Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->AHL20(2)                                                                       <---------AHL20(2)                                                              --------->DAG2          --------->ZAT18                                    ---------->DOF2<---------AHL20(2)      <-----------RAV1(1)                                 --------------->AGL15  <-----------GT1                                         <---------------AGL15 -------->CCA1(2)                                         =========================================== --------ARR11(3)                       <---------YAB1    --------->TOE2(3)<---------AHL20(2) ------->ARR11(3)                     ----------->GT1    ----------------->AGL1   <---------GLK1(1) >ZmHOX2a(1)  --------->ICU4  <----------DOF2        <---------MYB52(1)--------->AHL20(2)   <--------   agatttacatgttgcactgattttggtgtcatctttcacattgttatttatctccgttttccataaagtgtatttaaataaatgagttcccctagtttta  23794800                  ----------->GT1                 <---------TOE2(3)              <---------YAB1            --------------->AGL15                                             <---------YAB1           <---------ATHB12                                           <------ZmHOX2a(2)     --------->ZAT18                                    <---------ANAC55(2)   <---------TOE2(3) ===========================MADS_MADS                   --------->ANAC55(2)<---------ATHB51         - -ZAT6     --------->MYB46(3)                  <---------YAB1   --------->MYB52(1)      <---------YAB1   gtgcaagtgtgcaaccattaatgtaaaacgtagacatatgtagaagtttatttttgacatgtaatctaagggatcaaattatggatgattctgtttgtag  23794900                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                           --------->ICU4                                                                                         --------->AHL20(2)                                                                                         <--------ATHB1                                                                                         --------->YAB1                                                                                         --------->ATHB51                                                                                         <---------AHL20(1)                                                                                         <---------ICU4                                                                                        --------->ICU4                                                       <---------GLK1(2)                <---------ATHB51                                                       --------->ARR14(2)               <---------ATHB12                          <----------DOF2              <---------ARR14(2)           ------------>CBF-                 <---------YAB1                  ----------->HVH21               --------->DEAR3(1)<- --------->DOF2--------->YAB1               <-------TEIL--------->GLK1(2)       --------->ANAC46  ---   tttaaagacacattctattatgattctgcattttgggacttgaatatacatttgacagattcttgtaagtgaaacttgttacacagcccaataattttga  23795000             ----------->GT1        ---------->DOF2    <---------ANAC46 --------->ALFIN1                                                                                 <-- ---------LBD16          --------->ZAT18                                                          <-- --------ANAC58          <---------ZAT18                                                    <-------- --------ANAC46       <------------CBF                                           <---------bZIP60(1) -------->LBD16     --------->AHL20(2)                 <-----------GT1           --------->bZIP60(1) --------ANAC58     <---------AHL20(2)            <---------ARR11(3)       --------->MYB52(1)     === --->ZmHOX2a(2)    --------->AHL20(2)      --------->YAB1        --------->At4g35610       --------->AHL20(2)   tccgtgggggaaaagaggttatttaattgcactaaaatttagaaataagaacgatattaacttcagtagctccaacttaactgatgtcaaaatttaacta  23795100                                                                                                  ---                                                                                              -------                                                                                             <-------                                                                                            ---------                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                          --------->ORA47(1)                                                                                         <---------MYB46(2)                                                                                         <---------MYB59                                                                                         --------->MYB46(3)                                                                                   <---------------AtSPL3                                                      <------MYB46(1)            <---------WRKY38(1)                                                      <------MYB83               <---------WRKY12----             ----------->GT1                         --------->MYB59            ------------>CBF <---           ----------->GT1                        <---------At4g35610           --------->WRKY18(1)      <----------ID1                              --------->At4g35610          <-----------HVH21<----   ---------->DOF2            --------->At4g35610 <---------ZAT2          <-----------GT1<---------MYB111(1) ---------------AG    <----------DOF2           <---------WRKY12       --------->TOE2(3) --------->DEAR3(1) -------ZAT6 <----------ID1   <-------GAMYB   <-----------HVH21        --------->TOE1(3)--------->DEAR3(2) ---GT1  ---------->DOF2      <---------At4g35610 --------->ZAT2       --------->YAB1  ------->TEIL ====================================================================================================   gacttaaaaggaaaagagaaaaaactttattcagttggcaaaaccagaggtcagctaggtccgactagattaatcttaaccggtcaatgtaccgaccaat  23795200                                           --------->YAB1                                      --------->ZAT18                         <---------------AtSPL8                                      --------->ZAT14                      --------->AHL20(2)<------- ------>MYB52(1)                      <---------ZAT18            <---------ZAT18         ------>ZmHOX2a(1) -->WOX13(1)                          <-------TEIL  <---------ZAT14        <---------AHL20(2)<------- ----------AGL3                    <---------ANAC55(2)           --------->ZAT18  --------->ZAT18 --->CBF ---------->ID1           --------------->AtSPL8         ----------->HVH21<---------ZAT18 ----->AHL20(2)                   <---------------AtSPL8       --------->ZAT2 --------------->AtSPL8 ------AHL20(2)               <---------------AtSPL3--------->ZAT14 <---------ALFIN1 --------->ANAC46 -----ATHB12     <---------YAB1   --------------->AtSPL3       --------->At4g35610--------->ZAT14 ==========MADS_MADS  <---------ARR11(3)   <---------ICU4      <---------At4g35610<---------ZAT14   taatggaacctgtcgttttctgattatctcttatagtacgtacactcatgactctacagtctcagagctcacactgtttaaatgtacactcctctatggt  23795300                                                                  --------->ALFIN1       --------->HSFB2a(2)                           --------->ANAC55(1)       <---------HSFB2a(2)              <---------HSFB2a(2)      <------NtERF2   --------->GLK1(1)                    --------->HSFB2a(2)    <---------DEAR3(1)  --------->ARR11(3)                --------->GLK1(1)--------->ANAC58                               <  <---------ARR11(3)       ---------->DOF2  ----------->GT1<-----------RAV1(2)                      < --TOE2(3)      --------->ZAT18    --------->ARR11(3)--------->ANAC46               <------ZmHOX2a(1) --TOE1(3)   --------->ALFIN1      <---------ARR11(3)--------->ANAC58         --------->ZAT6 <-------TEIL   tagagatatcgagaagtgtgaacaaaaaacaaagagagatatcgagaagaaaaacacgaaatcaggcggtgttagattgaacagtaggagactgattcat  23795400               ----------->GT1              --------->DAG2              <---------------AtSPL8            ---------->DOF2         ------>NtERF2         --------->LBD16                                                                  <---------ICU4        --------->DEAR3(1)                                                                --------->ATHB51       <------NtERF2                                                                     --------->ICU4      ------>NtERF2                            <-----------GT1                   <---------MYB46(3)     <---------DEAR3(1)              ----------->HVH21          <---------ARR14(2)       <---------YAB1   <-----------HVH21                 --------->WRKY12           --------->ARR14(2)    <---------YAB1  <-----------RAV1(1)                --------->WRKY45          <------ZmHOX2a(1)--------->ALFIN1 ---------ANAC58  <-------TEIL       --------->WRKY38(1)  <------ZmHOX2a(1)  --------->DAG2 ---------ANAC58<----------ID1     <----------DOF2<----------DOF2           ---------->DOF2      ----   ggtcgtgtcgccgagaaaggtacaaagagtctgccttctttgacccaagttacttttgaaggagaggaactgaaattgaaaagtggttctcattatttca  23795500                                                                   <---------WOX13(1)                                                                  <---------ANAC58                                                                  <---------ANAC58                                                         --------->ANAC46                                              ---------->ID1     --------->ATHB12                                          ------>ZmHOX2a(2)   --------->At4g35610                                         <------ZmHOX2a(2)    <---------At4g35610                                        <---------AGP1   --------->ANAC58                                        --------->ARR11(3)    <-------GAMYB      <---------WOX13(1)                 --------->ATHB12      <---------CCA1(2) --------->ANAC58 ---------->DOF2          <---------bZIP60(1)         ----------->ARR10 --------->RAP2.6(3)--------->DAG2          --------->bZIP60(1)     ----------->GT1     <---------REM1(2)  <---------ATHB12 ------>DOF2  --------------------->WRI1<---------ARR11(3)   <---------MYB46(3)--------->ATHB12   aaagcttagatgatgccattgatttcttcgattacatggttagatctcgtcccttctatacggcagttgattgcaataaagtaattggtgtcttcgtgag  23795600                                           <---------ARR14(2)                                           --------->ARR14(2)                                          <---------GLK1(1)                                       ----------->GT1          --------->ARR11(3)                                --------->LBD16           --------->ANAC46             --------->AHL20(2)                               <---------HSFB2a(2)  <---------ARR14(2)          --------->GLK1(2)                              <---------LBD16       --------->ARR14(2) <---------At4g35610            <-----------RAV1(1)--------->HSFB2a(2)--------->LBD16      --------->At4g35610  ------->TEIL               --------->MYB52(1) <---------LBD16 <---------ARR11(3) <---------YAB1   aatgaatcgtcccgatgttgcgatttctctctaccggaagatggaaattcgccggattccacttaatatctacagcttcaatattctgataaaatgtttc  23795700  Previous    Next  AGI:  At1g64100.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); similar to pentatricopeptide repeat protein [Raphanus sativus] (GB:BAF73724.1); similar to restorer-of-fertility [Raphanus sativus] (GB:ABO70667.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23795248    to: 23797304    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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