Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------At4g35610          --------->ALFIN1 <---------HSFC1(1) --------->HSFB2a(2)<---------HSFB2a(2) <---------HSFB2a(2)--------->HSFB2a(2)                                                  --------->YAB1 ----ANAC58       --------->At4g35610                                                 --------->GLK1(1) ----ANAC58    <------NtERF2                            --------->DAG2                <---------GLK1(1) ->ARR11(3)  --------->ETT(1)               <----------DOF2                     --------->MYB52(1) --ARR11(3) --------->RAP2.6(3)    ------>ZmHOX2a(1)   ---------->DOF2      --------->YAB1   --------   tgtctagaagcagtgtcggcatctggaattcgaagtcctacataagcttttccaccataaagtttctcaagtctgcaataacaaatggaaatcagaatca  24160000                                                                                                 <---                                                                                             <-------                                                 --------->TOE1(2)                          <--------                                               --------->GLK1(2)                            <--------                                           <---------HSFB2a(2)                              ---------                                          <---------LBD16                                   ---------                                        --------->GLK1(2)                            <---------HSFB2a(1)                                        <---------ARR14(2)  ------->GAMYB     --------------------->WRI1                                        --------->ARR14(2)  =========================================                  ----------->GT1  ----------->GT1       --------->MYB52(1)  <---------ARR14(2)<-----        <---------GLK1(1)     --------->ALFIN1--------->ARR14(2)      --------->ZAT14--------->HSFB2a(1)        --------->GLK1(1)   <---------ANAC46  <---------ARR14(2)      --------->ZAT18<---------HSFC1(2) ->GLK1(2)      --------->GLK1(2)----------->GT1 --------->TOE2(2)    <---------ZAT14--------->HSFC1(2)   atttcagtggaaatcgagaatcgaaaaatggagtatggggaaaatcgggaacctgtgagcaacggagaagagagcagtggaatcggaagtttcgacgtcg  24160100 --------->ARR14(2)                                  --------->At4g35610 <---------ARR14(2)                                  <---------At4g35610 --------->GLK1(2)                                 <-----------RAV1(2) ---NtERF2                ------>NtERF2           <---------At4g35610        <---------ANAC58 ----HVH21               <---------SPL7    --------->bZIP60(1)               <---------ANAC58 -O2               --------->MYB52(1)      <---------bZIP60(1)  <<<<<<<<<GATA-1 -TGA1a           <---------ARR14(2)    ----------->HVH21       <<<<<<<<<GATA-4 >O2      <---------ANAC46<------NtERF2 ----------->TGA1--------->ATHB12 <---------MYB52(1) >TGA1a<---------DEAR3(1)----------->HVH21 <---------bZIP60(2)  <<<<<<<<<GATA-2                 >>>>> =MYC_MYB<------NtERF2 <---------LBD16<---------At4g35610       <<<<<<<<<GATA-3                 >>>>> ----DEAR3(1)     --------->ARR14(2)  --------->At4g35610     --------->WOX13(1)        <---------MYB46(3)   gagaattcgtcgtcgtagaagaaacggcggacgagtttgtagatgacgagaccgcagatgatttcaatccacatcgtttgcttcgtcttgttgttgaaat  24160200                                                               <---------At4g35610                                                               ============================RAV                                                               --------->ZAT2                                                               ----------->RAV1(2)                                                               --------->At4g35610                                                  ----------->GT1                       ----------->GT1                              --------->GLK1(2)   <----------ID1    *TSS<---------DOF5.7(2)                         --------->CCA1(2) ----------->GT1   <-----------RAV1(2)  ---------->DOF2   - >>>>CBP60g         ---------->DOF2        <---------TOE2(3) ==============================RAV  <---- >>>>SARD1<------ZmHOX2a(1)  <---------GLK1(2)  ---------->DOF2<---------ZAT2  ----------->RAV1(1)---   ttgggaattggaggattgagagaaaagagacgattcttggaaattaagaaaaaagaaaaaaccccagctgaagtaaacgaacaacaaagatgctaaaaac  24160300                                                          --------->LBD16                                                        <---------LBD16                                               <---------ARR14(2)                                               --------->ARR14(2)                                            --------------->AGL15            <---------MYB46(3)             <-----------------AGL2            <------MYB46(1)                <-----------------AG            <---------DEAR3(2)             ----------------->AGL1            <------MYB83                  -------->P  <---------ARR14(2)                         ----           <---------DEAR3(1)             --------->MYB52(1)                                     ----       --------->DAG2                    --------->MYB52(1)   <---------AHL20(2)           --------->AHL20(2)      ---------->DOF2             --------->ANAC46    --------->ARR14(2)                   --------->YAB1 -------->ZAT6              ---------->DOF2<-----------------AGL1  <-----------GT1        ----------- -----MYB52(2) ------------>CBF --------->TOE2(3)    <---------GLK1(1)                ------------>CBF ------>MYB52(1)   <---------ATHB12    <---------MYB52(2) ----------->GT1          ------>ZmHOX2a(1)   taacacaaaaaagtcggttcaatcgagccataaaccacaaaactaaccggttttggtatccggtttaatttacaaaacagtcttcctcttcaataaaaac  24160400                    --------->YAB1                   <---------ATHB12          --------->ATHB51          <---------AHL20(2)          <---------ICU4                                                     --------->TOE1(2)          --------->AHL20(2)                                           <---------TOE1(2)    --------->TOE1(3)                                           <---------YAB1------>ZmHOX2a(1)    --------->TOE2(3)            *TSS      ----------->HVH21   <-----------ARR10         --------->ATHB12 ----->TOE1(3)   --------->WOX13(1)  --------->ARR14(2)    --------->YAB1--------->ATERF1(1) ----->TOE2(3) ------------>CBF<----------DOF2            --------->ICU4<---------ATERF1(1) >TBP    --------->ICU4     <---------ALFIN1   --------->DEAR3(1)--------->YAB1         <-------TEIL   ctaaaaccctaattattttcaatcagacttccactttcgaaacctctcaccgaagctacaatgagtatcatcgcaggctcctacgagagattcatttggg  24160500                               --------->ARR14(2)                              <---------GLK1(2)                            --------->DEAR3(1)                           <------NtERF2                                                            <                          ------>NtERF2                                                            <-                         --------->DEAR3(1)                                                        <-                         <---------DEAR3(1)                                                        <-                       <---------ALFIN1                                                         <----                       <---------ATERF1(1)                                                 --------->DEAR3(1)                      --------->ANAC58                                                     <---------ALFIN1                ---------->DOF2--------->GLK1(2)                             <-----------ARR10 <-----               --------->ANAC58<---------ARR14(2)                           <---------ALFIN1  -------               --------->ANAC46<---------ARR11(1)                 ------>MYB46(1)      --------->MYB46(3)               --------->ANAC58------->TEIL  --------->ZAT6       ------>MYB83         <---------ATHB12            --------->TOE1(2) <---------CCA1(2)                   -------->P--------->O2--------->YAB1            --------->TOE2(2) <---------ARR14(1)      <---------ALFIN1    <---------ALFIN1 --------->AtMYB61     --------->TOE1(3)--------->ANAC46  --------->TOE1(3)        ------>ZmHOX2a(1)   --------->WOX13(1)     --------->TOE2(3)--------->ANAC58  --------->TOE2(3)     XXXXXXXXXXXXXXXXXXXXX>MIR472--------->MYB46(3)   gtttcaagcttaaacccacgaagcacgacgccgaatctcaaaccctaactctctcccctctcttctcctacccttcccacatctccccaatcaccaccgt  24160600                                --------->ATERF1(1)                                <------NtERF2                               <---------ATERF1(1)                             <---------ABI4(2)                             <------NtERF2                             <---------ZAT2                             --------->RAP2.3(1)                            <---------RRTF1(1)                            <---------RAP2.3(1)                            <---------ERF1                            ------>NtERF2                            <---------MYB46(3)                            <---------RAP2.6(1)                            <---------DEAR4(2)                            <---------ORA47(2)                            --------->ABI4(2)                           <---------RAP2.3(3)                   --------->HSFB2a(1)                   <---------HSFB2a(1)                   --------->At4g35610                   <---------HSFC1(2)                   --------->HSFC1(2)                   --------->ZAT2                   <---------At4g35610                   <---------ZAT2                --------->LBD16------>NtERF2                <------NtERF2<---------At4g35610                ------>NtERF2--------->At4g35610                <---------At4g35610              --------->RRTF1(1)--------->DEAR3(2)              --------->RAP2.6(1)              <------NtERF2<---------DEAR3(1)             ------>NtERF2--------->ATERF1(1)           --------->ATERF1(1)<---------ARR14(2)          <---------ATERF1(1)--------->ATERF1(1)          --------->SPL7 --------->LBD16         --------->PCF2  ------>NtERF2         --------->PCF5<---------LBD16         <---------TCP20 <---------ATERF1(1)         <---------ARR14(2)<---------RAP2.3(2)         <---------TCP15(1)--------->ATERF1(2)         --------->ARR14(2)<---------ATERF1(2)        <-----------HVH21<---------RAP2.3(1)     <---------LBD16  --------->MYB52(1) ---------TOE1(2)<------NtERF2--------->ARR14(2) --------ANAC58--------->RRTF1(2)          --------->ANAC46 ------>MYB83 --------ANAC58--------->RAP2.3(2)------>NtERF2             ------>MYB46(1) --------ANAC46--------->DEAR3(1)--------->DEAR3(1)       --------->AtMYB61                <---------WRKY18(1) -----MYB52(1)--------->RAP2.3(1)----------->HVH21    --------->ANAC46                    --------->WRKY38(1) ------HVH21 --------->LBD16<---------ATERF1(1)  --------->AtMYB61            <---------DEAR3(1)   <- -->DEAR3(1)--------->ANAC46<---------DEAR3(2)<---------ALFIN1     <---------At4g35610    --------->WRKY12   cgcttgttccggtcccgccgcagcttccggcggctccgacgatacaatccacctctacgaccttccctccgcttcttccctcggctctctccttgaccac  24160700                                                                                 --------->At4g35610                                                                                 --------->ZAT2                                                                                 <---------At4g35610                                                                               <-----------RAV1(2)                                                                               <------NtERF2                                                                              --------->LBD16                                                                              ------>NtERF2                                                                              <---------At4g35610                                                                              <------NtERF2                                                                             --------->DEAR3(1)                                                                             --------->RAP2.3(2)                                                                             --------->RRTF1(2)                                                                             ----------->RAV1(1)                                                                            --------->RAP2.3(1)                                                                            --------->ATERF1(1)                                                                            --------->RRTF1(1)                                                                            <------NtERF2                                                                            --------->RAP2.6(1)                                                                           --------->ABI4(1)                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                                                          --------->RRTF1(3)                                                                          <---------DEAR3(1)                                                                          --------->RAP2.6(2)                                                                          <---------ALFIN1                                                                          --------->ATERF1(2)                                                                          --------->ANAC46                                                                          --------->RRTF1(2)                                                                          --------->DEAR3(1)                                                                          --------->RAP2.3(3)                                                                          --------->RAP2.3(2)                                                                          <---------ATERF1(2)                                                                         --------->RAP2.3(1)                                                                         --------->RRTF1(1)                                                                         --------->ERF1             --------->MYB46(3)                                          --------->RAP2.6(1)             <---------ATHB12                                            --------->DEAR4(2)           --------->WOX13(1)                                            --------->ATERF1(1)      <---------At4g35610                                                --------->ORA47(2)      --------->ZAT2                                                    --------->At4g35610      <---------ZAT2                                                    <---------At4g35610      --------->At4g35610                                               <---------ATERF1(1)     ------->TEIL--------->DEAR3(1)       --------->ZAT14               ------>NtERF2  --------->ANAC46              <---------ALFIN1                        --------->LBD16  --------->ANAC58             <---------REM1(2)                        --------->ABI4(1)  --------->ANAC58--------->ZAT14 <---------ALFIN1                     --------->ANAC46    <---------MYB52(1)  <---------ANAC55(2)      ------>ZmHOX2a(1)                           --------->DEAR3(1) <-------GAMYB --------ATHB12<---------At5g28300--------->ANAC46 ------>ZmHOX2a(1)  <---------LBD16   <------NtERF2   aatcacgcagcttcaatcaccgctctctccttctacacaccttcttcactctccttccctcgtaatctaatctccgccgccgcagatggctccgttgcta  24160800                                                                                           <---------                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                           --------->ATHB12           <---------ANAC58                                                 ------------>MYB.PH3(1)              <---------ANAC58                                     ---------->ID1       --------->ICU4             --------->HSFC1(2)                        --------------------->WRI1        <---------YAB1             <---------HSFB2a(1)                       <---------ANAC58        ---------->DOF2                       <---------HSFC1(2)                       <---------ANAC58 ------>ZmHOX2a(1)<---------TOE2(3)           --------->HSFB2a(1)             ------>ZmHOX2a(1)     <---------ANAC58  --------->At5g28300             <---------ZAT2             <----------DOF2       <---------ANAC58 <---------MYB46(3)      <-----------HVH21           ====================================HOX2a_HOX2a<---------ATHB12  ------>ZmHOX2a(1)  <-----           ------>ZmHOX2a(2)    <---------MYB52(1)  ----------->GT1   <-------TEIL   --------->ZAT2   tattcgatactgatccttttgttttgcttaagtcgtttcgtcctcataagaaagcggttaatgatttagcgattcatccttcagggaagcttgctttagc  24160900  Previous    Next  AGI:  At1g65020.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO62149.1); contains InterPro domain NERD (InterPro:IPR011528) Range:  from: 24158007    to: 24160268    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g65030.1    Description:  transducin family protein / WD-40 repeat family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO15657.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 24160433    to: 24162338    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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