Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------>ZmHOX2a(1)                -----                                                              --------->TOE2(3)                 <----         <---------TOE2(3) <---------MYB46(3)              --------->ARR14(2)                <-------  ----------->GT1   ------->PIF5----------->ARR10          <---------ARR14(2)    --------->YAB1------ --------RAV1(2)    <-------PIF5<---------TOE2(3)   <---------ZAT2 --------->ANAC58          -------- --->TOE1(3)       ----------->RAV1(2)              --------->ZAT2 --------->ANAC58       ----------- --->TOE2(3) ---------->DOF2<-------GAMYB           <---------GLK1(1) <----------DOF2   <---------ANAC58 -GLK1(1)<---------TOE1(3)<---------AtMYB61         <---------At4g35610         --------->ICU4 <----- >GLK1(1)<---------YAB1 <----------DOF2         --------->ALFIN1   --------->ANAC46     <---------ANAC58   cagaaggttttatggtaaagcccctgctttggttgagatttgtatgcacagtggagctcgggttcctcaacgctataaggccatgatgaggcttgacatc  24091900                     ------>NtERF2                     <---------RAP2.6(3)                                                          <--                     <---------DDF1                                                               <--     ------>ZmHOX2a(1)     <-----------HVH21                                                      --- ---->ATHB12        --------->RAP2.6(2)                                                    --------->AHL20(1) -----ICU4          ----------->HVH21                                             --------->At4g35610 --bZIP60(1)        --------->DEAR3(1)                                      ---------->DOF2<---------AHL20(2) --->ICU4          --------->DEAR3(2)                            <----------DOF2  <---------At4g35610 ->bZIP60(1)      --------->At4g35610               ---------->DOF2      <------ZmHOX2a(1) --------->AHL20(2) >HVH21           <---------At4g35610    <---------------------WRI1  <<<<<<<<<MYB98 ----------->GT1 ----YAB1      <------ZmHOX2a(1)        ------>ZmHOX2a(1)   <---------GLK1(1)    --------->GLK1(2)---   attgttcctgattcacaggaagccgacatggtcgcataagtccttggaaatgttcaaagtagaactcctttgttaggataaagaagctgaaaataaaatg  24092000               <----------DOF2              =============HOX2a_HOX2a              --------->HSFB2a(1)              <---------HSFB2a(1)              ===================HOX2a_HOX2a              ------>ZmHOX2a(2)             <------ZmHOX2a(2)             ====================HOX2a_HOX2a             ==============HOX2a_HOX2a            --------->ARR11(3)            <---------ARR14(2)            <---------ARR11(3)           <------ZmHOX2a(1)      --------->ZAT2      --------->STY1(2)      <---------STY1(2)                                                       <---------AHL20(1)      <---------ZAT2                                                          --------->AHL20(1)   <---------ANAC58       <------ZmHOX2a(1)                                   --------->AHL20(2)   <---------ANAC58     <---------TOE1(2)                                   <---------AHL20(1)  <---------STY1(2)     <---------TOE2(2)                             ----------->GT1       <--------  --------->STY1(2)  --------->TOE2(1)                              <---------ANAC46   <---------ARR11(3) -------ZAT2--------->ARR14(2)             <-----------HVH21        <---------ANAC58   --------->ARR11(3) -------At4g35610    --------->TOE1(1)<---------ARR11(3)            <---------ANAC58  <---------GLK1(1) ------>At4g35610   ------>ZmHOX2a(1) --------->ARR11(3)    ------------>CBF--------->AHL20(1) ------>ZAT2<-----------ARR10        <---------GLK1(1)     <-----------GT1  <---------AHL20(2)     --   agctggctagctaggatctttcctcgtaggagacattagaaatcttgtcatatagtgtattttgcaatttgggtgtaaaatattttagaaatcttgtcat  24092100                                            -------->P        --------->AHL20(2)                                          ------->GAMYB       <---------AHL20(2)             <---------CCA1(1)           <---------MYB52(2)   --------->AHL20(1)                 ----             <---------RVE1(1)           --------->MYB46(3)  --------->YAB1                      <---            --------->ARR11(3)   <------------CBF           --------->ICU4                       ----            <---------ARR11(3)  --------->YAB1         ----------->GT1                           <---     --------->AHL20(2)         --------->ATHB12       --------->YAB1                           -----     <---------AHL20(1)         -------->ATHB1   <-----------HVH21                              <----     --------->AHL20(1)        <---------ATHB12 --------->LBD16<---------YAB1                   <---- ---HVH21  <<<<<<<<<RAP2.2     <---------YAB1 <---------LBD16<---------ICU4  --------->ZAT14<-------- --------->GT1         <---------GLK1(2) <---------MYB111(1)<---------YAB1   <---------ZAT14---------   atagaaatattttagatatttgtttgattctctatcattgacaactaacccggtcactggtaattataatggagacgacttcagtggtatttgtttaaat  24092200                                                                                           --------->SPL7                                                                                        <---------ANAC55(2)                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                      <---------ANAC46                                                                                    <---------MYB46(3)   <----------DOF2                                                                  <---------DEAR3(2) ----->AHL20(2)                                                                     <------MYB46(1) ------AHL20(2)                                                                     <------MYB83 <--- ----->ATHB51                                                                      <---------AtMYB61 ------ICU4                                                                        <---------TOE1(2) ---->AHL20(2)           --------->ARR11(3)     --------->At4g35610        --------->GLK1(1)   ------ -----AHL20(2)           <---------ARR11(3)     <---------At4g35610        <---------GLK1(1)  <------ZmHOX2a(1) -----AHL20(1)       ---------->DOF2--------->TOE1(2)                --------->MYB52(1)<-------TEIL -AHL20(2)       --------->GLK1(2) ------>ZmHOX2a(2)           --------->ATHB12    <---------DEAR3(1) >AHL20(2)      <---------GLK1(2)  --------->MYB46(3)        <---------WOX13(1)   <---------MYB52(1)<   tatttctttgtcttgaaagattctaaagatgttttgatccaacgagtttttgctgaaaaactgaatgatggaaacggatttctcgttggtgcgtaaggag  24092300                                                                             ------>NtERF2                                                                           <------NtERF2                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                          <---------RRTF1(1)                                                                          <<<<<<<<<AtERF-5                                                                          <<<<<<<<<AtERF-3                                                                          ------>NtERF2                                                                          <<<<<<<<<AtERF-7                                                                          <---------RAP2.3(1)                                                                          <<<<<<<<<AtERF-4                                                                          <---------DEAR3(2)                                                                          <<<<<<<<<AtERF-1                                                                          <<<<<<<<<AtERF-2                                                                          <---------ERF1                                                                          <---------ATERF1(1)                                                                          <---------ORA47(2)                                                                         <---------DEAR3(1)                                                                         <---------RRTF1(2)                                                                         <---------RAP2.6(2)                                                                         <---------ANAC46                                                                         <---------DREB2C(2)                                                                         <---------RAP2.3(2)                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                         <---------RAP2.3(3)                                                                         <---------RRTF1(3)       >>>>>>>>>TBF1                                                     <---------ATERF1(2)     ----    >>>>>>>>>TBF1                                               <---------ZAT2    <---------ATHB12 ---ZmHOX2a(1)                ----------->GT1                   --------->At4g35610        <---------ARR14(2) --->ALFIN1    --------->MYB52(1)                --------->ICU4 <---------At4g35610    <------NtERF2 ------ZmHOX2a(1)   <------ZmHOX2a(1)          <---------At4g35610      --------->RAP2.6(3)--------->ARR14(2)   gaggaagaagaagaagataacaggaatgggatgagttatttgtcaatggagatgatgaagaaggtgagctccatggcggctccaatggtggcagtttcgg  24092400                                      <------MYB83                     --------->At4g35610                     <---------At4g35610                         --------->At4g35610                --------->ANAC58      <------MYB46(1)            <---------At4g35610                --------->ANAC46     <---------MYB46(3)          ----------->RAV1(2)            ------>ZmHOX2a(1)       <---------ANAC58             <---------ZAT2         ------>ZmHOX2a(1)          <---------ANAC46             --------->ZAT2 ----->ARR14(2) --------->ANAC58    <---------ANAC58--------->ZAT2 <-----------RAV1(1)         <-----   tttctcaattcctccttcaagtcatctccatggttatggctggtcatttggacgagctctcgctctcagctgtcgcaattgccacttccctcaccaatgt  24092500                                 <-------GAMYB                                <---------ANAC58                             ------->PIF5                             <-------PIF5                            <---------At4g35610                            --------->At4g35610                            --------->ZAT2                            <---------ZAT2                          <-----------RAV1(2)                    <---------ANAC58                     <----------DOF2                    <------MYB46(1)                --------->WRKY18(1)                    <------MYB83<---------ANAC58  <-----------HVH21                    <---------ANAC58            <---------RAP2.6(2)              --------->DAG2                    <---------ANAC46            <---------ANAC58            ----------->GT1                 <---------MYB52(1)             <---------ANAC58<---------At4g35610               --- ------HVH21   --------->ATHB12<-------TEIL <----------DOF2     --------->At4g35610     <-------TEIL   cactggtttcagcctcatcgttgggtttgcaggtgcgttagacactctttgcggtcaagcttttggagcagaacaatttggaaaaattggtgcatacact  24092600                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        <---------ARR14(2)                                                                                        <---------ARR11(3)                                                                                        --------->ARR11(3)                                                                                        <---------GLK1(2)                                                                                        <---------ARR14(3)                                                                              <-----------GT1                                                                           <---------GLK1(2)------>ZmHOX2a(1)                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                           --------->ARR14(2)                                                                  --------->ARR11(3)    --------->AGP1                                                        <---------AtLEC2   <---------ARR14(2)    <--- <---------At4g35610                             ----------->GT1  <---------ARR11(3)    --------->ARR14(3) --------->At4g35610                         <---------SPL7     --------->ANAC58        --------->ARR14(2) ------->DOF2                   <-----------GT1<---------TOE1(2)--------->ANAC58      ----------->ARR10   tacagctcaatgctctgtcttctcgttttctgtttttcaatctctatcgtatggtttttcatggacaagctcttggagattttccatcaagatcctctca  24092700                   --------->ANAC58                   --------->ANAC58                <---------GLK1(2)                                                          --------->ANAC58                --------->ARR11(3)               --------->ARR14(2)                        --------->ANAC58                <---------ARR11(3)               <---------ARR14(2)             <-----------GT1                <---------ARR14(2)           <---------LBD16                   --------->GLK1(1) <---         <---------ANAC58               <----------DOF2           --------->TOE2(2)  <-----------HVH21         <---------ANAC58          --------->RAP2.6(3)            --------->TOE1(2) --------->ANAC46 ------CCA1(2)  --------->ARR14(2)--------->MYB52(1)<-----------GT1  ----------->HVH21     --------->ANAC46   tctctcaattagcttgcagatactcaatctggctcataccggctttattcggattcactcttcttcaacctatgactcggtatttccagtcacaaggaat  24092800  Previous    Next  AGI:  At1g64810.1    Description:  APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1). Identical to APO protein 1, chloroplast precursor (APO1) [Arabidopsis Thaliana] (GB:Q9XIR4); similar to APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) [Arabidopsis thaliana] (TAIR:AT5G57930.2); similar to APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) [Arabidopsis thaliana] (TAIR:AT5G57930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79322.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70440.1); contains InterPro domain Protein of unknown function DUF794, plant (InterPro:IPR008512) Range:  from: 24090221    to: 24092188    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64820.1    Description:  MATE efflux family protein. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G66780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42224.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) Range:  from: 24092268    to: 24094221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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