Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <---------ALFIN1                   --------->ZAT14                 --------->GLK1(2)     <---------AHL20(2)                  <---------ALFIN1      <---------ANAC58             <---------CCA1(1)            ===                  --------->AtMYB61     <---------ANAC58             <---------RVE1(1)            ---                 --------->ANAC58       <---------ANAC46            <---------ARR11(3)           <--- ------>AtSPL8   --------->ANAC58      <------NtERF2            <---------LBD16            <---------MYB46(3) --GT1  --------->AHL20(2)        <-----------RAV1(1)        <---------GLK1(1)  <---------AtLEC2 <xxx   ccccataccaaaaaatagcaccacacttgtctgaaattgttggcgagttggagaatcgagtagagctctggatatttattctgtatggatgagttgttga  23935500              <------NtERF2             ------>NtERF2                               --------->YAB1          <-----------HVH21                  <---------ZAT14         ------>ZmHOX2a(1)                  >>>>>>>>>>>>>>>>>LFY         <-----------RAV1(1)             <---------WOX13(1)                         <---------ARR11(3) ===============HOX2a_HOX2a            --------->ATHB12--------->ARR14(2)           --------->ARR11(3) --->ZmHOX2a(2)                       <---------YAB1  ------>ZmHOX2a(1)           ----------->ARR10 ------WOX13(1)              --------->KAN4(2)    <---------ZAT18      --------->ZAT14         <----- xxxxxxxxxxxxxxxxxsmallRNA(se3)   ------>ZmHOX2a(1)   <---------CCA1(2)<---------ZAT14     <---------   tcgatatagtcctgtcgccttagtcactgaaaattcctcgatgattgtccagtgtcctatcttcacatacctctgtagtttgagtagatgttcctttttt  23935600            --------->AHL20(2)            <---------AHL20(2)            <---------AHL20(1)                                                  <---------TOE1(3)            --------->AHL20(1)                                                  <---------TOE2(3)     <----------DOF2                                             --------->AHL20(2)    <---------ANAC46 --------->LBD16                 ----------->GT1            <---------YAB1  ------>ZmHOX2a(1) --------->LBD16                 <---------ZAT6---------->DOF2 ----AHL20(2)      <---------LBD16                  ----------->GT1       --------->MYB46(3)xxxxxxxxx -DOF2     --------->AHL20(2)           <---------ANAC55(2)      <---------AHL20(2)<---------YAB1 ---   attcctgcttgaattttatttccctgaaaatagcataagaaaacgtgaatgcgagagttaaaaacaattaaagacaaccattaagattatagacaaattg  23935700                                                                     -------->HAHB4                                                                     --------->ATHB12                                                                     <---------ICU4                                                                     <--------ATHB1                                                                    --------->ICU4                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ICU4                    <---------YAB1                          --------->At4g35610                     --------->YAB1                       --------->At4g35610            <---------ARR14(2)                       <---------At4g35610            <---------GLK1(2)                    ------>ZmHOX2a(1)                 --------->ARR14(2)         ----------->GT1                   --------->TOE2(3)               --------->HSFB2a(2)      --------->ANAC58          <---------ICU4  <---------At4g35610      <---------HSFB2a(2)      --------->ANAC46     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(se3)  --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ANAC58 ------->DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------HSFB2a(1)<---------LBD16 <---------   taaagcctaaaatacttacatcctcatctgctaacatcatttcataagacatcccagaacctttggtataatgattccacgcatggagaattttaacttg  23935800                                          --------->REM1(2)                                         <---------ANAC46                                     <---------At4g35610              <------MYB83  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                <---------- --------->ANAC46  ----------->GT1   --------->At4g35610          *TSS<------MYB46(1)   <---------AHL20(2) xxxxxx>smallRNA(si3)           <---------YAB1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <- --GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AtLEC2      <---------YAB1        --------->ICU4   aatacaccaagaggttttgaacggtttcaagtttttgatagctgtgtatggactcacttcatccattttgtttggttttgcagtgagtaatgaattggtt  23935900                           --------->ARR11(3)                           <---------ARR11(3)                         <---------TOE1(3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <---------ANAC46                         --------->MYB55(2)                    <---------ANAC58                        <---------ANAC46                    <---------ANAC58                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------GLK1(1)                       --------->ALFIN1                <---------ARR11(3)                    <---------ICU4          <-------TEIL   <---------TOE2(3)         --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------YAB1                  <---------GLK1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --CBF  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-----------TBP<---------MYB46(3)   --------->ARR11(3) --------YAB1   --------->ARR11(3)          --------->AHL20(2)<---------ANAC46    <---------ARR11(3)<   tatgagagaaggcacatagatatcgtgaaggtattcttactcacgtttatttataataagtgctgggtggattagatagatagagattttcgatttagat  23936000                                                                                          ------->TEIL                                                                              --------->ATHB51                                                                              <---------ICU4                                                                              -------->HAHB4             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                             --------->ATHB12          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <--------ATHB1   ------>ZmHOX2a(2)                                                         --------->AHL20(2)  <---  <------ZmHOX2a(2)                                                          <---------AHL20(2)  <--- --------->ARR11(3)                                                          <---------ATHB51    <--- <---------ARR11(3)                                                   ---------->DOF2     <---------- <---------ARR14(2)                                            --------->CCA1(2)          --------->ARR14(2) --------->AGP1                                               --------->ARR14(2)          <---------ARR14(2) <---------ARR14(3)                                           <---------ARR11(3)          <---------ARR11(1) --------->ARR14(3)                         <---------YAB1    --------->ARR11(3)         <---------CCA1(2) --------->ARR14(2)                         <---------AHL20(2)<---------ARR14(2)         <---------ARR14(1) ---------GLK1(1)             ----------->GT1             <------ZmHOX2a(1)  --------->ICU4  <-------   agagatcttcgatttgataagtgtgtttcgatttgttatatagaatattatttgttaagaggaagatataccaaaagaaataattgcaaacgtatctttg  23936100                --------->AHL20(2)             --------------->AGL15             <---------------AGL15            ----------------->AGL3       <---------ANAC55(2)      <---------ANAC58                   --------->ANAC55(2)      <---------ANAC46                  <-------TEIL      <---------ANAC58                 --------->ARR14(1)          <---------AHL20(1)              <-  <---------GLK1(1)                    --------->CCA1(2)           <---------AHL20(2)            ----  --------->CCA1(2)                   --------->ARR14(2)           --------->ARR11(3)        <------- ------ANAC46--------->YAB1           <---------ARR14(2)           --------->AHL20(1)        <------- ------ANAC58--------->TOE2(3)        --------->ARR11(1)           <---------ARR11(3)        -------- ------ANAC58--------->TOE1(3)    ---------->DOF2                  --------->AHL20(2)  >>>>>>>>>TAC1 -ARR10  --------->WRKY12     ----------->RAV1(1)            --------->YAB1           <---------ANAC46 ---DOF2 --------->WRKY38(1) <----------ID1                  <-----------GT1       <------NtERF2 <---   cgagaaatgcgtttaccataaattgttcaaaacaacaaaagatacgttttgcattttctcaaataacaatatattgttttgagtcgtcgagtgttttaat  23936200                                                                                         --------->ARR11(3)                                             <---------ARR11(3)                          <---------ARR11(3) --------YAB1                                <---------AHL20(2)               <---------YAB1 ----->AHL20(2)                              --------->ARR11(3)             <---------AHL20(2) --AHL20(2)          --------->TOE2(3)       --------->AHL20(1)             --------->AHL20(2) --YAB1      --------->ARR11(3)              <---------AHL20(1)         --------->AHL20(2) ->AHL20(2)  <---------ARR11(3)  --------->HSFB2a(2)                    <---------YAB1  --------->GLK1(1) ------AHL20(2)  ------>ZmHOX2a(1)           --------->AHL20(2)         <---------AHL20(2)        <xx   taatattcgtgataatatcctaacctttgcaacttctcaaacaacaatatattgttttgaagtcgacgagtgttttaattaatattcgtgatatctaata  23936300                                                   <---------WOX13(1)                                                --------->AHL20(2)                                                <---------AHL20(2)                  --------->ARR11(3)          --------->TOE2(3)                  <---------ARR14(2)        --------->ICU4         --------->ARR11(3)    <---------AHL20(2)<---------AHL20(2)       <---------YAB1          --------->AHL20(2)--------->ATHB12                            --------   ----------->GT1<---------ARR11(3)--------->ARR11(3)                                       <------- <---------ZAT14  --------->ARR14(2)<---------ARR11(3)                --------->YAB1  ---------->ID1 --------->ZAT14  <---------GLK1(2)--------->RVE1(1)     <---------ANAC55(2)     <----------DOF2 ---- xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->CCA1(1)     ----------->GT1 <-----------GT1     <-------   tagtatagtaagattatgcagattttgtgcaaaataaatatctctaaatattaattgataagtaaaactcaaaaataacattccttttgtcccaatatat  23936400  Previous    Next  AGI:  At1g64410.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT3G43350.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of u Range:  from: 23930056    to: 23935866    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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