Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ----------->GT1                                                                <-------TEIL                                                               --------->ARR14(1)                                                               --------->GLK1(2)                                                               --------->CCA1(2)                                                              --------->ARR14(2)                          ---------->DOF2                     --------->ARR11(1)                        <---------YAB1                        <---------ARR14(2)                  ---                      --------->YAB1                          <---------GLK1(2)                   <--                     <---------YAB1                         --------->ICU4                       ----                   <---------ICU4                 <---------AHL20(2)<---------TOE2(2)           -----                  <---------YAB1                  --------->AHL20(2)<---------TOE1(2)           <----                  --------->ICU4         <---------PCF5     ----------->ARR10                  ------                --------->YAB1      --------->ALFIN1      ---------->DOF2           ---------->DOF2 -               <---------YAB1      <------ZmHOX2a(1)   ----------->GT1<------ZmHOX2a(1)        <-----   agtttccttcacttcttatgatgattataaaagtataggagggggaccatatttaaaatgtaaagattcggaggataataccattagaaagttggacatc  23996800 ------>ICU4 -------YAB1                                                                  <---------AHL20(2) ----->TOE2(3)                                                               --------->AHL20(1) ---->ATHB12                 <---------ZAT18                              --------->AHL20(2) -----ICU4                 --------->ANAC46                             <----------DOF2      <------- --->ICU4                  --------->ANAC58                  <-----------GT1 <---------AHL20(1) <---- ---------->GT1     --------->ANAC46                 <----------DOF2 <-----------GT1         <------- ----YAB1    <---------ZAT6--------->ANAC58        <------------------------ANAC81           <-------   attagtaaatagtgagtgttacccaaaacaaggcactatctatgcattgtttctgcttttatattacagtttttctttatatattttggacgattatggt  23996900                     <---------YAB1                    <---------AHL20(2)                    --------->AHL20(1)                    ------>ZmHOX2a(1)                    <---------AHL20(1)              --------->YAB1 --TOE2(3)          --------->AHL20(2)   <---------At4g35610 -----ANAC46       --------->YAB1     <-------TEIL <---------YAB1                               <---- --TOE1(3)        <---------ATHB51<---------YAB1   <---------ATHB12                             ----- --YAB1  --------->AHL20(2)<-----------GT1     ------>ZmHOX2a(1)                         <----------DOF2   ttgtattcacataaatttcaattataattttgctatatgattcatcttcctctatcattcctcttagtcaaatagagttggctaactaaaccttttattt  23997000                                                              <---------YAB1                                                            --------->ATHB51                                    --------->YAB1          --------->AHL20(2)                                   <---------ATHB12         <---------AHL20(2)                               <------NtERF2                <---------ICU4                        ---                              ------>NtERF2     <---------AHL20(2)                           <-------      <-----------GT1      <---------ANAC58    --------->AHL20(2) <-----------GT1            <------- --------->YAB1            <---------ANAC58 ------>MYB83 <---------ICU4                     --------- -----AHL20(2)            <---------AtMYB61 ------>MYB46(1)--------->ICU4                --------->TOE2(3) ---->AHL20(2)   <-----------GT1 --------->WOX13(1)      --------->YAB1         <-----------GT1------   taatcaaattactccgttttaacttgttttggtgccaatcaaaaccaaattttatacactaattatttttactcgtttttttttacaaaaacattaagaa  23997100                                                                                                  ---                                                                                                  ---                                                                                                  ---   ----------->RAV1(1)                <---------MYB46(3)--------->ZAT6                          ----- ------>YAB1                     --------->LBD16   <---------REM1(1)                            <---- --YAB1                   <---------DAG2    ------>ZmHOX2a(1)                                   *TSS --TOE2(3) --------->AHL20(2)   --------->ANAC46  --------->ARR11(3)                          <------ >YAB1--------->TOE2(3)   <----------DOF2  --------->TOE2(3)                                  ------- --->YAB1  <---------AHL20(2)  <---------LBD16---------->DOF2----------->TBP         --------->AtMYB61   tgatacaacataaaaaaatgttgtctccctttatccgcatttgttcctcaaagatgtagcactataaatagtctcatcaccctaagaccaaaaccccaac  23997200                                                                                         --------->TCP16(1)                                                                                         --------->PCF5                                                                                         <---------PCF2                                                                                        <---------TCP16(2)                                                                                       --------->ABI4(2)                                                                                      <---------AtMYB61                                                                                      --------->ALFIN1                                                                                     <---------MYB52(1)                                                                                    --------->LBD16                                                                                  <------NtERF2                                                                                  <-----------RAV1(2)                                                                                 ------>NtERF2                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)        <---------At4g35610                                                --------->ARR14(2) ------>ANAC58             --------->ARR14(2)                  --------->At5g28300<---------LBD16 <-- ------>ANAC58          --------->ANAC46                       <-------GAMYB   --------->At4g35610--- ------>ANAC46          ------->GAMYB                  <---------WOX13(1)  <---------ARR14(2)     <-- ---->ZAT6           --------->ARR14(2)              --------->ATHB12    ----------->HVH21    <------ -----ALFIN1         --------->MYB52(1)              <-----------------------TaNAC69(2)<---------MYB46(3) ---ALFIN1 --------->ZAT14 <---------ARR14(2)       <---------YAB1     ----------->RAV1(2)  <-------- ---->RAV1(1)        <---------ARR14(2)        ---------->DOF2----------->GT1------>ZmHOX2a(2)-------   actcaaactcaactgctctcccataaccgaaaccgagagaaaatatagaaaaagatgattgagacggttaaacacctgatcggctccggtggtcccagcg  23997300                          <-----------HVH21                       --------->YAB1                       <---------ICU4                      <---------ATHB12                      <------ZmHOX2a(2)                   --------->DEAR3(1)                 --------->ABI4(1)                 ------>NtERF2                --------->DREB2C(2)               --------->MYB46(3)            --------->MYB46(3)           <------ZmHOX2a(2)          --------->ARR11(3)          <---------ARR11(3)          --------->ARR14(2)                              ------->GAMYB          --------->AGP1 <---------bZIP60(1)             <------------AtMYB77          <---------ARR14(2)                             --------->MYB46(3)     --------->WRKY18(1) --------->bZIP60(1)            >>>>>>>>>MYB1 -------ARR14(2)--------->DEAR3(1)          ------>ZmHOX2a(2)     <---------YAB1 ------>ARR14(2)------->GAMYB              --------->GLK1(1)    --------->YAB1 -------GLK1(2)--------->DEAR3(2)          <---------GLK1(1)    <---------ICU4         ---------->DOF2 ---At4g35610 <---------At5g28300         --------->ARR11(3)   --------->ICU4 --------->YAB1 ---RAV1(2)--------->CCA1(2)         --------->ICU4     >>>>>>>>>MYB2    <--------P --------->TOE2(3) -->At4g35610<---------ALFIN1 <---------ANAC46   <---------MYB52(1)    <---------MYB46(3)   <--------   gattcgggtcaagatccaccgccgatcatgtcacttgtaattctgatctccgttctctaactgccatcatcactggttagtcataaacttaaagttactt  23997400                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                                <------NtERF2                                                                              <---------DEAR3(1)                                                                              <---------ANAC46                                                                             --------->ALFIN1       -                                                                            <-----------HVH21      <-                                                                           <---------bZIP60(1)    <--                                                                           <---------bZIP60(2)    ---                                                                           ==========================                                                                           <---------O2          <---                                                                           <---------TGA1a       <---                                                                           --------->bZIP60(1)   <---                                                                           --------->O2  --------->ZAT2                                                                           <---------ANAC46      <---                                                                           --------->bZIP60(2)  <----                                                                           <---------DEAR3(1)   <----                                                                        ----------->HVH21<---------At4g35610                                                                        <------NtERF2    --------->At4g35610                                                                       ------>NtERF2     <---------ZAT2               ------->GAMYB                                          --------->ANAC46 <------ZmHOX2a(1) <----------DOF2    ----------->GT1 ------>ZmHOX2a(1)     ===========================bZIP_DOF   <---- ---GT1     --------->MYB52(1)     <---------MYB59        <----------DOF2  --------->TGA1a   --------   cttctttttcaacttaaccgagtcgcaaaatgagtttcctaactaatagtctctctgtttcttttctactaggcgcgacgtcggggataggagctgagac  23997500  <-------MYC3  ------->MYC2  ------->MYC3  <-------MYC2 <---------ANAC58                                                                               ===== <---------ANAC46                                                                               ----- <---------ANAC58                                                                             <------ <------NtERF2                                                                              <-------- ----->NtERF2                                                                             <---------HSFB2a(1) --------ANAC46                                                                           <---------HSFC1(2) ----NtERF2              --------->ANAC58                    ------>NtERF2                --------->HSFC1(2) ------>ATERF1(1)        --------->ANAC58                    --------->LBD16              --------->HSFB2a(1) =======================MYC_MYB                             --------->DEAR3(1)        --------->ETT(1) ------RAP2.3(1)       <------NtERF2                     --------->DEAR3(1)        ================== ------DEAR4(2)      <---------ANAC46            <-----------HVH21   ---------->DOF2<-----------HVH21 ------ATERF1(1)    <------NtERF2               ----------->GT1 <------ZmHOX2a(1)  <-----------RAV1(1) ------ORA47(2)   --------->ALFIN1     ------>NtERF2     ------->GAMYB         <---------ZAT14------- -----RAP2.3(3)   <---------DEAR3(1)   --------->LBD16  --------->MYB46(3)     <---------ARR14(2) -----DEAR3(1)  <---------ANAC58     <---------LBD16    --------->DEAR3(2)     --------->ZAT14------- -----RAP2.3(2) <---------ANAC58  <---------ANAC58    <---------ARR14(2)       --------->ARR14(2)   < --->HVH21   ---------->CDC5      <---------ANAC58    --------->ARR14(2)   <-------TEIL <------NtERF2   ggcgcgtgttcttgctaagcgtggcgcaagacttgtgcttccggctagaagcgtcaaaaccgccgaggaaacaaaggctcgtatactgtcggagtttcct  23997600       <------ZmHOX2a(2)      --------->ARR11(3)      <---------ARR11(3)     <---------GLK1(1)     --------->GLK1(1)    ----------->ARR10  --------->LBD16 <---------ANAC46 =============HOX2a_HOX2a              -------->P                                                   - ->ZmHOX2a(1)                    <---------ZAT18        <---------ANAC46                         ---- -----------AGL1               --------->At4g35610      <---------ANAC58                <---------ATHB12 -ARR14(2)                     <---------At4g35610      <---------ANAC58               --------->ANAC58 =====RAV                  ------>ZmHOX2a(2)           <-------TEIL    <---------ARR11(1)    <------- ---->RAV1(2)<---------MYB52(1)<---------ZAT2        <---------ARR14(2)------->TEIL  <---------ALFIN1 ---------->AGL1         <---------ARR11(3)         <---------DEAR3(2)<---------GLK1(2)--------->ANAC58 ---------LBD16    ------->TEIL--------->ZAT2 <---------MYB52(1)      <---------CCA1(2)--------->ANAC46   gatgcggagatcatcgttatgcatcttgatctcagctcacttacctctgttcgtcgattcgtggacgatttcgaatctctcaatctcccactcaacatcc  23997700  Previous    Next  AGI:  At1g64590.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G24050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69477.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 23997196    to: 23999172    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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