Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                     ------>ZmHOX2a(2)                                                                                   <---------ARR14(2)                  ---------->DOF2                                      <----------DOF2 ------>ZmHOX2a(1)                <---------YAB1    <---------ANAC55(2)           <---------ZAT14    --------->ARR14(2)              --------->YAB1      --------->ANAC55(2)           --------->ZAT14    <---------ARR11(3)             <---------ATHB12     ----------->GT1           <---------------AtSPL8 --------->ARR11(3)     --------->DAG2           <-----------HVH21       <---------ARR11(3)       --------->YAB1 <------   gtttcaaaaattgaaatcataaaagttcgaaatgtcatgtaacatcggaacaagaagatgtattagtactgtgctttctattgatgatcctcatcagttt  24112800        --------->ARR14(2)        <---------ARR14(2) <-------TEIL    <-------TEIL        <---------DEAR3(2) <------MYB46(1)        <---------MYB46(3) <---------DEAR3(2)     <------MYB83 <---------MYB46(3)     <------MYB46(1) <------MYB83          --------->MYB111(1) -------->MYB111(1)    <---------AtMYB61                                                   <---------DAG2 ---------AtMYB61     <--------P                                                           <--------- -------P            <-------GAMYB                                                        <---------ANAC58 -----GAMYB         <------MYB83                  ----------->GT1                         <---------ANAC58 ---MYB46(1)        <---------MYB46(3)           <---------TOE2(3)                   <---------ICU4 ------MYB46(3)     <------MYB46(1)              <---------TOE1(3)                   --------->ATHB12 ---MYB83          --------->MYB59           --------->YAB1   --------->ARR11(3)    <---------YAB1 ---->MYB59        <---------AtMYB61 <---------WOX13(1)    <------ZmHOX2a(1)--------->ALFIN1 -----AtMYB61<---------ZAT14      <---------YAB1 --------->DAG2   <---------ANAC46  --------->ICU4 ---MYB52(1) --------->ZAT14      <---------AHL20(2)   --------->ICU4       <-----------RAV1(1)   ggttggttcatatactgtagtttggttggttcatttttaattgccatttataaggtaatgaggagatttcgtcgatatgtgttgggattattgctttatt  24112900                                                                                         <-------MYC3                                                                                         ------->PIF5                                                                                         <-------PIF5                                                                                        <---------ANAC46                                                                                        --------->O2                                                                                        <---------bZIP60(2)                                                                                        --------->TGA1a                                                                                        <---------TGA1a                                                                                        <---------ANAC55(2)                                                                                        <---------O2<                                                                             ----------->GT1     <---                                                                             <------MYB83<-------MYC2            --------->ARR11(3)                                               <------MYB46(1)     ----            <---------ARR11(3)                                         --------->AHL20(2)------->MYC2          <---------TOE2(3)                                            <---------AHL20(2)------->MYC3          <---------TOE1(3)       --------->ANAC46                  <---------ARR11(3)  ============= -DOF2<----------DOF2  --------->ZAT6                               --------->ARR11(3) ------------>OsbHLH66   tgccagagttttaaggtctcaattaacacaaactacacaaaattttaaactatagacggattagtcacaagattttatttggtgaaaatcacgtggacaa  24113000                                                --------->AHL20(2)                                       <---------AHL20(2)        <----------DOF2 --------->ARR14(2)      <---------AHL20(2)                     <---------ANAC46  >>>>>>>>>ARR2         <---------ARR14(2)     <---------AHL20(1)                      <---------ANAC58  >>>>>>>>>ARR1         --------->ARR11(3)     --------->AHL20(2)                      <---------ANAC58 ---------YAB1          <---------ARR11(3) --------->AHL20(2)                          <---------ANAC55(1) ------ARR14(2)        --------->CCA1(1)   <---------AHL20(2)                          --------->ANAC55(2) ----->ARR14(2)        --------->RVE1(1)  --------->AHL20(2)                           <---------ANAC55(2) ==================bZIP_DOF ------>ZmHOX2a(1)  <---------AHL20(2)                    <-----------GT1   atacgattgtctttatatggtctaaatatcctgttttttgtttatttaatttaattagccttgaaatagttctgtctgggatgaaatttacgtgttgtca  24113100                     --------->CCA1(2)                    <---------ARR14(2)                    --------->ARR11(3)                    <---------ARR11(3)                    --------->AGP1                    --------->ARR14(2)                ---------->DOF2         --------->LBD16            --------->CCA1(2)        <---------ANAC58           --------->ARR14(2)        <---------ANAC58           <---------ARR14(2)                                       ---------        <---------ANAC55(2)        <---------GLK1(2)                                <---------GLK1(2)     <---------ARR14(2)       -------->P                          <---------ICU4    <---------ICU4     --------->ARR14(2)      --------->MYB52(1)                  --------->ICU4  --------->YAB1     --------->GLK1(2)     <---------MYB52(2)               ----------->GT1     <---------YAB1    ---    --------->RVE1(1)<------ZmHOX2a(2)            --------->AHL20(2)        --------->AHL20(2)-------   aacaaaaaatccgtgccaaaaagatccaaactaaccagatttgagttctgttttaaataagatggaaataatcgctcattatatcataatctcaccacaa  24113200                          <---------AHL20(2)                                            --------->ANAC46                         --------->ARR11(3)                                           --------->ANAC58                         --------->AHL20(1)                                           --------->ANAC58                         <---------ARR11(3)                                          <-------TEIL                         <---------AHL20(2)                                          --------->ZAT14                        --------->AHL20(2)                                           <---------ZAT14-                      --------->AHL20(2)                                         --------------->AtSPL3           <---------ZAT2--------->AHL20(2)                                 <---------AtLEC2        =     *TSS  --------->ZAT2<---------AHL20(1) ------>MYB83           ----------->GT1<---------DEAR3(2)= >AtMYB61<-----------RAV1(2)                ------>MYB46(1)   --------->ANAC58   --------->ETT(1)  <- ------>YAB1     <------ZmHOX2a(2)        <---------MYB59     --------->ANAC46   --------------->AtSPL8 -->MYB46(3) --------->ALFIN1  <---------YAB1                 --------->ANAC58  --------->DDF1     <-   ccagaactaatccaggtggatcaaaaatatattttgatacaagaccaaatcacaaaattcttccaagaaatgttatttgtatgtcggtacacaacatccg  24113300                                   --------->YAB1                                   --------->AHL20(2)      --------->LBD16                                   <---------AHL20(2)     <---------HSFB2a(2)                                  <---------ATHB12  --------->ARR14(2)             <---------REM1(2)----------------->AGL3<---------ARR11(3)                  ---------->DOF2  <-----------HVH21 ------>ZmHOX2a(2)               --------->ARR11(3)                --------->AtMYB61 ----->ZmHOX2a(1)  <------ZmHOX2a(2)               --------->CCA1(1)               ------>NtERF2 =========================HOX2a_HOX2a              --------->RVE1(1)              --------->MYB46(3) ==========================HOX2a_HOX2a <---------AHL20(2) --------->HSFB2a(2)     --------->DEAR3(1) --------ANAC58   <---------ARR11(3)  <---------AHL20(1)  <---------HSFC1(1)    ------>NtERF2 --------ANAC58   --------->ARR11(3)  --------->AHL20(1)  --------->HSFC1(1)   --------->DEAR3(1)   tccttgtcaactctcttcacgatcttattctttccaattatatatttcccaaaatatcttccagaaattttgaatttaactccgacgaccaaaagaagga  24113400                                                                        <---------MYB46(3)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                          ----------->HVH21                                                <-----------HVH21     <---------MYB52(1)                     --------->At4g35610        <-----------TGA1     --------->LBD16                     <---------At4g35610   <-----------ARR10       <---------LBD16--------->ARR14(2)                     <---------ZAT2        <---------ARR14(2)      ------>ZmHOX2a(2)                     --------->ZAT2        --------->GLK1(2)      <------ZmHOX2a(2)                  --------->ZAT2           --------->ARR14(2)    <---------ARR14(2)                  <---------At4g35610     <---------GLK1(2)--------->SPL7<------NtERF2                  --------->At4g35610 --------->LBD16    <-----------HVH21        <---------ARR14(2)                 ----------->RAV1(1) <---------ANAC46    --------->At5g28300<---------REM1(2)               --------->At4g35610  <---------LBD16     --------->ANAC46------>NtERF2             --------->YAB1     <---------ICU4<-----------STF1   --------->ARR14(2)     <---------MYB52(1)    ---------->DOF2 ----------->RAV1(1)<------NtERF2 --------->DEAR3(1) <---------ATERF1(1)   aactgaaaaagacaatgagcagcagcagcgatactcatgccggagaatctcgtcatcgccgtaacccgatccggtggctactcggtttcggtttcttcgt  24113500                        --------->ALFIN1                --------->LBD16                      <---------ANAC58                 <---------ANAC46             --------->GLK1(1)                         <---------ANAC58             <---------GLK1(1)                     <---------At4g35610            <---------ARR14(2)                     --------->At4g35610            --------->ARR14(2)                     <---------ZAT2              <---------GLK1(2)           <------ZmHOX2a(1)                       --------->ZAT2             --------->At4g35610        <---------At4g35610       <---------ARR11(3)   <---------ANAC58       <---------At4g35610  <-   --------->ARR14(2) <---------ANAC46      --------->ANAC46      ------>ZmHOX2a(1)               <--   <---------ARR14(2) <---------ANAC58   ------>ZmHOX2a(1)        <-----------HVH21               ---   acaaggattcagaggattcccatggcttggagccaatttcttcctcacagaacagctccgtgttaatccttcagtgcttcagcttcttcaaaactcagcc  24113600                                 <---------DEAR3(2)                               <------NtERF2                              ------>NtERF2       <---------ATHB12      --------->DEAR3(1)  >>>>>>>>>>>>>>>>>LFY       <---------DEAR3(1)  <<<<<<<<<<<<<<<<<LFY       <---------ANAC46                                        <---------MYB52(1) --------ATHB12           --------->ANAC46                           <---------ARR14(2)             < -------ARR14(2)          <---------DEAR3(1)          <----------DOF2--------->ARR14(2)             - ------>ARR14(2)         <---------LBD16 --------->GLK1(2)   ----------->RAV1(1)    <-------GAMYB   <   aatcttccaatggtcgctaaacccatctacggcgtcgtttcagactctgtctacttctttggccaacatcgaatcccatacatcgccgttggaggtataa  24113700  Previous    Next  AGI:  At1g64880.1    Description:  ribosomal protein S5 family protein. similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT2G33800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69882.1); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5, N-terminal; (InterPro:IPR013810) Range:  from: 24109305    to: 24112809    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64890.1    Description:  integral membrane transporter family protein. similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G04570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62062.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 24113205    to: 24115063    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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