Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ATERF1(2)                                                              <---------ATERF1(2)                                                              --------->ANAC46                                   <---------ANAC58           --------->ANAC58                                   <---------ANAC58          --------->RAP2.6(3)           ------>MYB83                                   <---------ANAC46          --------->SPL7                ------>MYB46(1)                             --------->HSFB2a(2)          <-----------RAV1(2)           --------->HSFB2a(1)                             <---------HSFB2a(2)   <---------ANAC58         --------->AtMYB61                            <---------LBD16        <---------ANAC46         <---------ALFIN1                    <---------At4g35610            <---------ANAC58     --------->ZAT18 <---------HSFB2a(1)  <---------At4g35610    <---------GLK1(1)         <-------GAMYB    <------ZmHOX2a(1)   --------->HSFC1(2)  --------->At4g35610    --------->GLK1(1)      <---------ANAC46<------NtERF2      --------->AtLEC2  <---------ZAT2    --------->At4g35610       --------->ALFIN1--------->ANAC58     --------->ANAC46 -----------RAV1(2)--------->GLK1(2) --------->ALFIN1   <-----------HVH21<-----------GT1<---------HSFC1(2)   gtgcaggtgagtcacgacgagcatctgatatcgggaagcgtggacgagttgtgggttgtgtcagacggcaggattgcaccattccatggaaccttccatg  23977000                                           <---------ANAC46                                        <---------CCA1(2)                                        --------->GLK1(1)                                       <----------DOF2                                     ------>NtERF2                                     <------NtERF2                                     --------->LBD16                                    --------->RRTF1(3)                                    --------->RAP2.3(3)                                    --------->DEAR3(1)                                    --------->RAP2.6(2)                                    --------->RRTF1(2)                                    --------->RAP2.3(2)                                   --------->ORA47(2)                                   --------->DEAR4(2)                                   --------->ATERF1(1)                                   --------->RAP2.3(1)                                   <------NtERF2                                  <---------ATERF1(1)                                  ------>NtERF2                                  <---------RAP2.3(1)              <---------ANAC58     --------->ANAC58                                 <---------DEAR3(1)                <---------ANAC46     <----------ID1       --------->HSFC1(2)       <---------ABI4(2)        --------->ARR14(2)             --------->ANAC58       --------->HSFB2a(1)   <---------ZAT2<---------ANAC58        <---------ANAC58     --------->ANAC46       <---------HSFB2a(1)   --------->At4g35610         <---------ARR14(2)      --------->TOE2(3)       <---------HSFC1(2)    --------->ZAT2<---------ANAC58   <-----------RAV1(1)--------->ANAC46   --------->ANAC46          <---------At4g35610     --------->LBD16         <-----------GT1   actacaagaagcttctccagtcttcaacttaagctgcgccgcatttcttgtattccccaaatccatgttgcgtttttgtttaccctcaatacgacacaag  23977100                       <------NtERF2                      ----------->RAV1(1)               <---------ARR14(2)               --------->GLK1(2)               --------->ARR14(2)         --------->TOE2(2)         --------->TOE1(2)         --------------->AGL15        ----------->RAV1(2)        <----------DOF2                                               ----        ==========================RAV         <---------TOE2(3)       --------->At5g28300      ------      <-----------GT1 ------>NtERF2<---------DAG2                    ----------->GT1           ------  ------>ZmHOX2a(1)  <---------ETT(2)         <---------TOE1(3)      <---------ZAT6     --------->ALFIN1  <----------DOF2    --------->ETT(2)  --------->ANAC55(2) ---------->DOF2   --------->YAB1    ------   agtcctttatacctgagaatttggcgacagtattttgctttatgtattaaggttgaaactaaaaagaaatactgtaaaatcatacacttggtggagcacg  23977200        <---------ARR14(2)        --------->ARR14(2)       <---------CCA1(2)     --------->YAB1    <-------TEIL <------ZmHOX2a(1)        --------->LBD16 ------>DOF2             <---------ANAC55(2)                                                   ------ --->ANAC46              --------->TOE2(3)                                                    <------ --->ANAC58              ----------->GT1                ---------->DOF2       <---------AHL20(2)<---- --->ANAC58          --------->YAB1              --------->YAB1      <---------ANAC46  <---------MYB52(2)   aaaggattcatatccaatgtgaatcatccgtaaaattgtaaacgagccaaattagaataaaagagcatgtttcgcagaaatttatggcaactaaaattca  23977300   <---------------AtSPL8                                                                ---------->DOF2 --->ATHB12<------ZmHOX2a(1)                                             ----------->RAV1(1)*TSS -TEIL <-------TEIL   ---------->DOF2         --------->ICU4          <-----------GT1  ------->GAMYB --------CBF   ----------->GT1         ---------->DOF2     <---------ANAC46         <-----------GT1   ttgtacaggtacaggaatagcaaaaaaagaacatgtaggcccaaagacaagattacaagttgtgttttttttttcccacatatgtttaaccgaaagaaaa  23977400   <-----------ARR10                                               ------>ZmHOX2a(1)   <---------ARR14(2)                                --------->LBD16     ------->TEIL   <---------ARR11(3)                         <---------YAB1      --------->TOE2(3)           <------   <---------ARR11(1)                        --------->ARR11(3)   --------->TOE1(3)    --------->ARR14(2)   --------->ARR11(3)      --------->MYB46(3)<---------ARR11(3)<---------ARR11(3)      <---------ARR14(2)   --------->ARR14(2)<-----------HVH21   <------ZmHOX2a(1)    --------->GLK1(1) <---------ANAC58    -  <---------CCA1(2) --------->DEAR3(1)<------ZmHOX2a(1)       <---------GLK1(1) <---------ANAC58    <   acccaaatcttcgaatcgagcaccgtcgaaccattaccgaggaggaatatcattccacaaatcgatatccttaagaacctctgcttgtggattcgattgt  23977500                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                    <-------GAMYB                                  --------->AGP1                                   <---------DEAR3(1)              <-----------GT1 <---------AGP1<---                                <---------ANAC58               <----------DOF2     <---------ARR11(3)           --------->ANAC46     <---------ANAC58          <---------ZAT2    --------->LBD16      <---    <---------ARR11(3)   <---------RAP2.6(3)              <---------At4g35610      --------->ARR11(3)    --------->ARR11(3)   <---------SPL7                   --------->At4g35610     <---------CCA1(2)-- ---MYB46(3)     <-----------HVH21 <---------MYB46(3) --------->GLK1(2)     ------>NtERF2        <--- -------->At4g35610     --------->RAP2.6(2)         <---------At4g35610    --------->ANAC46<---------ZAT14 ---------At4g35610  --------->ANAC46               <---------GLK1(1)     <---------LBD16  --------->ZAT14   tcagaagaactacaagactcttcaggccgtactagcgtcgttgcaaaacaatggagatgctgctgctttaaacaactccgccatagatcttggtgcagag  23977600                      ----------->RAV1(1)                  <----------ID1          <---------At4g35610    ----------->HVH21                  ---------->DOF2 ------ANAC58     <---------bZIP60(1)                            <------ZmHOX2a(1) ------ANAC58     --------->bZIP60(1)    --------->ARR11(3) ----------->HVH21 ------->ALFIN1   <---------ETT(2)     <---------YAB1       --------->ALFIN1        <---------REM1(1) ------ANAC46  ----------->TGA1  ----------->TGA1     --------->ALFIN1           --------->ALFIN1   <   cgtgggaatggaagatgatgacgacaacaaaatggatgacgatgatatagagatggatgggggtgaaggagaaagttatagatgtgttgaaggaatgtgg  23977700               <----------DOF2              ------>ZmHOX2a(2)             <------ZmHOX2a(2)             <---------RVE1(1)            <---------ARR11(3)            --------->ARR11(3)            --------->AGP1           <---------GLK1(1)           --------->GLK1(1)    <------ZmHOX2a(1)    =================HOX2a_HOX2a    ================HOX2a_HOX2a                                                            --------->ANAC46 --------->HSFB2a(2)               >>>>>>>>>>WRKY63                                        --------->ANAC55(2) <---------LBD16                 --------->ANAC58             <---------ANAC58             <---------ANAC55(2) <---------HSFB2a(2)      --------->YAB1                      <---------ANAC58        --------->ANAC46 ---------ANAC46  ---------->DOF2--------->ANAC58         <----------DOF2           <-----------GT1   tttcgaggagaagagatctttaaagctatcacaacaagtcaacaagagtttttgtatcgtctttccttgttcaacaagtctggtattcacttcacgtagt  23977800                               <-----------GT1                              <---------YAB1                                   --------->YAB1                              <---------AHL20(2)                              <---------ATHB12                             <---------AHL20(2)                               --------->MYB46(3)                           <---------YAB1                                    ------>MYB46(1)<--------                   <-----------GT1             --------->ZAT18               ------>MYB83   <--------             --------->HSFB2a(1)            --------->ALFIN1                --------->WOX13(1)  -----             <---------HSFB2a(1) <---------YAB1------->TEIL             --------->ZAT6      <--------       <---------ANAC46<----------DOF2     --------------->AtSPL8     <-----------GT1      <---------   agttttgtgatgggaacgttttgacctttatttttattatacagatgtgtaccctgttttcgattcaagttttaacaccaatcaccagaaggaagcgtga  23977900  Previous    Next  AGI:  At1g64550.1    Description:  ATGCN3 (Arabidopsis thaliana general control non-repressible 3). Identical to GCN20-type ATP-binding cassette protein GCN3 (GCN3) [Arabidopsis Thaliana] (GB:Q8H0V6;GB:Q9SGW1); similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to hypothetical protein OsI_009328 [Oryza sativa (indica cultivar-group)] (GB:EAY88095.1); similar to ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 [Physcomitrella patens subsp. patens] (GB:EDQ73984.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69480.1); contains InterPro domain ABC transporter related; Range:  from: 23972442    to: 23977277    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64560.1    Description:  pseudogene of S-adenosylmethionine-dependent methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA methyltransferase Range:  from: 23977392    to: 23977840    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64561.1    Description:  unknown protein Range:  from: 23977704    to: 23978438    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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