Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                             <---------GLK1(2)                                                    <--                       ------->TEIL                     --------->At4g35610                      <---                       <---------ARR14(2)               <---------At4g35610                     <----                       --------->GLK1(2)          --------->TOE1(2)         --------->YAB1      <----                  ----------->GT1               ------->TEIL         --------->TOE2(3)  <---------ZAT6 ------>REM1(2)<---------AtLEC2                 <---------YAB1     <---------YAB1       ----------->GT1   tgaagaacaatgttcttgcaaggtgaatctagagtctcccctgttttatgaacattggagctcattgttatccttgaatattaatcggaagtgttatttt  23848200                                      <---------TOE1(2)                                     ------>ZmHOX2a(1)        ------>ZmHOX2a(2)         <------ZmHOX2a(2)        ====================================HOX2a_HOX2a   <---------WOX13(1)            <---------ARR11(3) --------->ATHB12                <---------GLK1(2) -------P                        <---------ARR14(2) --------WOX13(1)    <---------WOX13(1)    <-----------GT1                    <-----------GT1 -----GAMYB        --------->ATHB12------>ZmHOX2a(2)                     <------ZmHOX2a(1)        <-- ------MYB46(3)   <---------YAB1 --------->ARR14(2)                    <---------TOE2(2)      ------>ZmHOX2a(1) -----TOE2(3) <---------ANAC58   --------->ARR11(3)                    <---------TOE2(3) <---------GLK1(1) -----YAB1    <---------ANAC58   --------->AGP1                      --------->TOE1(2)   --------->GLK1(1)   ggttgattgatcgattgtttgtgattgaagaaacagatcctagtttttctgtatcagtaagtaagaagaaacttaggatttaacatgaagcatctcctta  23848300                                                                  <---------TOE1(3)                           ----------->HVH21                     <-----------RAV1(2)                        <---------ARR11(3)               --------->MYB52(1)               <---------DAG2                          <---------MYB52(2)            <---------ALFIN1 ---------->DOF2       <------ZmHOX2a(1)  <---------AHL20(2)    --------->ARR11(3)       <---------TOE2(3)<---------TOE2(3) ----ZmHOX2a(1)<----------DOF2               <---------ZAT6     <-------TEIL                   ------   ggatttattcatgcccactttaagaagacctgaaagttagagaactagacttaggaaacaaacaggttcaggtttatttgtatgtgaaaattcagtctgg  23848400                                             <------------CBF                <-----------HVH21           --------->ATHB51      ------>MYB46(1)                       --------->ATHB12      --------->ANAC58                     <---------YAB1                                        <---      --------->ANAC58               ----------->GT1                                        <--------      ------>MYB83                ------->TEIL                                     --------->MYB52(1) ----->GT1 --------->MYB52(1)    --------->MYB52(1)  ------->TEIL  --------------------->WRI1<-------   ttaaaaccaagctaaacgggttacccattactgatgaacgggtttattattgatgaacatatagttgggccttgttattttggcccaactgttttttatt  23848500                                         --------->TOE2(3)                                        --------->TGA1a                                        <---------TGA1a                                        ====================bZIP_DOF                                        --------->O2                                        <---------bZIP60(1)                                   --------->TOE1(3)                                --------->GLK1(1)                            <------NtERF2<-----------TGA1                           --------->LBD16                                                    -------                          --------->DEAR3(1)     ---------->DOF2                             <-------      <---------MYB52(1)------>NtERF2 --------->MYB52(1)                                     <-------   ---------->ID1      --------->DEAR3(1)<-----------HVH21                                   <------- ------AHL20(2)       --------->DEAR3(2)====================bZIP_DOF            <-----------GT1 -AHL20(2)       ------>ZmHOX2a(1) --------->TOE2(3)                    <-----------GT1  <---------GLK1(1) --AHL20(2)---------->ID1<---------LBD16--------->bZIP60(1)       ---------->DOF2  <----------DOF2   tttttgtcgttttgtcttcctcataccgccggagaaaccctaacgtcagagaaaagggtttgcatccccaaagtttacatttttacttttgaactccgtg  23848600                                              <---------HSFB2a(2)                               -----                                             <---------ANAC58                                   <----                                             <---------ANAC46                    <---------ARR14(2) -                                             <---------ANAC58                    --------->ARR14(2) -    <-------GAMYB                        <-------GAMYB                          <----------TaMYB80 <-   --------->MYB52(2)                   <-----------RAV1(1)                   <---------ANAC46  -----   <---------MYB46(3)               --------->ZAT14                      <---------ICU4        <----- -->LBD16                           <---------ZAT14           <---------TOE2(3)---------->TaMYB80  <- --ANAC46                         <---------MYB52(1)<---------MYB46(3)   --------->MYB52(1)    ------ --ANAC58<---------ZAT18         --------->LBD16 ------------>AtMYB77   --------->ICU4         ------ --ANAC58<---------At4g35610   <---------LBD16--------->HSFB2a(2)   --------->ZAT18    <---------YAB1   caggtttgttgtgctcatgtctgaagtaaatgttccggtgttctgttgctggaacggttgcatcaaggatggcactaatggcatatactatgaagggtcc  23848700                                                                                                <----                                                                                                ----- ------->ATHB5                                                                                  <---- -----------AGL15                                                                               <---- -------->AHL20(2)                                                                             ------ -------->YAB1                                    =====================================HOX2a_HOX2a --------ATHB51                                   <------ZmHOX2a(2)                    ============== ---------->AGL15                            <---------ANAC58                          <------ZmHOX2a(2) ------------AGL3                    <---------TOE2(3)                                <---------ARR11(3) --------ATHB12                <---------TOE2(3) <---------ARR11(3)             <------ZmHOX2a(1) ----------->AGL3      ---------->DOF2       <---------ANAC58                   ==============HOX2a_HOX2a ----------->AGL2--------->REM1(2)  <-----------GT1  --------->At4g35610     --------->CCA1(2) ------   aattatagaatgaccactgtgaagggaaagactaagtttaacgaattgctggatcatctgtatcaagttactgggttagataggaagagatcaaagtttg  23848800                      <---------RVE1(1)                      --------->GLK1(1)                     <---------ARR11(3)                     --------->ARR11(3)                     --------->ARR14(2)                     <---------GLK1(2)                     <---------ARR14(2)            <---------ARR11(3)          --------->ARR14(2)                                       --------->ANAC58          <---------ARR14(2)                                       --------->ANAC58 --MYB83  --------->ARR11(3)                    <-----------GT1    --------->ANAC46 ------>GT1--------->GLK1(1)              ----------->GT1         --------->SPL7 -----ANAC46--------->ARR11(3)            <---------ANAC46      <XXXXXXXXXXXXXXXXXXXXMIR401 --MYB46(1)<---------GLK1(1)              <---------ANAC55(2)<---------MYB46(3) --->MYB59<---------ARR11(3)         <---------ZAT6         --------->ALFIN1             <---------ANAC58 ======================HOX2a_HOX2a  <---------TOE1(3)      --------->LBD16               <---------ANAC58 --->MYB46(2)   ------>ZmHOX2a(1)   <---------TOE2(3)     <---------ANAC46             <---------YAB1   gtataatcggtagatatcctacagatattcaagcgtttagggttaagtataaacctcttcccgtggtggacgacactagtttggagactatgcttgagat  23848900            ------>ZmHOX2a(1)           --------->TOE2(3)      <---------ATHB12         <-----------------AGL3     ------>MYB46(1)          <---------ANAC46                            --------->TOE1(2)     ------>MYB83           <---------WRKY18(1)                          ------>ZmHOX2a(2)   ------->GAMYB           --------->WRKY12                            --------->ARR11(3)   --------->AtMYB61       --------->WRKY38(1)                    --------->ATHB12   <---------MYB59 ---------->DOF2                         <---------MYB52(1)  --------->MYB46(3)   --------->ARR11(3)                <---------MYB46(3)------>ZmHOX2a(1) <-------   tacaaccaaacatccttatattaaagacattgacctgtatttggaagtggaatcgacatccgttggagttattgatcctgctacttgttcatcgccttca  23849000                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                        --------->ALFIN1                                                                                        <------NtERF2                          <---------At4g35610                                         <---------ANAC46                          --------->At4g35610                                         <---------ANAC58                 --------->HSFB2a(2)                                                  <---------bZIP60(2)                 <---------HSFB2a(2)                                             <---------At4g35610           <---------ARR14(2)                                                    --------->At4g35610<         <---------MYB46(3)                                                    <-----------RAV1(2)  < --------->GLK1(2) ---------->DOF2                                  <---------GLK1(2) <---------ANAC58 ----HVH21 --------->ARR14(2)         <-------TEIL           <---------ANAC46--------->GLK1(2)     <-   gacattcttggtggttcttcgaaaagacagaagaccgatatacatgttaagttagagagggagacggatagaaactcagaatcagatggcgtggtacact  23849100  Previous    Next  AGI:  At1g64255.1    Description:  SWIM zinc finger family protein. similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G64260.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G49920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74432.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Transposase, MuDR, plant (InterPro:IPR004332); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) Range:  from: 23848617    to: 23850869    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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