcattgtacagaacccaacaagtaagcaactttcacatcagtgttctctgtttttttcgctagctccttaaagatttgaccttgt  24226300                                         <---------ARR14(2)                                         --------->ARR14(2)                                         <---------ARR11(1)                                         <---------ARR11(3)                                         --------->ARR11(3)                                        <---------CCA1(2)                                           <                               --------->ANAC58                                                     <                    <---------SPL7      --------->GLK1(1)                                           -                   <---------ANAC58 --------->ANAC58                                                -           <---------ALFIN1    --------->ANAC58   <---------ICU4                                   --           --------->ANAC46    --------->ANAC46   --------->YAB1                                   --         --------->ANAC46--------------------->WRI1--------->ARR11(3)                         <------ ---------ZAT18    <---------ANAC58 --------->ANAC58       --------->ANAC58            <------ZmHOX2a(1) -------->ZAT18  <-----------HVH21  --------->ANAC46       --------->ANAC58     ---------->DOF2   <--   agtgcattaacacacaccctgtcgttcccttggacgaaacgcaaatcttcaattatctccaacgccttgatgtaatctttcgcaaagtaggaatcgtagg  24226400                                                                                                    <                                                                                                    <          <---------GLK1(2)                                                                         <          --------->ARR11(3)                                                                    =====         <---------RVE1(1)                                                                      <----        ----------->ARR10                                                                      <----- -------MYC2                                                                                   ------ -------MYC3                                    <-----------RAV1(1)                          <------- ------>MYC2                             --------->ANAC58                                    -------- ------>MYC3                             --------->ANAC58                                 ------>ZmHOX2a(2) ------->ANAC58                         <---------ZAT18                                  --------->At4g35610 ------->ANAC58                <---------HSFB2a(2)   <---------HSFB2a(2)               <---------ZAT14 ---TOE1(2)         <---------MYB52(1) <------ZmHOX2a(1)                               --------->ZAT14 -----TEIL<---------ARR11(3)   --------->HSFB2a(2)  <---------LBD16       <-----------GT1<---------At4g35610   cacgtttgaagagattttcgctgttagcatcttctagagtaggacgctccatgttggggaagagagtagaagctagtaacgcttctcagtgatctgatct  24226500                                                                                                   --                                                                                                 ----                                     ----------->GT1      ----------->GT1                        <---                                   <---------O2           >>>>>>>>>>E2Fe                        -----      <---------ANAC58             <---------TGA1a        >>>>>>>>>>E2Fc                        <----      <---------ANAC58             <---------ANAC46       >>>>>>>>>>E2Fa                        ----- ---------ANAC46                   ============================bZIP_DOF                         ----- ---------ANAC58                   --------->O2           >>>>>>>>>>E2Fd                        ===== ---------ANAC58                   --------->TGA1a       --------->LBD16                        ===== ============================================bZIP_DOF    ----------->GT1                  <---------ARR11(3) ------DOF2                     ----------->HVH21       <---------ANAC46        <------------CBF<---- ----ICU4                       ----------->TGA1       <-----------------------TaNAC69(2) --------->ARR11(3) >ZmHOX2a(2)                  <---------ANAC58        --------->GLK1(2)       --------->ARR11(3)----- --ARR11(3)                   --------->MYB52(2)    ---------->DOF2         --------->MYB59 <-------- ->ARR11(3)                   <---------ANAC58    <------ZmHOX2a(1)         <---------TOE2(3)  ------   ttgcgttttcttggtatcgagagaggttttgttcgtgacgggagaaaacagaggagaagcgggaaaaaatcaacgagtaaggtattgaagaagatgtcac  24226600        ------->MYC3        <-------MYC3        <-------PIF5        ------->MYC2        ------->PIF5        <-----------HVH21        <-------MYC2       --------->ANAC46       --------->ANAC58       <---------TGA1a       <---------ANAC55(2)       --------->bZIP60(2)       --------->ANAC58       --------->ANAC55(2)       --------->O2       --------->TGA1a       =======================bZIP_DOF       <---------O2     <---------ALFIN1     ------------->DYT1  --------->ANAC46  --------->ANAC58  --------->ANAC58 ------->SPL7 ----->TOE1(2) ------SPL7 ---->ANAC55(2)                                               <---------ANAC46 -----ANAC55(2)                                           --------->REM1(2) ---->ANAC58                                             --------->ALFIN1                         --- ---->TGA1a                                             --------->LBD16                           --- =============================bZIP_DOF                 <---------ANAC46                  <----------- ================bZIP_bZIP                             <---------ANAC58                --------->AHL20(2) -----TGA1a                    <---------ANAC46      ------>ZmHOX2a(1)                 <---------AHL20(2) ---->ANAC58    <---------ARR11(3)      ----------->RAV1(2)--------->ALFIN1           --------->AHL20(2) ---HVH21----------->HVH21 <------------CBF --------->ALFIN1  ----------->GT1    --------->HSFB2a(2) --------->AtSPL3  <----------DOF2    <---------ALFIN1 <---------ANAC58      <----------DOF2    -----   gtacgagccacgtgacagggtctttgtggaattgtgtcgaacacctgtgggcatcctccgtgtggagtaaatgacatagctttctcgatttaattggacc  24226700                                                            <---------ANAC46                                                       ----------->GT1                                                     --------->REM1(2)                                                     --------->ZAT14    ----------->GT1             ---------->DOF2      <---------ZAT14  --------->LBD16    ----------->GT1            <---------ANAC58 --->MYB46(1)      <---------ZAT14              <---------ANAC46 --->MYB83         --------->ZAT14              <---------ANAC58<---------YAB1             <------ZmHOX2a(2) -CBF             ----------->GT1 --------->ANAC58  --------->ALFIN1               --------->ATHB12 - ---->AtMYB61     --------->ALFIN1--------->ANAC58<---------ANAC46                <---------YAB1   <-   ttcccagagtaaatttgggagtgtagaaaaatagaaaagcattcaaatttgggtgtgtagtgacttataagtggaattgtgttcatgtttgggatcaaat  24226800                                                                         --------->ATHB12                                      ----------->GT1                   <---------YAB1              -                                     --------->DAG2                    <---------GLK1(2)           <-              <----------DOF2  ----------->RAV1(1)                   --------->ICU4           <------ -------->WRKY18(1)     ---------->DOF2   ---------->DOF2     ---------->DOF2             <---------MYB46(3) ----------HVH21<---------AtMYB61 ------->GAMYB   ---------->DOF2  ---------->DOF2     <-----------RAV1(1)   tggtcatcccaataggctttggttttgaaagagcaacagaaggtgaaagcttcaaaggtatgtcaaaagaaaagattattggaacggtattgtgggtcgg  24226900                            --------------->AGL15                            <---------------AGL15                            <----------DOF2                           <---------ANAC58                        <---------MYB52(1)                        <--------P                       <-------GAMYB                    --------->SPL7                    <-------TEIL                   ------------>AtMYB77                                        <------MYB46(1)                  --------->ARR14(2)                                           <------MYB83        <---------ARR14(2) <---------ANAC46                                   <---------AtMYB61        --------->ARR14(2) <---------ANAC58                                   --------->MYB59<-------  <-------GAMYB   <---------SPL7                                              xxxxxxxxxxxxxxxxxxxxxxx <------MYB83 <------ZmHOX2a(2)                                             <---------MYB52(1)------>ZmHOX2a(2) <------MYB46(1)  <---------ARR14(2)                                 --------->ARR11(3)     <-------- ----------->GT1<---------------AtSPL3                               --------->AHL20(1)     <-------- -------->MYB59------>ZmHOX2a(2)                                     <---------AHL20(1)    <---------CCA1(2) ------TEIL  <---------ARR14(2)                                      <---------AHL20(2)<---------MYB52(1) ---ANAC46   --------->ARR14(2)                          ----------->GT1  <---------MYB46(3)---------   gttcggttaaaatccgatcgggtacggttgctttaagtagagaagtttaagagctaagaaggtaaaactaaaatattggttaggtttcggtttggatctc  24227000  Previous    Next  AGI:  At1g65200.1    Description:  ubiquitin carboxyl-terminal hydrolase-related. similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65130.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65120.2); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT2G27630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62486.1); similar to Os03g0165600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049069.1); contains InterPro domain Protein of unknown function DUF627 (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-termina Range:  from: 24222133    to: 24226452    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version