Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <----------DOF2                                        <------ZmHOX2a(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       <---------AGP1               ----------->HVH21       --------->AGP1               <---------YAB1      <---------MYB52(1)           <------NtERF2       --------->MYB52(1)          <------NtERF2        ------>MYB83              --------->ANAC46            --------->ATHB12          ------>NtERF2        ------>MYB46(1)          <---------ZAT18             <---------YAB1          <---------ATERF1(1)  -------->P------>ZmHOX2a(2)                         <----------DOF2         --------->RAP2.6(2)  ------>ZmHOX2a(1)         --------->ZAT18     <---------AHL20(2)         --------->DEAR3(1)   =================HOX2a_HOX2a                --------->CCA1(2)         - ->ZAT6 <---------RAP2.6(2)   ==================HOX2a_HOX2a             <------ZmHOX2a(1)          <-   aattagtttggccgcctctgatagaagacttcctaccgatagatctttctcaactttgtacacaagatagagtaggatataatctctttattgatcaaag  24108900                                                      --------->O2                                                      --------->TGA1a                                                      <---------O2                                                      <---------TGA1a                         <-------TEIL                 <---------ANAC55(2)                     --------->ANAC46                 --------->ANAC55(2)                      <-----                     --------->ANAC58         --------->TOE2(3)                       --------->YAB1                  <---------ATHB12         <-----------GT1                      --------->ANAC46      ---------->DOF2--------->ANAC58 <---------AHL20(2)                  <------ZmHOX2a(1)    <----- -------->YAB1  --------->WOX13(1)    --------->AHL20(2)        --------->GLK1(2)    --------->AHL20(2) --------YAB1--------->YAB1      <---------ATHB12   <-----------GT1     ----------->GT1        <-----   tatgataacaaagtataacaatcaaggcacatcaaatcaatttataaaccctagtcacgtttcaagaatccaaataggaaatacacaataaatattgtct  24109000                                                     --------->ALFIN1                                                   <---------ANAC55(2)                                                   --------->ANAC55(2)                                                   <---------O2                                                   <---------ANAC58                                                   <---------ANAC46                                                   <---------bZIP60(2)                                                   <---------ANAC58                                                   <---------ANAC55(1)                                              <---------ICU4                                              <---------AHL20(2)                          --------->At5g28300                                             <---------AHL20(2)                        <---------At5g28300                                             --------->AHL20(2)                       <-----------GT1 ----ANAC58                               <---------AHL20(2)              --------->AHL20(2)       <- ----ANAC58                              <---------YAB1 <---------PCF2--------->AHL20(2) <---------ZAT6 ----ANAC46     <---------MYB46(3)      <---------AHL20(2)      --------->YAB1----------->GT1  <-----   tgtagagattgcaaatagttgttaagacgaagaacaaactatttttatttattacgtgggtcatattcaaaattgaataaatgtaaatttactgtaaatg  24109100   <----------DOF2   <---------DAG2 ------->TEIL                                                --------->ANAC46 --------ZAT18     <<<<<<<GRF7   --------->AHL20(2)<-----------HVH21                               <- ----ATHB12      ------>ZmHOX2a(1)        --------->YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ==   atgcacttttggataaatcctgacaaaaactagatttatatcgttcataaacctttcacatatcagccattgcaaccatatgaagttttgaaaataagct  24109200                               <-----------------AGL2                          ====================================bZIP_DOF                          --------->O2                                                   --------->ANAC58                          ====================================bZIP_DOF                   --------->ANAC58                          <---------O2                                                   --------->ANAC46                          --------->TGA1a                                             <---------REM1(2)                 <-----------ARR10                                                    <---------ZAT14      <---------YAB1      --------->ANAC55(2)                                         --------->ZAT14      ==============================bZIP_DOF                                        --------->ANAC46      <----------DOF2     <---------TGA1a                                       <-----------GT1 <------MYB46(1) <---------ARR14(2)                                           <-----------HVH21 <------MYB83    --------->ARR14(2)     --------->PCF2  ---------->DOF2  --------->AHL20(2) -------P       <------ZmHOX2a(1)  <------------CBF---------->DOF2       <---------AHL20(2)       --- ===================================MYC_MYB   --------->ATHB12    ----------->GT1 --------->ZAT6  ---   tgtaggtgatttttgggaggatttactcacatgactaaattgggcccatgagtgaaagtgaagcccatttgtaaaataaatgtcacactacacacaaaaa  24109300                                                                   ----------->TGA1                                                                   ----------->HVH21       <---------ICU4                                         ------->TEIL     *TSS                                             ----------->RAV1(2)                      <----- ------>TOE2(3)                                       <---------At4g35610       --------->HSFB2a(2) ------>TOE1(3)                        <---------CCA1(2) --------->At4g35610 <----------DOF2   <-----   ccctaaaaatcatttcagtcttctcaaggtttttgaaatttctatcttccatttccatctgatgaatctctgacgatgtctttgagaactcgagcatcgt  24109400                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               <---------AGP1                               --------->AGP1                               --------->ARR14(3)                                                   -                               <---------ARR14(3)                                                 ---                               <---------ARR14(2)                                                 ---                               --------->ARR14(2)   <---------ARR11(3)                          <----                               --------->ARR11(3)   --------->ARR11(3)                       <-------                               <---------ARR11(3)  --------->GLK1(1)                         <-------                              <---------CCA1(2)    <---------GLK1(1)                        ---------                             ----------->ARR10     <---------RVE1(1)                        ---------                       <---------ARR14(2)         <---------ARR11(3)                  --------->LBD16                       --------->ARR14(2)         --------->ARR11(3)          <---------ICU4<--------                      <------NtERF2              --------->At4g35610     --------->TOE2(3) <---------GLK1(2)    <------NtERF2    --------->LBD16             <---------At4g35610------>ZmHOX2a(1)<---------HSFB2a(2) ------TGA1         --------->ANAC46         <-----------TGA1      --------->TOE2(3) --------->HSFB2a(2) ------HVH21       <---------LBD16           <-----------HVH21  --------->ARR14(2)  <---------LBD16<-   catggcctcgtcttctacttcgccggaaccctagatcttcattttctcgtcagatatctactctcgattcctcaacatcaacatttcccagaagaatctc  24109500                                             ===================================HOX2a_HOX2a                                             ------>ZmHOX2a(2)                                   --------->ANAC46 -------->ARR14(2)       --------->LBD16    <---------GLK1(1) -------->GT1           --------->ANAC46   <---------ARR11(3)                 --------->YAB1 ------>LBD16           --------->LBD16    <---------AGP1                   --------->ANAC58 -----LBD16            <---------LBD16     --------->ARR11(3)   <---------ARR14(2) --HSFB2a(1)    ====================================HOX2a_HOX2a --------->ARR14(2) --GLK1(1)      ------>ZmHOX2a(1)  ------->GAMYB <---------At4g35610        --------->ANAC58     <--- >ARR14(2)   ------>ZmHOX2a(1)     --------->ANAC58             <-----------ARR10       --------->MYB46(3) >GLK1(2)   <---------ALFIN1--------->WOX13(1)   --------->At4g35610      ---------->DOF2        <--- ---ARR10 ------>ZmHOX2a(1)---------->DOF2 ------->TEIL        <---------MYB52(1)     <-----------GT1 --------MYB52(1)  <----------DOF2 --------->ANAC58      <---------SPL7  ------>ZmHOX2a(1)       ----   cggttactactcctcctccttctttcccgtaaatcaaacgccatggatctcatctcagaggtaccgtttcttctcctcaagcacaatgtcaccatcggaa  24109600          <---------ZAT6                         <-----------HVH21          <------ZmHOX2a(1)      --------->ZAT14        <---------MYB46(3) <---------ANAC58          --------->ANAC58      <---------ZAT14       <---------AtMYB61   <---------ANAC58          --------->ANAC58 ------ZAT2          ---------->DOF2            <---------ANAC46   ---------->DOF2 ------At4g35610--------->ARR11(3)          --------->At4g35610<----------ID1              --------->ARR11(3) ----->At4g35610<---------ARR11(3)  ---------->DOF2         <------ZmHOX2a(1)          ---------->DOF2   gctgatagagtagtgagagaacttatagcagaggttgagaaagagaagcagcgtgagagagaggagagacaaagacaaggacttgattacaaagacattg  24109700                                                                                            ---------                                                                                           ----------                                                                                         <---------ANAC58                                             --------->GLK1(2)                    <---------AHL20(2)                                         <---------HSFB2a(2)          <---------YAB1     <---------ANAC58                                         --------->HSFB2a(2)--------->GLK1(2)    --------->AHL20(2)                                   <---------MYB52(1)      <---------GLK1(2)     <---------AHL20(2)                                 <---------ANAC46      --------->At4g35610----------->GT1<---------ANAC46   atgccgaagacgaagaagattacttagggattgagccgtttatcgagaagcttaagaagcagaatttgaaagatgatggtgaattaaataggcgtgaaga  24109800  Previous    Next  AGI:  At1g64880.1    Description:  ribosomal protein S5 family protein. similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT2G33800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69882.1); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5, N-terminal; (InterPro:IPR013810) Range:  from: 24109305    to: 24112809    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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