Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->CCA1(2)                                       <------ZmHOX2a(2)                                      <---------ARR14(2)                        --------->ANAC58                        --------->ANAC58------>ZmHOX2a(2)                  <---------ANAC58    <---------ARR11(3)                  <---------ANAC58    <-----------ARR10            <---------MYB46(3)        --------->ARR11(3)                                     <------- ----------DOF2   <---------ANAC46    --------->AGP1 --------->YAB1            ----------->GT1 -->YAB1   <---------AtMYB61          --------->ARR14(2)   <---------ICU4   ----------->GT1 --------- --->HVH21 --------->ALFIN1       ---------->DOF2  <-----------GT1<---------MYB52(1)        ---------   aactttgttcatggtggtggacgtgtaagaaacgtctaaagatctactctatataacataatcaattcgttttttgaaatgtgataaaaacaaaccttta  23962900 --------->ARR14(2) <---------ARR11(3)                              <-----------HVH21                                 <- <---------ARR14(2)                             <---------CCA1(2)                                <--- ---DOF2                            --------->AHL20(2)               <---------YAB1          <------- >TOE2(3)                           <---------AHL20(2)      --------->AHL20(2)              --------- >TOE1(3)                  ------->TEIL    <---------GLK1(2)<---------AHL20(2)         --------->YAB1   ccatatattcgcctctggcagaaacaatgcatttggaataaaatagaatcgtatcacagcatttaaaaacgattattcaaatagtctaatagtatttatt  23963000                                                               <---------ARR11(3)                                                           --------->YAB1   <----------DOF2                                        <---------ATHB12   <---------DAG2                                       --------->WOX13(1) --------ALFIN1                                       --------->WRKY18(1) --------GT1                                 --------->HSFB2a(2) --AHL20(2)                                  <---------HSFB2a(2) >ICU4           ------->TEIL   ---------->DOF2     ----------->GT1                  >>>>>>>>>>>>>>>>   cacacctttatgttttatgtatatcgaattttgtcaaagccaatattctagagatggtcaatcaatatcaatacagtttttttttttggccaatgttcta  23963100                                                                      --------->AHL20(2)                                                                   --------->AHL20(2)                <---------YAB1                                  <---------TOE2(3)              --------------->AGL15                          <---------YAB1              <---------------AGL15             ---------->ID1 ---------->DOF2              <---------ZAT6               <----------DOF2<---------AHL20(1)                  <------        <---------MYB46(3)                <---------DAG2  --------->AHL20(1)             --------->GLK1(2) >LFY------------>MYB.PH3(2)            ------>NtERF2  --------->AHL20(2)           ---------->DOF2   atattcaagtttgttagtattaatagaaaaacaaaatttcgatgccttttgtctcataaaaatattaaagaaaataatacaaagaataaagaatttgcat  23963200                       ----------->GT1                     <------MYB46(1)                     <------MYB83                   <--------P                 <---------MYB46(3)                                                ---------->DOF2                 --------->MYB55(2)                                           --------->TOE2(3)                 --------->ATHB12                                         <---------AHL20(2)        <---------RVE1(1)                          --------->ARR11(3)  --------->AHL20(1)       -----       <---------ARR11(3)             <---------ANAC58                --------->AHL20(2)  --------->AHL20(2)       <---------ARR14(2)             <---------ANAC46                <---------AHL20(2)  <---------AHL20(2)       --------->ARR14(2)             <---------ANAC58               <---------AHL20(2) --------->CCA1(2)       --------->ARR11(3)         --------->SPL7   <---------ARR11(3)--------->AHL20(2)--------->ARR11(3) ---AtLEC2--------->GLK1(2)   <---------------AtSPL8                 <---------AHL20(1)<---------ARR11(3)   gaaatgggagatattctagtggttggggtaaaatggtacagcgtggaatcaaatgtcttcaacaaaatcaaattattttatctcaaaaagatttaaatcc  23963300        --------->AHL20(1)                                                                         --       --------->YAB1                                                                              <-       --------->AHL20(2)                                      --------->At4g35610                 <-      <---------AHL20(2)                                       <---------At4g35610                 --  <---------AHL20(2)                                          --------->GLK1(2)                    <-  --------->AHL20(2)    *TSS       <-----------GT1    <-------GAMYB                                -- --------->AHL20(2)   <------------------------ANAC81<-----------RAV1(1)--------->At4g35610  -------- ------->CBF<-----------GT1  ------>ZmHOX2a(1)   <----------DOF2      --------->YAB1     <-----------   caatttaaataatattacaacttgtcttctcctcttatttcttctctctctctttctgttgaagaagctgaatcagaagagtttttttttgcttcaaaag  23963400               <---------HSFB2a(2)               <---------ANAC46               --------->HSFB2a(2)          --------->HSFB2a(1)          <---------HSFB2a(1)          --------->HSFC1(2)                                              <---------MYB46(3)         --------->ARR14(2)                                             <---------At4g35610     <---------------------WRI1                                         --------->At4g35610    --------->LBD16                                                  <---------ZAT2    ------>NtERF2                                                    <---------At4g35610   <---------DEAR3(1)                                                --------->At4g35610  <---------LBD16        <-----------GT1                            <-----------RAV1(1) ------->At4g35610   <---------RVE1(1)                            <---------At4g35610               - --------ZAT2 <---------LBD16                                    <-----------RAV1(1)               <- --------GLK1(1)    <---------ARR11(3)                         <----------DOF2                    <-- ------->ZAT2--------->MYB52(1)                            <---------ANAC55(1)                    <-- --------At4g35610  --------->ARR11(3)                     <---------ANAC58                       --- ------->GLK1(1)--------->LBD16     ----------->TGA1       --------->ANAC55(2)                    <-- -->DOF2 <---------ARR14(2)--------->ZAT6                  <---------ANAC55(2)                   <--- ----AGL15<---------HSFC1(2)        ----------->HVH21      <---------ANAC58<-------GAMYB     <-------   gagctccggcgaaacttccggagatattaacacttactctgacgagtttttgtctcgtcttacgtctttgctgctgctgttgatggaacttgacgacttg  23963500          <---------ANAC58          <---------ANAC58        <-----------ARR10        <---------ARR14(2)        --------->ARR14(2)      <---------MYB46(3)        <----------DOF2    <---------At4g35610     ===================================HOX2a_HOX2a    --------->At4g35610   --------->At4g35610 ----->ZmHOX2a(2)         <---------At4g35610 --------GLK1(1)       <------ZmHOX2a(2) -------AGP1      <---------MYB52(1) ---------ARR10  <---------RAP2.6(3) ------>ARR11(3) <-------GAMYB  <---------DAG2 -------ARR11(3) <-----------HVH21                                      ------>ZmHOX2a(1)   ------>ZmHOX2a(1) ------CCA1(2)  <---------MYB46(3)                      ------>ZmHOX2a(1)         <---------DAG2 --ANAC46<---------MYB46(3) <------ZmHOX2a(2)         ----------->RAV1(2)     --------->MYB46(3)   gatctcagcggttcttggccgttagatcagatcacttttgcttcaaatttcaagtctcctgtcattttctcttcctccgaacaacctttctctcctctct  23963600                             <---------RAP2.3(1)                             <---------ATERF1(1)                             <---------ERF1                            --------->ATERF1(2)                            <---------RAP2.3(2)                            <---------RAP2.3(3)                            <---------DEAR3(1)                            --------->DEAR3(1)                           --------->At4g35610                           <------NtERF2                           <---------ABI4(1)                           <---------At4g35610                           --------->ATERF1(1)                          <---------ATERF1(1)                          <---------DEAR3(2)                          <---------ORA47(2)                          <---------ERF1                          <---------RAP2.3(1)                          <---------RRTF1(1)                         <---------DEAR3(1)                         <---------RAP2.3(2)    <------NtERF2                         <---------RAP2.6(2)   <------NtERF2                         <---------At1g77200  --------->RRTF1(2)                         <---------RRTF1(3)   --------->RRTF1(3)                         <---------DEAR4(1)   --------->RAP2.3(2)                         <---------RRTF1(2)   --------->DEAR3(1)                         --------->ETT(1)     ----------->RAV1(1)                         <---------DREB2C(2) --------->RAP2.3(1)                         <---------RAP2.3(3) --------->RRTF1(1)                 --------->LBD16            --------->LBD16                --------->HSFB2a(2)         <---------ATERF1(1)                <---------HSFB2a(2) <----------DOF2    --------->PCF2          <---------ANAC58               <---------LBD16 --------->DEAR3(1)    <---------At4g35610       <---------ANAC46           <---------HSFC1(2)<---------DEAR4(2)------>NtERF2                   <---------ANAC58           --------->HSFB2a(1)<------NtERF2 --------->At4g35610            --------->KAN4(2)           --------->HSFC1(2)------>NtERF2  ------>NtERF2                 <---------KAN4(1)           <---------HSFB2a(1)--------->ATERF1(1)    --------->At4g35610  --------->KAN4(1)          --------->ARR14(2)<---------ATERF1(2)--------->LBD16   <-----------HVH21        --------->LBD16 --------->DDF1     --------->ANAC46 <---------ALFIN1<-----------GT1       --------->ANAC46<-----------HVH21   --------->DEAR3(1)    <----------DOF2  ------>ZmHOX2a(1) <---------At4g35610   <---------LBD16 <---------ALFIN1<---------ICU4--------->ANAC46   ggtccttctccgaaacttctggagatgtcggcggcgagctttactccgccgcagtagctcccactcgcttcaccgattattccgtcttactcgctagtaa  23963700                        --------->GLK1(2)                    <---------HSFC1(1)                    --------->HSFB2a(2)                    --------->HSFC1(1)            <---------YAB1                 --------->GLK1(2)             <---------ARR14(2)                           <--------                <---------GLK1(2)              --------->ARR14(2)                       <---------GLK1(2)              ----------->ARR10   <---------At4g35610              ----------->GT1--------->ATHB12    --------->AtLEC2<---------HSFB2a(2)   ----------->GT1    <---------LBD16    ------>ZmHOX2a(1)   gtcttcatgcaaagtttagattctagaatccaattcagataatgtagtgaatatgcttcaatctctggatagtaatattctccttcattggaatcttatt  23963800  Previous    Next  AGI:  At1g64530.1    Description:  RWP-RK domain-containing protein. similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G24020.1); similar to Os01g0236700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69486.1); similar to hypothetical protein OsI_001042 [Oryza sativa (indica cultivar-group)] (GB:EAY73195.1); contains InterPro domain Plant regulator RWP-RK (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p (InterPro:IPR000270) Range:  from: 23963324    to: 23966744    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version