Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------NtERF2                                                                                             --------                                                                                            <--------                                                                                            <--------                                                                                           <---------LBD16                                          <-----------ARR10                             --------->At4g35610              <---------YAB1              --------->ARR11(3)                           <---------MYB46(3)            <---------ICU4                --------->GLK1(2)                         ------------>AtMYB77            --------->YAB1                <---------ARR11(3)                     ----------->RAV1(1)           <---------ATHB12         ----------->RAV1(1)                         --------->MYB46(3) ---------->ID1  ---------->DOF2  --------->At4g35610                         XXXXXXXXXXXXXXXXXXXXXXX -->LBD16  --------->ICU4        --------->ANAC58         ---------->DOF2     ----------->RAV1(1) -LBD16  --------->YAB1          --------->ANAC58 ------>ZmHOX2a(1)  ---------->DOF2------->GAMYB   tttgtcttctctaatcatgaaaagaaatggatgatcagcaacaaaatctatcctcttaacaaaagcacatccaaagcctccaacaacagcagttgcggca  23754700                                               --------->ANAC58                                               --------->ANAC58       <---------ALFIN1            <---------DAG2                                                   -      <---------At4g35610          <----------DOF2                                            ------- ->LBD16                        --------->ANAC58                                              <------ -RAP2.6(2)                     --------->ANAC58                                              ------- -ANAC46               --------->TOE2(3)     ---------->DOF2               ---------->DOF2--------->LBD16 >MIR404            --------->WOX13(1) <---------------AtSPL8       <---------ATHB12---------->DOF2 <   atagcttcagcaccttcttcatcaatctcaacacaagctttttggtacaaagccatttcatccaatcccaatctattgaaagcccttgaagccgagaatc  23754800                                           <----------DOF2                                           <---------DAG2                                        <-----------GT1                       <---------ALFIN1                                     --------->TOE1(3)                       ------>MYB46(1)       ------>ZmHOX2a(2)             <----------DOF2                         -------->P     <---------ARR11(3)            ------>MYB46(1)                           ------>MYB83     --------->ARR11(3)            ------>MYB83                             ----------->RAV1(1) -------->ARR14(2)            <-----------GT1       --------->ANAC58 --------->ANAC58 -->GLK1(2)                <---------ARR14(2)       --------->ANAC58 --------->ANAC46 ---ARR14(2)               --------->ARR14(2)      <---------LBD16   --------->ANAC58 -->ARR14(2)         --------->GLK1(2)--------->DOF5.7(2)  <---------YAB1  --------->AtMYB61 ---------ARR14(2)  <---------GLK1(1)--------->TOE2(3)  ---------->TaMYB80--------->MYB46(3)   cgaattcgatcttaaactttgggattccgaattcaccaactttaactttttgactcggaatatgactatccaagaaaccaacacttgatgccattttctc  23754900                                                                 <--------HAHB4                                                                 <---------ICU4                                                                 --------->YAB1                                                                <---------YAB1                  <----------DOF2                  --------->HSFB2a(1)           --------->ANAC46                        <---------HSFC1(2)                         -------      <-----------GT1                              --------->HSFC1(2)                        <------ZmHOX2a(1)   <---------GLK1(2)                               <---------HSFB2a(1)                  <----------DOF2   <---------ARR11(3)                    <-------TEIL       ----------->GT1           --------->At4g35610   cacaagattatccaaaccatctttctcatcagggagatagaaatgcatagagaagtttcgactggtatcattaccttgtcgaaatgggagctttaggacc  23755000                                      <---------At4g35610           --------->ANAC58           --------->At4g35610                   ----------->GT1           --------->ANAC58        <---------At4g35610                     <---------TOE2(3)       --------->YAB1           ---------->DOF2                        --------->YAB1      <---------YAB1          <---------YAB1                  --------->bZIP60(1)                 ---   --------->MYB46(3)         ------>ZmHOX2a(1)        <---------GLK1(2)   --------->DAG2       <---- -->ARR11(3)               ---------->ID1  <---------YAB1     <---------bZIP60(1)           <--------   ttgaaaccatcataagcctctatgtattggtccttatagctgctcatgagagacacagaaactgatgtcccattgataaggtgaaagtctcggtctttcg  23755100                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                  ==============HOX2a_HOX2a                                                                                  ------>ZmHOX2a(2)                                                                                  <-------TEIL  -----                                                                                 <------ZmHOX2a(2)                                                                                 ===============HOX2a_HOX2a                                                                                <---------ARR14(2) ==                                                                ----------------------->TaNAC69(2) <-                                                             <------------CBF   --------->ARR14(2)---                          --------->ZAT2          --------->HSFB2a(2)      <-----------GT1      -----  --------->ATHB12        <---------ZAT2          <---------HSFB2a(2)      --------->MYB52(1) ------- ------>ATHB12           --------->ANAC58      <---------ARR14(2)     <---------ANAC46   ============ -------TGA1    <-----------GT1        <-------TEIL  ---------->DOF2  <---------ANAC58   ============ --DOF2<---------LBD16   --------->ANAC58      --------->ARR14(2)     <---------ANAC58   <------ZmHOX2a(1)   tcattgatttgtggaatttttcttcccaagctcccttgaagtacatgcggttccataaatccaaattgtttcgcttgtaacggatccatgaggaagaaga  23755200                             --------->ZAT18                        ---------->DOF2                       ----------->HVH21                       --------->ALFIN1                     <---------TGA1a                     --------->bZIP60(1)                     <---------bZIP60(2)                     <---------O2  --------->YAB1     --------->TGA1a ------RVE1(1)       --------->O2 ---ZmHOX2a(2)       <---------ANAC58 -----AGP1           <---------bZIP60(1) -----ARR14(3)       <---------ANAC55(1) -----ARR11(3)       ==============bZIP_DOF ---->ARR14(2)       --------->ANAC55(2) -----ARR14(2)       <---------ANAC55(2) ---->ARR11(3)       <---------ANAC58 ==============================bZIP_DOF ---------DOF2       <---------ANAC46       --------->YAB1 --->ZmHOX2a(2)   ----------->TGA1          --------->ATHB12 ---->ARR14(3)    ----------->HVH21      <------------CBF                  --------->AHL20(2) ---->ARR10 <---------MYB52(1)       <---------ZAT14                   --------->AHL20(2)  --------->AtMYB61 ====HOX2a_HOX2a <-----------HVH21   <---------ZAT18          --------->TOE1(3)      --------->YAB1 ===HOX2a_HOX2a <---------ZAT6       --------->ZAT18          --------->TOE2(3)     <-------TEIL   --   tcttttataagaccattagtgtgacgtgaagcccacgagttcacattgataggcacttcttcagccttaaatataaaataaaaacattcatcaccaaaac  23755300                                 --------->CCA1(2)                                <---------ARR11(3)                                --------->ARR11(3)                            ---------->DOF2                                                     <<<<<                           --------->AHL20(2)                                                  <-----                       --------->AHL20(2)                                                      ------                      <---------ATHB12                                                   <<<<<<<<<<MYB80  ----------->GT1     --------->AHL20(2)                                                <------MYB83 -------->DOF2    ------------>CBF                                  --------->MYB52(1)  <------MYB46(1)   caaaagctaaaaccattttttccaataaataaaagatactagactatttcaaatttgtcaaaaacagagcaaacagagtattagtacatttggtttgaaa  23755400                                                                           <---------WOX13(1)   <---------ZAT14                                                       --------->ATHB12   --------->ZAT14                                                    ---------->DOF2    --------->ANAC46 --------->ANAC46                             --------->GLK1(2)    <---------HSFB2a(2)   ------->GAMYB <<<<<GATA-1                     <---------GLK1(2)               <---------ATHB12       --------->MYB46(3) ----GLK1(1)            <----------DOF2---------->DOF2       <---------ATHB12   ------>ZmHOX2a(2) --->GLK1(1)          --------->At4g35610    <---------GLK1(2) --------->WOX13(1)  <------ZmHOX2a(2)   tccactgaagagtgaagcctaatcagctttgaaaaaattctcaaagagattcttggaagacgaatcaatcgagaaagattgatcgatccaagcgccattt  23755500                                                                                                  ===                                                                                                  ===                                                                                                  <--                                                                                               ------                                                                                               <-----                                                                                              <------                  <------NtERF2                                                               <------                 ------>NtERF2                                                               ------>ZmHOX2a(2)                --------->RAP2.3(3)                                                          ========                --------->DEAR3(1)                                                           ========                --------->RAP2.6(2)                                                         =========                --------->RAP2.3(2)                                                         <------ZmHOX2a(2)               --------->DEAR4(2)                                                           =========               --------->RAP2.3(1)                        --------->LBD16                   =========               --------->ORA47(2)                        --------->ANAC58                  --------->ARR14(2)               <---------RAP2.6(2)                       --------->ANAC58                  <---------ARR11(3)               --------->ATERF1(1)  <------NtERF2       <---------LBD16                    --------->ARR11(1)              <---------ATERF1(1)   <---------At4g35610<---------bZIP60(2)                 --------->ARR11(3)          <---------MYB52(1)        --------->At4g35610<---------ANAC46                    <---------ARR14(2)         <-------GAMYB            <---------WRKY12  ----------->TGA1                      <---------HSFB2a(1)        ------>ZmHOX2a(2)<-----------GT1       --------->YAB1                             <---------GLK1(1)        <---------MYB46(3)       <---------MYB52(1) ----------->HVH21                    ----------->ARR10  --------------------->WRI1    <-----------TGA1  <---------ICU4         <---------At4g35610---------  <----------DOF2<------NtERF2  <-----------HVH21--------->ICU4          --------->At4g35610---------   gccactttgatcgttgggccgcctatattactaccgtcagcgaagacagtagtaatgacgcggaagacggagttgagctcatcgatagaagaagatccga  23755600  Previous    Next  AGI:  At1g64010.1    Description:  serpin, putative / serine protease inhibitor, putative. similar to serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G64030.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Protease inhibitor I4, serpin; (InterPro:IPR000215); contains InterPro domain Protease inhibitor I4, serpin, plant (InterPro:IPR015554) Range:  from: 23754547    to: 23755104    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g64020.1    Description:  serpin-related / serine protease inhibitor-related. similar to serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G64030.1); similar to putative serpin [Arabidopsis lyrata] (GB:AAO42472.1); contains InterPro domain Protease inhibitor I4, serpin; (InterPro:IPR000215); contains InterPro domain Protease inhibitor I4, serpin, plant (InterPro:IPR015554) Range:  from: 23755419    to: 23755784    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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