Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                            <---------ATHB12     <-----------GT1                  ---                                            --------->MYB46(3)  ----------->HVH21                 <--                                           ------>MYB46(1)  <---------ANAC58                     <---           ----------->HVH21               --------->ANAC46 <---------ANAC58                     <---          --------->At5g28300  --------->ANAC58           --------->ARR11(3)                     <---    <---------WOX13(1)<-----------GT1      -------->P ---------->DOF2                   XXXXXXXXXXXXX  --------->ATHB12 <---------CCA1(1)       ------>MYB83--------->DAG2     --------->MYB46(3)     <--- <---------YAB1   <---------ARR11(3)    --------->MYB46(3)<---------ARR11(3)        ------->TEIL<---- ---->ZAT6<-----------HVH21    --------->ANAC58  --------->AHL20(2)    --------->MYB46(3)   <--------   accatgatagaccgtgactggatatttcaactcaagacaacatccaaccaatttcataaagttcttgtgaccactcaccatcgatgaaactgctatgttg  24220600          ==================================HOX2a_HOX2a          ------>ZmHOX2a(2)         ===================================HOX2a_HOX2a         <---------GLK1(1)         <------ZmHOX2a(2)         --------->GLK1(1)        <---------ARR14(2)        --------->ARR14(2)        <---------ARR11(3)        --------->ARR11(3)        <-----------ARR10        <---------AGP1        <---------ARR14(3)        --------->ARR14(3)  --------->ANAC58  --------->ANAC58                                     <---------HSFB2a(1) -----NtERF2                                           <---------HSFC1(2) ------>LBD16                                          <------MYB83 -------RAP2.3(1)                                      <------MYB46(1) ------ANAC58                                          <---------MYB46(3) ------RAP2.3(2)                                       --------->HSFB2a(1) ------RAP2.6(2)             <-----------ARR10         --------->HSFC1(2) XXXXXXX>MIR779.1           <---------GLK1(2)   --------->TOE1(2)                     --------->At5g28300 ------ANAC58       <---------ALFIN1 ------>ZmHOX2a(1)<---------AtMYB61      <---------YAB1 -----LBD16   ------>ZmHOX2a(1) <----------DOF2--------->YAB1         --------->TOE2(3)            -- ---RAV1(1)  <---------ALFIN1--------->GLK1(2)<---------YAB1        -------->P       ----------->GT1   cggcacacaagatctcctcccctcacattagaatctttcctgatgagtatcatgggatggttctcgttcttacctgaataccattggcagtaaaattctt  24220700                                             <------ZmHOX2a(2)                                             <---------GLK1(1)                                             --------->GLK1(1)                                            <---------AGP1                                            <---------ARR11(3)                                            <---------ARR14(2)                                            --------->ARR11(3)                                            --------->ARR14(2)                                            <-----------ARR10                                           <---------ARR14(1)                                          --------->LBD16                                         <---------ANAC46                                         <---------ANAC58                                         <---------ANAC58                                     <----------DOF2                                   <------NtERF2                               <---------MYB46(3)                               --------->MYB52(2)                               <------MYB83<---------CCA1(2)                               <------MYB46(1)                              <---------AtMYB61   --------->At4g35610                       <--------                           <-----------RAV1(1)------>ZmHOX2a(2)                <---------GLK1(1)                    <---------ANAC46<---------ANAC58 <---------At4g35610      <---------ARR14(2)                   --------->At4g35610  <---------LBD16        --------->GLK1(2)          -----------                  <---------MYB46(3)<---------ANAC58 --------->ZAT2           --------->ARR14(2) ---->ZmHOX2a(1) --------->ALFIN1<---------RAP2.6(2) --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)   cctgatgaacaagattagagtggctgaaaatgttggtggctttgcggatctcatcagcagagaagaatttgatgggattggatttgccatcgcaacattc  24220800                                                                             <---------CCA1(2)                                                                        ------>MYB83                                                                        ------>MYB46(1)                                                                        -------->P                                                                      --------->MYB46(3)                                                                      --------->AtMYB61                                                                      ------->GAMYB                                                                      <---------MYB111(1)                                                                     <---------MYB55(2)                                                                     --------->MYB46(3)                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                  --------->MYB46(3)                                                                <---------ALFIN1      --------->TOE2(3)                                                 <----------DOF2--------->ANAC46      --------->TOE1(3) -HSFB2a(1)             ------>ZmHOX2a(1)  <---------YAB1     ------>ZmHOX2a(1)       <---------MYB59 >RAV1(1)   --------->MYB46(3)         <---------GLK1(2)<<<<<<<<<TBF1<---------MYB52(2)   gatgagctcttctaacaacttggctcctctctccaattctagcttcttattctttttcttcttcctccacaaccaacccatctctaaacctaaactgttt  24220900                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)    --------->ANAC58                               <----------DOF2              <---------ARR14(2)             *TSS                     ---------->DOF2                        --------->ARR14(2)             --------->ANAC58      <---------MYB52(1) ---------->DOF2           <---------At4g35610       --------->MYB52(1)  ---- <-----------GT1   <---------YAB1                  --------->At4g35610--------->GLK1(1)    --------->ANAC46   ttttttctgttttttttttttataaaagaaagactttagttttaaatcaaatgagcagagagtattttcaagaactccataacgagtttgcaaacgaaat  24221000                        --------->ANAC58                   <---------TOE1(3)                   <---------TOE2(3)                           --------->LBD16            <---------GLK1(2)                                 --------->LBD16            --------->ARR11(3)                               <---------LBD16             <-----------          ----------->ARR10  <---------GLK1(2)        <---------ANAC58                 <---------AHL20(2)     <---------YAB1--------------->AtSPL8             <---------ANAC58                 <---------YAB1     <---------TOE2(3)  --------->ANAC58              --------->bZIP60(1)             <---------AHL20(2) --------->YAB1    <---------------AtSPL8        <------------CBF                     --------->AHL20(2) ------->GT1<---------ARR11(3)             <-----------GT1 ------>ZmHOX2a(1)    <-----------GT1   <--   ggataataagattagatttttaaggtactcaaattcttgttgaattttcaacattgacgtcctcccgcgaaaattcagaaataaacattttaattgtttt  24221100                                         ------>ZmHOX2a(2)                                   <-------                                       --------->ARR11(3)                                    --------                              <---------ARR11(3)                                             <-------                              <---------ARR14(2)                                            ---------                              --------->ARR14(2)                                            ---------                              --------->ARR11(3)                                        --------->AHL20(2)                             <---------CCA1(2)                                          <---------AHL20(2)                           --------->ANAC55(2)                                     <---------AHL20(2)                  <------ZmHOX2a(1)    <---------ARR11(3)                      <---------AHL20(2)   < -CBF    <---------ZAT6    <---------ANAC55(2)                         <XXXXXXXXXXXXXXXXXXXXMIR837-3P -------LBD16     ==============================HOX2a_HOX2a    <---------ICU4 <---------AHL20(2)<----   tgtggaatttagagttggaaggatttatcacatatcttggtgatctctacgattttggggtctactcatgtcatcagttttttatttttttttaatatct  24221200                                                                                    --------->GLK1(2)                                                                                   <---------GLK1(2)        --------->MYB52(2)                                                       <---------YAB1  <---------ANAC58                                                               <---------TOE1(3)  <---------ANAC58                                                               ----------->ARR10 --ARR11(3)            ------>ZmHOX2a(1)              <------ZmHOX2a(2) <---------AHL20(2) ->ARR11(3)      --------->HSFB2a(1)                 <---------ARR11(3) --------->AHL20(1) --AHL20(1)      --------->HSFC1(2)                  --------->ARR11(3) --------->AHL20(2) >CCA1(1)        <---------HSFB2a(1)      --------->ZAT2               <---------AHL20(2) >RVE1(1)     <---------SPL7              --------->At4g35610          --------->AHL20(2) -----------GT1--------->MYB52(1)         <---------At4g35610       --------->AHL20(2)              < ------DOF2  <---------MYB52(2)           <---------ZAT2 --------->At4g35610     <---------TOE2(3)  <   ttttacttgttagtgacgaacggtcctcaagaattcaaacactcggctggaattagatcatctaaatgtataaattaattgttaagattctttcaatgct  24221300                                              --------->ANAC46                                    <--                                     <---------AHL20(2)                                           <--                                    --------->AHL20(2)                   <----------DOF2 <---------ANAC58                                    <---------AHL20(1)      --------->ANAC46             <---------ANAC58                                    <---------AHL20(2)      --------->ANAC58    <-----------GT1   ---            --------->AtLEC2   <---------ATHB12             --------->ANAC58  --------->YAB1    ----- ---------DAG2               --------->WOX13(1)       <-------TEIL    ---------->ID1     <---------ANAC46 ----------DOF2          ----------->GT1  <-----------GT1 <---------ALFIN1   <---------YAB1     -----   agcttttccaagttatgcaaaattgttcagtaaatcaattttttttacaccctaaattcatcaccccaatttgttctttattataccacttccttgtaaa  24221400                                                                                 <---------At4g35610   --------->ZAT6                                                        <----------DOF2 -------ARR11(3)                                                  --------->HSFB2a(2) -------GLK1(2)                                                   <---------HSFB2a(2) ------>ARR11(3)                                      <----------DOF2 --------->ANAC58     <---------ARR14(2) ------>ARR10            <-----------HVH21        <---------GLK1(2)   --------->ANAC58     --------->ARR14(2) ---->ICU4    ---------->DOF2               <----------DOF2  <---------At4g35610 --------->At4g35610   gattttcactaaaaactaaagaatttttgtcacaagttgtctatagctttcaaattctttgagagcttctacaagcttttgagagcttcccaaaattcgc  24221500  Previous    Next  AGI:  At1g65190.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G65250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68783.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 24219307    to: 24220991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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