Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ------>ZmHOX2a(2)                                                                                       --------->At4g35610                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR14(2)                                                                                      --------->GLK1(2)                                                                                      <-----------ARR10                                                                             <---------TOE2(3)<------                                                                      ---------->DOF2 <---------AGP1                                  <------ZmHOX2a(2)             --------->At4g35610   --------->ARR11(3)                                  --------->CCA1(2)             ----------->GT1       <---------ARR14(2)   ---------->DOF2                ===================================HOX2a_HOX2a      <---------ARR11(3) --------->GT1                   --------->ARR11(3)            --------->ALFIN1      <------ZmHOX2a(1) ------>DAG2                     --------->ARR14(2)           ================================HOX2a_HOX2a ------>DOF2                     <---------ARR11(3)           <------ZmHOX2a(1)    <---------TOE2(3) >GT1                            <---------ARR14(2)           =================================HOX2a_HOX2a   aaagtaaaagcatctaagaagaacattacgaagaagatccaatttgtggattaaacgggagagaggaggtgaaaaagatgaggtttaggatctgagttca  23836800         --------->ICU4         <---------YAB1                                                            --------->ARR11(3)       --------->YAB1                                                              --------->ARR14(3)      <---------YAB1                                               <------MYB46(1) <---------ARR11(3)    --------->YAB1                                                 <------MYB83--------->REM1(2)   <---------ATHB12                              <----------DOF2  <---------MYB46(3)   --------->ICU4                               <---------ANAC58 <--------P --------->TOE2(3)  ------ <---------At4g35610                       <----------DOF2--------->ICU4  <---------ATHB12  <-------- -TEIL--------->ICU4       --------->TOE2(3)    <---------ANAC58 <---------MYB52(1)<---------ARR14(3)   tgccgatgatgatgatcagagggatgaaaccatagtgagtcgcgactttggctttctgtaatgaccagttggtccaatccttgaagaccttgtactttga  23836900                                                                             <------NtERF2                                                                            ------>NtERF2                                                                            <---------RAP2.6(3)                                                                           --------->RAP2.3(2)                                                                           --------->ANAC46                                                                           --------->RAP2.3(3)                                                                           >>>>>>>>>AtERF-1                                                                           >>>>>>>>>AtERF-2                                                                           --------->RAP2.6(2)                                                                           --------->DEAR3(1)                      --------->YAB1                                       >>>>>>>>>AtERF-4                     --------->ICU4                                        >>>>>>>>>AtERF-5                     <---------YAB1                      ------>ZmHOX2a(2) >>>>>>>>>AtERF-3          =========================HOX2a_HOX2a         --------->ARR11(3) --------->ERF1   ------>ZmHOX2a(2)          <------ZmHOX2a(1)                 <---------ANAC58              --------->RAP2.3(1)       <------ZmHOX2a(1)       <----------DOF2         <---------ARR11(3)<---------At4g35610    <---------At4g35610     ------>ZmHOX2a(2)<----------DOF2             --------->At4g35610 --->YAB1<----------ID1 <---------YAB1      <---------ANAC58        <----------DOF2<---------GLK1(2) --DOF2============================HOX2a_HOX2a     <----------DOF2------->TEIL   <---------ATHB12----   tgatgcagaggaggacgaagatgatgatgatccctttgatggttttgctttgcctttgatcttcaacgtacttttagccgccattgattctgatctcaga  23837000                                                                                   ---------->DOF2                                                           --------->TOE1(3)    <-----------TBP                            <-----------HVH21              --------->TOE2(3)  <----------DOF2                   <---------CCA1(2)       <---------At4g35610             ------->TEIL ----->GLK1(1)  <---------At4g35610        --------->At4g35610---------->DOF2<---------DAG2   actctctctctctctctctgcttatctctgtgtcagagtcgatttagctggaagacaaaaaccctaaagggtttaagcacctttttaaagcctctatgaa  23837100                                                          <---------GLK1(2)                                                         -------->HAHB4                                                         <---------ICU4                                                         <--------ATHB1                        <-----                                   <---------AHL20(2)   <---------YAB1                       --------                              <---------AHL20(2)      --------->YAB1                         <-------                              <---------YAB1          <---------ICU4                     --------->ATHB51                       <---------MYB52(1)            <---------ATHB12                    --------->AHL20(2)                      ------>ZmHOX2a(1)              <---------ATHB51            --------->At4g35610                      <----------DOF2     <---------YAB1--------->ICU4   ----------->GT1--------->ICU4                  <---------ARR14(2)---------->DOF2  --------->ICU4<---------ANAC58     <---------YAB1                  <---------PCF2 <---------YAB1  ------------>CBF  <---------ANAC58   --------->YAB1   acactctgtctaactcagagggtcctttattttttattaaaagtatgtttatccaataatgattctctggctcgctggaaaatagctgtcattatttata  23837200                                                                                                   --                                                                                                  ---                <---------AHL20(2)                ---------->DOF2                               -----               <---------AHL20(1)           <------MYB83                                        <----       <-------TEIL  *TSS    <----------DOF2<------MYB46(1)                       <---------At4g35610 ----YAB1      --------->AHL20(1)          --------->MYB59                        --------->At4g35610 ->AHL20(2)    <---------AHL20(2)         <---------MYB55(1)                 --------->YAB1---------- --AHL20(2)    --------->AHL20(2)        <---------MYB52(1)         <----------DOF2      <------ZmHOX2a(1)   tttgaagcatacataaataaaatttctctctctttgtttattcgttaggtctcaaaggctctctctgtctctttctcaaaaatcatctgcaggaagtgaa  23837300                              ----------->GT1                             <---------TOE2(3)                         <---------ANAC58                         <---------ANAC58                     ==================================HOX2a_HOX2a                     ------>ZmHOX2a(2)                                                        -------                    ===================================HOX2a_HOX2a                    <-------GAMYB--                    <------ZmHOX2a(2)           ------>ZmHOX2a(1)                    <---------MYB46(3)                   <---------AGP1               <----------DOF2                      --------->MYB52(2)                   --------->GLK1(2)           --------->TOE2(3)               <----------DOF2<------                   <-----------ARR10          ----------------->AG       <----------DOF2   <-------GAMYB ------->TOE2(3)   <---------ARR14(2)         ----------------->AGL1     <---------DAG2   <---------ANAC46 -------->GT1      --------->ARR11(3)         <-----------------AG      <---------ANAC58  <---------ANAC58 ---->ARR14(2)     --------->ARR14(2)         ----------------->AGL2    <---------ANAC58  <---------ANAC58 -----ARR14(2)     <---------ARR11(3)--------->DAG2                --------->TOE2(3) <-----------RAV1(1) ->GT1            <------ZmHOX2a(1) ---------->DOF2          <-----------GT1   --------------------->WRI1   tcgtcaaaaccgagtttggaggatctgtcttgaggtaaaaaagctcaatcctttatcggaaattttcaacctttgcttttcctttgtttgttgcgttgct  23837400                                                                                                   --                                                                                                   ==                                                                                                  ===                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                          <---------HSFB2a(2)                                                                                          --------->HSFB2a(2)                                                                                         <---------LBD16                                                                    =================================                                                                    ------>ZmHOX2a(2)  ------>ZmHOX2a(2)                                                                   ==================================                                                                   <------ZmHOX2a(2)   ==============                                                                  --------->ARR14(2)   ==============                                                                  <---------ARR11(3)  ===============                                                                  --------->ARR14(3)  ===============                                                                  <---------ARR14(3)  <---------GLK1(1)                                                                  <---------ARR14(2)  --------->GLK1(1)                                                                  --------->ARR11(3)  <------ZmHOX2a(2)                           <---------HSFB2a(2)                    --------->GLK1(2)   ===============                           --------->HSFB2a(2)                   ============================HOX2a_HOX2a                        <---------ARR14(2)                       =============================HOX2a_HOX2a                        <---------AGP1                           <------ZmHOX2a(1)   <---------ARR11(3)                        --------->ARR11(3)                 <---------HSFB2a(2)       --------->ARR14(3)                        --------->ARR14(2)             <---------ANAC58              --------->ARR14(2)              <------MYB83------>ZmHOX2a(2)            <---------ANAC58              <---------ARR14(2) -->At4g35610 <------MYB46(1)              <-------GAMYB   --------->HSFB2a(2)       --------->ARR11(3) ----->TEIL  --------->MYB59              <---------MYB46(3) ---------->DOF2 --------->At4g35610<---- ---At4g35610<---------AtMYB61<------ZmHOX2a(1)        <---------ANAC46 ---------->DOF2==============   gaatctatctagggtttggttttttggatctaggagtttttttttggttgagaaatggcttcgaaaaggatcttgaaagagctcaaggatctccagaagg  23837500            --------->ZAT14            <---------ZAT14           ------>ZmHOX2a(1) ------>ZmHOX2a(1) ---->ZmHOX2a(2) =================HOX2a_HOX2a =================HOX2a_HOX2a ----ZmHOX2a(2) ------ARR11(3) ----->ARR11(3) ----->ARR14(2) ------ARR14(2) ----HSFC1(2) --->HSFB2a(1) ----HSFB2a(1) --->HSFC1(2)                                                                                 <------ ==HOX2a_HOX2a                                                                              --------- ==HOX2a_HOX2a                                                                      ------>ZmHOX2a(2) ==HOX2a_HOX2a                                                                     <------ZmHOX2a(2) =================HOX2a_HOX2a                                                     <---------AGP1 =======HOX2a_HOX2a         <----------DOF2      <---------ANAC58                 --------->ARR11(3) =================HOX2a_HOX2a <-----------GT1    <---------ANAC58                 <---------ARR11(3) ==HOX2a_HOX2a        <--------P          ----------->GT1              <----------DOF2   --------->YAB1 --ZmHOX2a(1)   --------->ALFIN1       ------>ZmHOX2a(1)   ------>ZmHOX2a(2)      --------->AGP1<---- =======HOX2a_HOX2a <---------MYB46(3) ===========================HOX2a_HOX2a    <---------CCA1(2)<--   atcctccaacttcctgcagtgctggttagtctttacctctcctctcgtaaatcgtgtctgatctatttttgagctttgttgttagatcttataatcttat  23837600                                                                         ----------->GT1                                                                        --------->ALFIN1                                                                     <---------AtMYB61                                                                 ------>ZmHOX2a(2)            -------                                                                <------ZmHOX2a(2)             <------                                                               --------->AGP1 <---------WOX13(1)                                                               --------->ARR14(2)           <--------  --------->ANAC58                                             <---------ARR14(2)   <---------MYB52(1)  --------->ANAC58                                             <---------ARR11(3)  <---------RAP2.6(3) ---CCA1(2)            <----------DOF2                         --------->ARR11(3)  --------->At4g35610 >TOE2(3)           <---------ARR11(3)    <---------AHL20(2)   --------->ARR14(3)  ------>NtERF2----- -----YAB1  --------->AHL20(2)           --------->AHL20(2)    <---------ARR14(3)  <---------At4g35610 --------DOF2       --------->ARR11(3)   <---------AHL20(2)   <---------GLK1(1)  <---------RAP2.6(2)   ctttaagcaaacaaaaaaatgaaatcttttttagtcttcgtaattttataacgaagttatctagagatcttgaggtggtaattgccgctaagttatgatc  23837700  Previous    Next  AGI:  At1g64220.1    Description:  TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2); P-P-bond-hydrolysis-driven protein transmembrane transporter. Identical to Mitochondrial import receptor subunit TOM7-2 (TOM7-2) [Arabidopsis Thaliana] (GB:Q3ECI7); similar to mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) [Arabidopsis thaliana] (TAIR:AT5G41685.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41705.1); contains InterPro domain Mitochondrial import translocase, subunit Tom7; (InterPro:IPR012621) Range:  from: 23836751    to: 23836984    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g64230.1    Description:  UBC28; ubiquitin-protein ligase. Identical to SUMO-conjugating enzyme UBC9 (UBC9) [Arabidopsis Thaliana] (GB:P35132;GB:Q42014;GB:Q8RXQ0;GB:Q9FPH9); similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.1); similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to hypothetical protein OsI_006511 [Oryza sativa (indica cultivar-group)] (GB:EAY85278.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 23837221    to: 23839175    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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