Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ---------->DOF2                        <---------MYB52(1)                 ----------->HVH21              <---------At4g35610                       <-------GAMYB                      <------NtERF2  --------->At4g35610     ----                      <---------MYB46(3)                  --------->ATERF1(1)             --------->At4g35610                      --------->MYB52(2)                  <---------At4g35610       <---------AHL20(2)                     --------->SPL7                      <---------ATERF1(1)        --------->AHL20(2)                   <---------SPL7                       <---------DEAR3(1)         <---------AHL20(2)               --------->YAB1              <----------DOF2--------->At4g35610----------->GT1 --------   tccatagatgcctaaaatcatcgtccgttacaaacccagttttctctttggaagaaaggctgcgacccaaagagaagcagagttatttatttagcagaag  24051900                                                                       <---------ANAC58                          --------->MYB52(1)                           <---------ANAC58                         <---------ARR14(2)                            <---------ANAC46                    --------->ALFIN1                               --------->DOF5.7(2)                  <---------O2                               <---------LBD16                  --------->TGA1a                       --------->TOE1(3)                  <---------TGA1a        <---------ATHB12   ----------->RAV1(2)       ---------->DOF2   --------->ARR14(2)             --------->AtMYB61       =====================bZIP_DOF   --------->WOX13(1)  -------->P <---------TOE2(3)   =========================bZIP_DOF--------->TOE2(3)   --------->TOE2(3)--------->ALFIN1   ---------->DOF2--------->O2     --------->REM1(1)    <---------DAG2<---------TOE1(3) ------->GT1  --------->CCA1(2)<-----------HVH21 --------->At4g35610 <---------DOF5.7(2)     <------ZmHOX2a(1) ->At4g35610 <----------ID1   ----------->GT1 <---------ATHB12    <-------GAMYB            <---------TOE2(3)   agtaagaaagaaagagagacaagtggggaaacgggttacatcaatgaaatcatctcaaccttacctggggttaacgtggtgagaagaagttttgaggatg  24052000                                                                                         ------->GAMYB                                                                                         --------->AtMYB61                                                                                        --------->MYB46(3)                                                                                       ------>MYB46(1)                                                                                       -------->P                                                                                       ------>MYB83                                                                                     --------->MYB46(3)                                                                                     --------->AtMYB61                                                                                     <---------MYB111(1)                                                                                     ------->GAMYB                                                                                    --------->DEAR3(2)                                                                                    --------->MYB46(3)                                                                                    <---------MYB55(2)                                                                                    <---------ATHB12                                                                                   --------->ANAC58                                                                 --------->TGA1a   ------>MYB83                                                                 <---------TGA1a   ------>MYB46(1)                                                                 ----------->RAV1(2)<---------MYB52(2)                                                                 --------->O2      --------->ANAC58                                                                 ============================MYC_MYB                                                                 ============================MYC_MYB                                                                 ===========================MYC_MYB                                                                 <---------O2      -------->P                    <------ZmHOX2a(1)                            ===========================MYC_MYB            <---------YAB1                                     <---------ALFIN1    --------->ANAC46       <---------ZAT2                                         --------->ZAT18     ------>MYB46(1)       --------->At4g35610                                    <---------ZAT18     ------>MYB83     <-       --------->ZAT2                                      --------->ANAC58    --------->ANAC46  <---       <---------At4g35610<---------TOE2(3)                --------->ANAC58    --------->ANAC58 <---- --------->ALFIN1 <---------TOE2(3)                      --------->CCA1(2)     --------->ANAC58------   gaagtgggaagctgaagattgaggaatttaggtgaattggacaagagtttagaatcgagataagcccacttgggcctccaaacccaaccaaccaaaacac  24052100          --------->WOX13(1)    <---------ALFIN1    ----------->RAV1(1)   --------->MYB46(3)  --------->At4g35610    ----------->RAV1(1)  <------NtERF2         <------NtERF2 --------->RAP2.6(2)  <---------ANAC58                                            --------->GLK1(1) --------MYB52(1)     <---------ANAC58                    --------->At5g28300 --------->ANAC58 ------ATERF1(2)      <---------ANAC46        ---------->DOF2                 --------->ANAC58 -----LBD16        --------->ALFIN1     <-----------HVH21----------->GT1      --------->ANAC46<------ --->MYB52(1)   <xxxxxxxxxxxxxxxxxsmallRNA(le3) --------->GLK1(2)     ---------->DOF2        <-------   cggcagccacagcaatccagagtggcgcaacaaaaactataaggtcagagaagccgaggctgtgaaactcggtaaagaccaaggaactcaatcccatcat  24052200                     <---------ANAC46                     <------MYB46(1)                    <------MYB83                    <---------MYB46(3)                    <------MYB46(1)                  <--------P                 <-------GAMYB                <---------MYB46(3)                --------->MYB55(2)     <---------ALFIN1<------MYB83                                                       --------->YAB1   <---------ATERF1(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            ----------->GT1   ------>NtERF2--------->ATHB12<---------ARR14(2)                                   *TSS  --------->DEAR3(1)--------->MYB59  ---------->DOF2                              <------ZmHOX2a(1) ---ICU4       <---------AtMYB61<---------ARR11(3)        <------ZmHOX2a(1)      ----------->GT1 --ATHB12     <---------MYB52(1)--------->ARR11(3)<------ZmHOX2a(1)         >>>>>>>>>TBF1   ctcgccccctccctccgatggttgggtcttgggagatattgaagcgctgggaggagtcgaggagaccaagagattgaagaagaaggagaataaaaacgag  24052300                                                    --------->MYB52(2)            <------ZmHOX2a(1)                      --------->SPL7           --------->ICU4                        <---------SPL7                    <---------ALFIN1          <---------TOE2(3)                     <---------ANAC58                   --------->ANAC46          <---------TOE1(3)           ------------>CBF  ------------>CBF         --------->ANAC46  <-      <------ZmHOX2a(1)         --------->ZAT14 <---------ANAC58                <---------REM1(2) ---   agagaagaggataaggattagaatttgggattactgtaggcccaatttcggcgttcgatgcaatcttcgcctctcgtttctatacacacctctctctcaa  24052400                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                  <--            <---------YAB1                                                                       <---      --------->ANAC58              ----------->GT1                                             -----      --------->ANAC58       --------->YAB1                                                    <-----      --------->ANAC46    <----------DOF2                       <---------At5g28300           <------    --------->ANAC46      --------------->AGL15                <-----------GT1             <---------  <-----------GT1         --------->TOE2(3)             ----------->GT1                 --------->GLK1(2) --------AHL20(2)         <---------------AGL15     ---------->DOF2                    <---------GLK1(2) ------>AHL20(2)      <---------CCA1(2)      ---------->DOF2  <---------YAB1<---------ALFIN1 <-------   ttttatacacgactaccattacccatttctttaataagtggataaaaaaaagaccaaagtgtttattactgcctgtctccactcgtttcgattctgtggt  24052500  <---------ALFIN1  --------->ATERF1(1) <------NtERF2 ------>NtERF2 <---------ATERF1(1) -------->DEAR3(1) -------->RAP2.6(2) --------LBD16 -----NtERF2 ------->RAP2.3(1) ------->ATERF1(1) -------ATERF1(1)                                      <---------At4g35610 -------ORA47(2)                                       --------->At4g35610 -------RAP2.3(1)                              <---------YAB1 ------DEAR3(1)                               <---------AHL20(1)                ---------->DOF2 ---->ATERF1(1)              <----------DOF2  <---------AHL20(2)           <---------TOE2(3) ------HVH21              <-----------GT1     --------->AHL20(1)           <---------YAB1 ---MYB46(3)         <----------DOF2         --------->YAB1                <---------TOE1(3) --RAV1(1)    <---------ALFIN1               --------->AHL20(2) <---------AHL20(2)                <-- --AtMYB61 <---------ALFIN1*TSS             <---------YAB1      --------->AHL20(2)    <----------DOF2   cgccgcatccctccctcccccttctttttttcttttctgttttgctattatatttgctgctaccatttaaaatttttaagattaaagtctttataaaaaa  24052600                       <----------DOF2                     <---------RVE1(1)                     <------ZmHOX2a(2)                    <---------ARR11(3)                    --------->ARR14(2)                    --------->ARR11(3)                    --------->ARR14(3)                    <---------ARR14(3)                    <---------ARR14(2)                                               --------->ATHB12            --------->AHL20(2)                                                      --------->AHL20(2)            <---------AHL20(2)                                                      <---------YAB1        --------->AHL20(2)                                                          <---------AHL20(2)        <---------AHL20(2)                                                --------->ARR11(3)    --------->AHL20(2)------>ZmHOX2a(2)      --------->YAB1               <---------ARR11(3)  <----------DOF2  --------->RVE1(1)  --------->YAB1                    ----------->ARR10           - ---------GT1   ---------->DOF2<-----------ARR10        --------->AHL20(2)<---------GLK1(2)     <----   aaaccttttattaattaaaaaagatcttttgcaaaactaagcatatttcataacttaaaaatatagcattagaatagattttgtatataattggtcatat  24052700                                                                               <-----------GT1                                                                             --------->DOF5.7(2)                                                                            <----------DOF2                                        ---------->DOF2                     --------->TOE2(3)                                     <---------WOX13(1)             --------->AHL20(2)                       --------->HSFB2a(2)                         --------->AHL20(2)       ---------             <---------GLK1(2)    --------->AHL20(2)           --------->AHL20(1)     <-----------GT1   <---------MYB46(3)  <---------HSFB2a(2)                     --------->AHL20(2) <---------DAG2    < -------->YAB1   <----------DOF2  <---------AHL20(2)           <---------AHL20(2) <----------DOF2   - -----AHL20(2)--------->GLK1(2) <----------DOF2      <---------GLK1(2)      --------->TOE1(3)      --   aatcgtggttacatagattctttttctaaaaactctttaattgaaagtataaaaagattagcaaataaaataaaaaaactttaactttttacatatgtaa  24052800  Previous    Next  AGI:  At1g64720.1    Description:  CP5. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62888.1); contains InterPro domain Lipid-binding START (InterPro:IPR002913) Range:  from: 24050216    to: 24052285    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g64730.1    Description:  pseudogene, putative NADH dehydrogenase subunit F, blastp match of 68% identity and 5.3e-08 P-value to GP|3366920|gb|AAC68594.1||AF064655 NADH dehydrogenase subunit F {Stanleya pinnata} Range:  from: 24052527    to: 24052823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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