Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->AHL20(2)                                               --------->AHL20(2)                                              <---------AHL20(2)                                           <---------AHL20(2)                                           --------->AHL20(2)                              <---------AHL20(2)   <---------AHL20(2)      <---------TOE2(3) --------->ANAC55(2)<---------AHL20(1)     <-----------GT1<----------DOF2        --------->AHL20(1) -------At4g35610  <---------ICU4         --------->YAB1                       ----------->GT1 ----At5g28300   <---------ARR11(3)       --------->AHL20(2)        <---------AHL20(2) -----GT1        --------->ARR11(3)      <---------YAB1            --------->AHL20(2)           -----   agcttattaacatttactaaatctttacatatttttatgtgttattatattatttaaattacacaaatattaaatcaaaaatggaaaatagagactaaga  23936600                                                                                                 <---                                                                                               ------                                                                                            ---------                                                                                            <--------                                                                                           --------->ICU4                                                                                           <---------YAB1                                      <---------AHL20(2)                                 <--------HAHB4                                      --------->AHL20(2)                                 <---------ICU4                            <------ZmHOX2a(2)                                         <---------ICU4                           --------->ARR11(3)                                         <--------HAHB4                 --------->AHL20(2) <----------DOF2                                  <---------YAB1     --------->ANAC58      <---------ARR11(3)                                       <-----------GT1     --------->ANAC46     <---------At4g35610                          <----------DOF2--------->YAB1<     --------->ANAC58     --------->At4g35610                          --------->TOE2(3)--------->ICU4 --------->CCA1(2)    <-----------HVH21       ----------->HVH21        --------->TOE1(3)<---------YAB1 ----->DOF2      <---------AHL20(2) --------->TOE2(3)    <---------AHL20(2)    <----------DOF2<------   aagaaatacgctaatcgattttaatgtcagatcattttctttaatttagtgacattgattttttttttttaaactttaaaactttttatcattattatta  23936700                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    *TSS                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                             ----------->GT1                                                        x                     <---------MYB46(3)                                                             x                    <---------WOX13(1)                                     <---------AHL20(2)       x                    <---------YAB1                                        --------->YAB1         <--- ------YAB1        >>>>>>>>>ARR2           --------->ANAC46              --------->AHL20(2)  <------- --->YAB1          >>>>>>>>>ARR1      <---------YAB1                --------->AHL20(2)      --------- >YAB1             <------------CBF <---------AHL20(2)         <---------AHL20(2)  --------->ANAC58 x -ICU4            --------->ATHB12 <---------AHL20(2) <---------ZAT14--------->AHL20(2)    <---------ATHB12 ---------REM1(1)<---------YAB1    --------->AHL20(2) --------->ZAT14<---------AHL20(2)------------>CBF ---YAB1 ---------->DOF2 --------->ATHB12  --------->ANAC55(2) --------->AHL20(2)  --------->ANAC58<-   tgatgtaagaaaaaagagtatgattgttgatttgttatttattatacataacacattatactgatttaaattaaaataaaaatgcaagcttcaatctttg  23936800       xxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------REM1(1)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1  <---------ZAT18 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(le3)                             ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------ALFIN1 xxxxxxxxxxxxxxxxxx>smallRNA(l2)                            --------->LBD16 xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                          --------->ANAC46 xxxxxxxxxxxxxxxxx>smallRNA(fl3)                           --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------ALFIN1 xxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(fl3)              <-------PIF5  --------->ANAC58 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ------->PIF5 <---------LBD16 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------LBD16--------->ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxx>smallRNA(le3)                  <---------AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->AHL20(1) ------ANAC46      --------->ZAT18   xxxxxxxxxxxxxxxx>smallRNA(le3)              --------->YAB1    -- ---DOF2        ---------->DOF2      xxxxxxxxxxxxxxxx>smallRNA(s)               <---------AHL20(2) <- >ATHB12    xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx>smallRNA(si3)       <---------AHL20(2)     <- xxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->AHL20(2)     -- --------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)--------->AHL20(2)   ggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccattccatttaaataataaattttgtgaca  23936900                        --------->SPL7                      <---------SPL7                      <-----------HVH21           ----------->GT1                          <---------AHL20(2)           ---------->DOF2 <---------MYB52(1)   <---------LBD16                         <---------AHL20(1)  <---------AHL20(2) --------->DEAR3(1)         <---------ANAC46                        <---------ARR11(3) ------->AHL20(1)    ------->GAMYB              <---------ANAC58                        --------->AHL20(1) --------ARR11(3)   --------->MYB46(3)          <---------ANAC58                   ------------>CBF --------AHL20(1)   --------->DEAR3(2)         <---------LBD16                ---------->DOF2 ------->AHL20(2) <-----------GT1      <-----------GT1               ---------->DOF2    --------->AHL20(2)   atattttatatcagaaagttcaaccgtccgattgttttttttttctgttttcgggtgaaaaatcgaaaacagaaagttcagaaagttcaatattttatat  23937000                                                  --------->ANAC58                                                  --------->ANAC58                            <------MYB83                                            <-----------GT1                                   -------                                           *TSS------->GAMYB                                <--------                                       <---------AHL20(1)                         <---------YAB1                          <---------AHL20(2)--------->MYB52(1)                   --------->TOE2(3)                    --------->ANAC55(2)--------->AHL20(1)                       --------->ATHB12                <----------DOF2        <---------AHL20(2)                       <--------HAHB4<------               <---------ICU4          --------->AHL20(2)                       --------->YAB1<------MYB46(1)             --------->ARR11(3)       <---------AHL20(2)                       <---------YAB1<-------             <---------ARR11(3)       --------->AHL20(2)              --------->AHL20(2)   <-------GAMYB   caaaaacatttactaaatctttacatatttttatgtgttattaaattaaccgaagcaatagatagaaccaaaaaaaatactatcattagagaccgttggt  23937100                                                 --------->DEAR3(1)                                              <---------ALFIN1                                              --------->DEAR3(1)                                              --------->AtMYB61                                             <---------MYB55(2)                                             --------->MYB46(3)                                           --------->AtMYB61                                     --------->HSFB2a(2) <<<<<<<<<TBF1                       <---------HSFB2a(2)                  <---------MYB52(1)       -- -->MYB52(2)                         --------->LBD16                    <---------DEAR3(1)       <--- -MYB52(1)                      <---------At4g35610       ------>ZmHOX2a(1)                 <-------- ---MYB46(3)                    --------->At4g35610      <---------ALFIN1--------->LBD16  <---------MYB52(1) --AtMYB61<----------DOF2<---------CCA1(2)--------->MYB46(3)           <---------LBD16  <---------YAB1   ttcttcttccctctttcttagcctctcgtttctcatctccgagaaccaccaccgatgctcctccgtcttcttcgccggtgattttgtcttccgattgtta  23937200                                             <---------ARR14(2)                                 --------->LBD16                                --------->ANAC46         <---------ANAC46       <---------HSFB2a(2)        <---------O2 <---------ATHB12               --------->HSFB2a(2)        --------->ANAC46                         < ------->WOX13(1)              <---------LBD16       --------->MYB46(3)                        <----- ------YAB1              <---------MYB52(1)  --------->ARR14(2)                       <---------CCA1(2) -MYB46(3)           ------>ZmHOX2a(1) --------->WOX13(1)  --------->O2  ----------------------->TaNAC69(2)   tcaatgagtcttcgtgtagtttcctccgttttctccggaatcaatcgaatccctaacctccacgagactcatactcttcttcgctctcatgtcttctctt  23937300                                                                                               <-----                                                                                           --------->DEAR3(1)                                                                                         ------>NtERF2                                                                                         --------->ABI4(1)                                                                                         <---------ATERF1(1)                                                                                         --------->LBD16                                                                                        --------->RAP2.3(2)                                                                                        --------->RAP2.3(3)                                                                                        --------->RAP2.6(2)                                                                                        --------->DEAR3(1)                                                                                        --------->ATERF1(2)                                                                                        <---------DEAR3(1)                                                                                        --------->RRTF1(3)                                                                                        <---------ATERF1(2)                                                                                        --------->RRTF1(2)                                                                                       --------->RRTF1(1)                                                                                       --------->RAP2.6(1)                                                                                       --------->ATERF1(1)                                                                                       --------->DEAR4(2)                                                                                       --------->ORA47(2)                                                                                       --------->ERF1                                                                                       --------->RAP2.3(1)                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      --------->ABI4(1)                                                                                      ------>NtERF2                                --------->DEAR3(1)                                    --------->LBD16                             --------->ANAC46                                         <---------ATERF1(1)                     <---------MYB52(1)                                              --------->DEAR3(1)                 --------->MYB52(1)                                                 --------->RAP2.3(1)                 --------->ARR14(2)                                                 --------->ATERF1(1)                 <---------ARR14(2)                                         <-----------RAV1(1)------               --------->ARR14(2)                                           <---------ZAT6<------NtERF2         --------->TOE2(2)<---------ZAT14                      --------->LBD16      <------NtERF2   <         --------->TOE1(2)--------->ARR14(2)       --------->YAB1 --------->ZAT2   <---------RAP2.3(1)        --------->DEAR3(2)--------->ZAT14         <---------ATHB12--------->At4g35610--------->ANAC46 <<<<<<<<TBF1  <---------ARR14(2)------>NtERF2   <-----------HVH21<---------ZAT2   <---------ATERF1(1) -----DOF2--------->LBD16 <---------ARR14(2)    --------->ANAC46  <---------At4g35610<---------ALFIN1   tcttcttcaaaccggcgaatatcggtagtatacggcgactggtcttatccccatcatatggagaccggagcagagatagtgttggctccgccgccgatgt  23937400                                        ------>NtERF2                                       --------->ANAC46                                      --------->MYB46(3)                                    <---------ARR14(2)                                    --------->ARR14(2)                             <---------At4g35610                             <---------ZAT2 <---------MYB52(1)                     <---------DEAR3(2)                             --------->At4g35610                              <---------YAB1                        --------->At4g35610<-------GAMYB                --------->ATHB12  <----------           <---------HSFB2a(2)     <---------CCA1(2)                   --------->ICU4<---------ARR14(2)           --------->HSFB2a(2)     <---------ARR14(1)             --------->ANAC58 <---------MYB46(3) ----HSFC1(2)          --------->GLK1(2)--------->LBD16   ---------->DOF2 <---------GLK1(1)       <-- --->HSFC1(2)  --------->DEAR3(1)<---------ANAC46<---------At4g35610   <---------YAB1--------->ARR14(2) -----------TGA1------>NtERF2--------->ZAT2<-----------HVH21      --------->ANAC58------>ZmHOX2a(2)<-   ttcgtcatctattctcgacgacgagcttctgagcagcgtatccgccgttagagatgccgatgaagcgctcgcgatgatttctgatcggttcgggtcaaat  23937500  Previous    Next  AGI:  At1g64420.1    Description:  pre-tRNA. tRNA-Ala (anticodon: CGC) Range:  from: 23936800    to: 23936872    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g64430.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO69536.1) Range:  from: 23937043    to: 23940529    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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