Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <------ZmHOX2a(1)                <----------ID1     <---------ICU4 ------>ZmHOX2a(1)         <---------ANAC58 --------->RAV1(2)  ----------->RAV1(1)          <---------ZAT14 >MYB46(1)    --------->DAG2    --------------->AGL15                                            ---- >MYB83 <-----------GT1    <---------ANAC58      --------->ZAT14 <----------DOF2       <----------DOF2 >MYB46(3)   ---------->DOF2    <---------------AGL15---------->DOF2     ----------->GT1     --------   ctcctgatttttacaaaaaggacaacatttcttacttatatatgtatacagtgaagaaagatgggaactttagtgaagaaaaatgtgaactttagcaaag  24209000                                                                                              <------                                                                                            ---------                                                                                          --------->ZAT14                                                                                        <---------ZAT18                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                       <---------ANAC46      --------->ARR11(3)                                                       --------->MYB52(1)      <---------ARR11(3)       <----------DOF2                           <------ZmHOX2a(2)<---------ZAT14 ------>DOF2     ----------->GT1           ---------->DOF2              <---------ARR11(3)<---------ZAT18 -->DOF2 <----------DOF2       <---------DAG2       --------->ARR11(3)  --------->ARR11(3)--------->ZAT18   aaagatgagaactttagtgaagaaaaatgtgaactttttagcgaagaaagatgagaacttgaagtatagaacaagatcacataccagttgtgtgcaccag  24209100                                                                                                    -                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                           <---------HSFB2a(2)   <---                                                                           --------->HSFB2a(2)   <---                                                                   <---------ARR14(2)            ----          <---------ZAT18              ---------->DOF2             --------->ARR14(2)            ----          --------->ZAT18        <---------ZAT2                   <------ZmHOX2a(1)             <----       --------->ALFIN1          <---------At4g35610              <---------HSFB2a(1)       ---------  ---------->DOF2                --------->ZAT2                   --------->HSFB2a(1)       <-------- -----RAV1(2)                    --------->At4g35610       <------ZmHOX2a(1)            <---------ALFIN1 -->RAV1(1)               <---------MYB52(1) ----------->HVH21 <------ZmHOX2a(1)        --------->ZAT6   aagagaaaggaggggactcgtatttctcgttagcaagctgagaaagtctgacaagagtagaggaaggaggattccttctccaagtcttcaacactgcagg  24209200   --------->ANAC58   --------->ANAC58 ---------->HVH21 ---->ZmHOX2a(2)                                                               ------>ZmHOX2a(2) ------>At4g35610                                                             <------ZmHOX2a(2) ----ZmHOX2a(2)                                                              --------->ARR11(3) -------At4g35610                                                            >>>>>>>>>GATA-1 ------ARR14(2)                                                              >>>>>>>>>GATA-3 ----->ARR14(2)                                          <---------GLK1(1)   <---------ARR11(3) ------AGP1                                              --------->GLK1(1)   >>>>>>>>>GATA-4 --------ARR10                                   <---------AHL20(2)          --------->AGP1 ------ARR11(3)                                <---------RVE1(1)            --------->GLK1(1) ----->ARR11(3)           --------->ANAC46     <---------CCA1(1)       ------->GAMYB             <--- ----->GLK1(2)           --------->ZAT14      --------->ARR11(3)    ----------->RAV1(1)          <--- --ZmHOX2a(1)            <---------ZAT14      <---------GLK1(2)     --------->MYB52(1)       <------- >ZAT14              <-----------GT1          <---------ARR11(3) --------->ANAC46           <-------- -ZAT14     ------->TEIL <---------REM1(2)  ----------->ARR10 --------->LBD16>>>>>>>>>GATA-2<--------   atctgacgcatttgaacccattttctctacacaacttacacaagagaagatttttttagaattccccaaacaacagagagatctatagaaatttgtgtgc  24209300                                                                                          <----------                                                                                          <----------                                                                                         --------->ANAC46                                                          <---------ANAC46         --------->GLK1(1)                                                        <---------WRKY18(1)    --------->ANAC46                                                        --------->MYB52(1)     --------->ANAC55(2) -------DOF2                                           ----------->HVH21     <---------WRKY18(1) ------DAG2                          ---------->DOF2 --------->TOE1(3)       --------->MYB52(1) --ZAT18                      --------->TOE1(3)      --------->TOE2(3)      --------->WRKY12<-------- -ANAC58                  ---------->DOF2          ------->TEIL             ----------->HVH21     --- -ANAC58        ---------->DOF2  ---------->DOF2<---------MYB52(2) ---------->DOF2 <---------GLK1(1)   tttattctcttaagagactaaagaagttgaaagcttaaagaaagaaatcgacgaaccttgacggagatggaaagagccttgacggaattctgcgtcacct  24209400                                                   <---------MYB52(2)                                               <-----------HVH21                                   <-                                               <-----------TGA1     --------->ARR11(3)   <---------AHL20(2)                                          <---------HSFC1(2)        <---------ARR11(3) <---------YAB1   ---------->DOF2                      <---------GLK1(2)--------->ANAC58              <---------AHL20(2) -TGA1                           ----------------------->TaNAC69(2) <---------GLK1(2)<---------CCA1(1) -HVH21                        <----------DOF2--------->ANAC46     <---------RVE1(1)--------->ARR11(3) -ALFIN1            --------->DAG2    *TSS<---------HSFB2a(1)     ----------->ARR10 <---------ARR11(3) ------->DOF2      ---------->DOF2  <---------TOE2(3)    --------->ANAC58          <<<<<<<<<RAP2.2 --   tgaagcaaagagagagattgaaaaaggagagagcttttaagggattcttcgtcactaacaagtaagaagagattttctagggtttagatattattttcat  24209500                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                    <---------TOE2(3)                                                      <---------At4g35610                         ---             --------->CCA1(2)                     <---------At4g35610                            <--            <----------ID1            <---------AHL20(2)            <---------TOE1(3)             <--        ---------->DOF2     <---------ZAT2   <---------At4g35610   <---------DOF5.7(2)          <----  ------->GAMYB           <------NtERF2    <-----------GT1        --------->WRKY12              <---- ----------GT1 --------->REM1(1)     <---------AHL20(2)          --------->DOF5.7(2)  --------->DAG2 ------->MYB52(1)        <---------LBD16<---------YAB1--------->At4g35610            ---------->DOF2   ataacgggcctaaagctacaagactggcccggctcgttttttattttagcttcttctgcttcaaaacgttgacgtttcaatctccaaaaaagtgttttaa  24209600                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                            <------ZmHOX2a(2)                                                                                           --------->ARR11(3)                                                                                     <-------MYC3                                                                                     ------->MYC3                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC46                                                                                    <---------ANAC55(2)                                                                                    =================   --------->YAB1                                                           <---------AHL20(1) ------  <---------YAB1                                                            --------->AHL20(1) <----- ------>ARR11(3)                                                      --------->TOE2(3)   <------ZmHOX2a(1) -------GLK1(2)--------->HSFB2a(2)                              ------------>CBF    <---------TGA1a -------ARR11(3)                       ---------->DOF2        --------->ZAT18       --------->TGA1a -----TOE1(3)  <---------HSFB2a(2)<---------YAB1              <---------ZAT18       --------->O2 -----TOE2(3)------->TEIL      --------->ICU4<-------TEIL    <---------ANAC46       <---------O2   gattttgataatatgtactcgaagagctatgtaatgttgattaaagcttcataacaatttttggcgcacaattcttaatatatatcacgtgaggatcacg  24209700          ------->GAMYB       --------->MYB52(1)     <---------MYB52(2) --->ANAC58 --->ANAC58                                                                                       <-- --->ANAC55(1)                                                                                    --- --->ANAC55(2)                                 <---------AtMYB61            <----------DOF2     <---- =================MYC_MYB                    <----------DOF2      ---------->ID1       <---------MYB52(1) --->ANAC46                     ------>ZmHOX2a(1)              <---------DAG2        <---------ANAC46 ----ANAC55(2)     --------->ZAT6           <---------DAG2     <----------DOF2     ------>NtERF2-----   taaacaaactaacagactctaaccctattaagtcctcgcctaatcgcctttggtcttctcttcaacttttcccattttctttctctgccgtttattttct  24209800                                                                                          --------->WOX13(1)                       <------------CBF                                                  ------>ZmHOX2a(2)                    >>>>>>>>>>>>>>>>>LFY                                                <------ZmHOX2a(2)                 --------->ARR14(2)         --------->ARR11(3)                         <---------ARR14(2)                 --------->ARR11(3)         <---------ARR14(2)                         ------->TEIL            ----------->GT1                 --------->GLK1(2)                          --------->ARR14(2)          ---------->DOF2                   <---------ARR11(3)               <------------CBF -------HSFB2a(2)--------->GLK1(2)          --------->ARR14(2)              --------->ATHB12 ------>HSFB2a(2)<---------ARR14(2)       ----------->ARR10                <---------ATHB12         < -----HSFB2a(2)  <-----------ARR10 <---------ANAC58    ---------->DOF2     <---------YAB1<-------TEIL ---->HSFB2a(2)  <---------ARR11(3)<---------ANAC58---------->DOF2         <------ZmHOX2a(2) --------   cgagaaaactcagaaagaaaatctccattgttgtttttcttgggaaaatctgccaaagaaagaaggttttgccttcgatcattgagatggatccatcaaa  24209900  Previous    Next  AGI:  At1g65150.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G65050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63998.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 24207504    to: 24209438    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65160.1    Description:  ubiquitin carboxyl-terminal hydrolase family protein. similar to ubiquitin thiolesterase [Arabidopsis thaliana] (TAIR:AT1G65140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62486.1); similar to Os03g0165600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049069.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 24209887    to: 24211401    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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