Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                <----                                                                                               ------                                                                                               <-----                                   <---------AHL20(2)                                        <-------                 --------->ZAT6    --------->AHL20(2)                                     <---------MYB52(1)              <---------AHL20(2) <---------YAB1                                         ----------->GT1              --------->AHL20(2)<---------AHL20(1)                                   ------------>MYB.PH3(1)     <---------ZAT6           <---------AHL20(2)                                    --------->DAG2  >>>>>>>ZML2--------->AHL20(2) <---------AHL20(2)                                 ---------->DOF2  <   tgttctagtgacaaaattaatactaaatctatattatttttatattttagacttaaatctatatttgtcaaaaaaaaaaaaaaaaaaaagctgttatttt  23792600                                                             --------->YAB1       --------->ANAC46                                      <---------ICU4 ----->YAB1                                                 <---------YAB1 -----YAB1 <-----------------AGL1                     --------->ARR11(3) --->AHL20(2)                                         <---------ARR11(3) ----AHL20(2)                                         <-----------ARR10 --YAB1--------->ANAC55(2)                         --------->AHL20(2)               ------>ZmHOX2a(2) -----------GT1       <----------DOF2<---------YAB1<---------AHL20(2)            --------->YAB1   tataacttcacttaacctattgggctttccctcaagtttcttattggcccaaataaaatctcatcatagcatcgtctattctatgatccctataaacaaa  23792700                                                            --------->WRKY38(1)                                                          --------->ZAT2                                                          --------->At4g35610                                                         --------->ALFIN1                                                        ------->PIF5                                                        <-------PIF5                                                       <---------ANAC58                                                       <---------ANAC46                  <---------O2                         <---------ANAC58                ----------->TGA1                  --------->O2                         <---------bZIP60(2)           ------->GAMYB                  --------->bZIP60(1)     <---------HSFB2a(2)                     --------->MYB52(1)                  <---------bZIP60(1)     --------->HSFB2a(2)                   <---------MYB52(2)               --------->ANAC46     -------->P       ------>NtERF2            --------->REM1(1)               ----------->HVH21    ------->TEIL  ------>NtERF2              <---------ZAT14       <-              --------->SPL7     --------->At4g35610--------->DEAR3(1)   --------->ANAC46   ---------            --------->TOE1(2)--------->ANAC58    --------->DEAR3(1)      --------->ANAC58  --------->TOE2(3)  --------->TOE2(3)          --------->ANAC58  ------>NtERF2----------->HVH21--------->ZAT14<--------  --------->TOE1(3)       --------->WRKY18(1) --------->DEAR3(1)         --------->ANAC58 -----------   tttcccttaaatttcatacgacgtcgtagtcaagcatctaccttctcgacgacgacgacgtgctgaccccattgaacgctacactaacggagacgttaat  23792800                                              <---------YAB1                                              --------->ICU4                                              <---------ATHB12                                             <---------TOE2(3)                                           <---------AHL20(2)                                  <---------At5g28300                                       ---------                                 <-----------GT1                               --------->SPL7                             --------->ARR11(3)<---------ICU4          <---------ICU4 --------->ICU4 --------TOE2(3)             <---------ARR11(3)--------->ATHB12       --------->AHL20(2)<------------CBF >DOF5.7(2)              ---------->DOF2  --------->AHL20(2)    --------->ANAC58 ------->GAMYB      < -MYB52(1)         <---------ANAC58   <---------MYB52(1)        --------->ANAC58--------->MYB46(3) -- >GT1              <---------ANAC58 <---------ZAT6        ---------->DOF2     --------->MYB52(1)   <-   taagaattcgtcgtctgtcttccgtctcaaagatgttactgttatttaatgattttcttagaaagtaagctattaattcccaacggccaagattgagtta  23792900               <------------CBF      <---------LBD16                                                   *TSS -->GT1 <---------MYB46(3)                                             ---------->ID1 ---------AHL20(2)                                                  <---------DAG2 ------->AHL20(2)                                           ---------->DOF2                    ------ --------AHL20(2)   ------->TEIL                      <---------YAB1<----------DOF2   <---------MYB52(1)   aataaatcgacgggtgagattgaatctgtatcaaacgctcttatttagagagaggtatgactgaaagagacttttcgttttcttctccgtttctcgctca  23793000                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                                -----                                     <---------TOE2(2)                         <---------ARR14(2)<---                                     <---------AtMYB61                --------->ANAC58          -----                                   --------->LBD16               --------->ZAT18     <------ZmHOX2a(2)                                  <---------ANAC58        <---------ANAC58    <------ZmHOX2a(1) -----                                  <---------ANAC58        <---------ANAC58    =======================                                  <---------ANAC46        <---------ANAC46    ==============HOX2a_HOX2a                                 <---------LBD16         <---------LBD16   ------->PIF5         <----                                 <---------------------WRI1   ---------->DOF2 =======================                         <---------TOE2(3)        <<<<<<<<<<<<<<<<<LFY--------->ANAC58          <---- ---->CDC5               <---------TOE1(3)  ---------->DOF2 <------NtERF2  <-------PIF5         <----   tcgcttactgaaaccagaaacaagtttagggtttttgcggaggtttcaaagttaacaatggcggaagagcacaagcacgaggaatcgatcatggagaaga  23793100         --------->CCA1(2)         <------ZmHOX2a(2)        --------->ARR11(3)        <---------ARR11(3)        --------->ARR14(2)        <---------ARR14(2)      ----------->ARR10 --->ZmHOX2a(2) ------GLK1(1) ----->GLK1(1) -----AGP1<-------TEIL ---->ARR14(3)                                                <---------ARR11(3) ---ZmHOX2a(2)                                             --------->YAB1 ---->ARR14(2)                                         <---------YAB1                               < ---->ARR11(3)                                      ----------->TGA1                                - ====HOX2a_HOX2a                             <---------GLK1(2)--------->ARR11(3)                   <- -----ARR14(2)                               --------->ARR14(2)        <---------CCA1(2)        <---- ===HOX2a_HOX2a                       <<<<<<<<<TBF1 ----------->HVH21<---------ANAC58     <---------- -----ARR14(3)                  <<<<<<<<<TBF1<---------ARR14(2)<---------GLK1(1)      --------->ARR11(3) -----ARR11(3)     --------->ICU4  <<<<<<<<<TBF1  <---------At4g35610<---------ANAC58 <---------ARR11(3)   tctctgagaagatccatggtcacgatgactcttcttcttcttcttccgattcggatgacgataagaactctgcgtctctcaaaaccaagatttatcgtct  23793200                                      <------NtERF2                                     --------->LBD16                                    <---------ANAC46                                   <------NtERF2                                   <---------LBD16                                  ------>NtERF2              <----------DOF2                                  <---------MYB46(3)------>ZmHOX2a(2)                                 <---------DEAR3(1)--------->GLK1(1) ---------HSFB2a(2)              --------->ALFIN1  <---------GLK1(1)                    <---------YAB1 -------->HSFB2a(2)       <----------DOF2         --------->ARR11(3)           <----------DOF2    <-- --------LBD16            <---------DAG2          <---------AGP1       --------->ARR14(2)     <------ ------DOF2            --------->ANAC58           <---------ARR11(3)   <---------ARR14(2)     <------ -GT1                  --------->ANAC58           ------->TEIL    <-----------GT1     <-----------GT1   tttcggaagagaacagcctcttcacaagcttttcggtggcggaaaacgtatggatctctctctctttttcaccgatttgcgattttagttactatttctt  23793300     <---------HSFB2a(2)                                                                            <     --------->HSFB2a(2)                                                                            <    ------>ZmHOX2a(2)                          <---------ANAC58                                     <    ====================================HOX2a_HOX2a                                                 <   =====================================HOX2a_HOX2a                                                 <   <------ZmHOX2a(2)                           <---------ANAC58                                    --  --------->ARR14(2)                           <---------ANAC46                                    <-  --------->ARR11(3)                           <---------AtLEC2                        --------->MYB52(1)  <---------ARR14(2)              --------->ARR14(2)                                  --------->TOE1(2)  <---------AGP1                  <---------ARR14(2)                                 <---------MYB52(2) <---------ARR14(1)              <------ZmHOX2a(1)                             --------->CCA1(2)   -- <---------CCA1(2)             <---------TOE2(3)                              <---------ARR11(3)   <- ---------------AGL1           <---------TOE2(2)        <---------ANAC46  --------->YAB1       <----- ---ANAC58            <---------WOX13(1)  <-----------RAV1(1)           --------->GLK1(2) --------->ATHB12 ---ANAC58          --------->ATHB12      <---------MYB46(3)     <-------TEIL<------ZmHOX2a(1) <-----   atcggatctggaatctagccattgattgagacttaggatttgatttgttgcttggattgagtatagattcagaaaatcaggatataaacgaacgatttgg  23793400               <---------HSFB2a(2)               --------->HSFB2a(2)                                                      <---------RAP2.6(3)              <---------LBD16                                                           <---------DDF1        <-----------------AGL1                                                          ------>NtERF2        <---------ANAC58                                                               --------->RAP2.6(2)        <-----------------AGL2                                                         <---------ETT(1)        <---------ANAC58                                                               <---------ETT(2)   <---------MYB46(3)        --------->GLK1(2)                                         >>>>>>>>>>AtTINY2 ---------ANAC58             <---------ARR11(3)                                        --------->At1g77200 ------MYB83--------->ARR14(2)                                                        --------->DEAR3(2) ------MYB46(1)--------->HSFC1(1)                                                 ----------->RAV1(2) ---------ANAC58             <-----------ARR10                <---------YAB1      --------->At4g35610 ---------ANAC46             --------->ARR14(2)             --------->YAB1        --------->ZAT2 ------->MYB111(1)  --------->At4g35610          <---------ANAC46  --------->AHL20(2)--------->At4g35610 --------AtMYB61    <---------At4g35610          <---------ANAC58  <---------AHL20(2)------>NtERF2--- ------->MYB46(2)  --------->GLK1(2)             <---------ANAC55(2)              <---------At4g35610 --------MYB46(3) <---------GLK1(2)      ----------->GT1   <---------YAB1         <---------ZAT2----- -MYB46(1)  <---------ARR14(2)         --------->ICU4 <---------At4g35610       <-----------RAV1(2) - -MYB83<---------At4g35610   <---------ARR14(2)  <---------ANAC58 --------->AHL20(2) <---------ATERF1(1)   tttggtgtttgctggttctggaatctgagagtatctatggaatgagtaatttcgtaagcttattatcatttatttgtttgattcagctgccgacattttc  23793500  Previous    Next  AGI:  At1g64090.1    Description:  reticulon family protein (RTNLB3). similar to BTI3 (VIRB2-INTERACTING PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT5G41600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65886.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 23792972    to: 23794585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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