Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->HSFB2a(2)                    <---------HSFB2a(2)                   <---------LBD16                 <---------ARR11(3)                 --------->ARR11(3)                 <---------ARR14(2)              <---------------AGL15             <-----------------AGL3             ===========================================================MADS_MADS         ----------->HVH21      <-----------ARR10      --------->GLK1(2)      <---------ARR14(2)                                       ----------->GT1      --------->ARR14(2)                                <---------------AGL15      <---------ARR11(3)         <---------ZAT18      <---------ZAT14      --------->ARR11(3)         --------->ZAT14      --------->ZAT14 ---------->GT1 <---------CCA1(2)--------->ZAT18    --------->ANAC46 ---------RAV1(2)--------->ARR14(2)              --------->MYB46(3)   --------->ANAC46      --------- -------HVH21----------------->AGL2      <---------ICU4--------->ANAC46                  ----------->RAV1(1)   tcagggaaaatctgacctatatctggaaggcctagtgctcccaaaattgcatccactacacaatgaagtaacacatcgcctacacaaattccaacatcaa  23743600                                                                                    ------>NtERF2                 <---------ARR11(3)                                         <---------At4g35610                 --------->ARR11(3)                           <-----------GT1      --------->DEAR3(1)           --------->TOE1(3)                         --------->ANAC58       <---------ZAT2     --------->YAB1                      ------>MYB83--------->ANAC46       --------->At4g35610   <--    <---------ATHB12       <----------ID1------>MYB46(1)  --------->ICU4  --------->ZAT18   --------- >TOE2(3)  --------->TOE2(3)        <-----------GT1  --------->ANAC58     <---------ZAT18  <---------ATHB12   actcaaatcaaaaccctaaaatctacaagaagacgaattaaccaaatcgaatttcaagaaatgtttaccatcggagtgagcttcgcagcctctatcatga  23743700                                                                                          <------MYB46(1)                              ----------->RAV1(2)                                        <---------AtMYB61                           --------->GLK1(1)                              --------->ANAC58--------->MYB52(2)                           <---------GLK1(1)                              --------->ANAC58<------MYB83                          --------->ARR14(2)                            --------->MYB52(1)<---------MYB46(3)  <-----------GT1         <---------ARR14(2)                      --------->ARR14(2)    <--------P --  --------->YAB1         <------ZmHOX2a(1)                   <---------WRKY18(1)       <-------GAMYB ----ZmHOX2a(1)  --------->YAB1                             ----------->HVH21         <---------MYB46(3) >YAB1       --------->DEAR3(1)              <---------REM1(1)    <---------ARR14(2) <---------AtMYB61   ggaataacaatcccaccgatgatcagaggataccctggctctaaacgatgtagatcgaaaccatgaccgattcgaaacggaagcgttttggttggtttct  23743800                          <------NtERF2                         <---------ATERF1(1)                         <---------RAP2.3(1)                         ------>NtERF2                        <---------DEAR3(1)                        <---------RAP2.3(3)                        <---------RAP2.3(2)                      <---------ATERF1(1)                     --------->ETT(2)                  <---------bZIP60(2)                  <---------O2                  --------->O2        ----------->RAV1(2)                  <---------ANAC46    <---------At4g35610               ----------->HVH21      --------->ZAT2            --------->ATHB12 <------NtERF2           <-------TEIL--------->ATERF1(1)         <---------GLK1(2)<---------LBD16                        --------->YAB1   ----------->HVH21 <---------DEAR3(1)                         <---------YAB1                     -- <---------bZIP60(1) --------->DEAR3(1) ----------->HVH21  --------->ANAC58                     ----- --------->bZIP60(1) <---------ETT(2) <---------ZAT2       --------->ANAC58                     ----- ------->ZAT14<---------WOX13(1)      --------->At4g35610<------ZmHOX2a(1)                     ------   ctgaagtcacagattcattgacgtcgacggcggaagaagcagctgaaaccgaggctgaaggacgacatgataacgagagagacttcttcggtctccaaac  23743900              <------NtERF2             --------->LBD16           <---------LBD16           <------NtERF2           --------->ATERF1(1)          ------>NtERF2          <---------RAP2.3(1)         --------->DEAR3(1)       <-----------HVH21   ------>ZmHOX2a(2)  <------ZmHOX2a(2) <---------ARR11(3) <---------ARR14(2) --------->ARR14(2) --------->ARR11(3) <-----------ARR10               ----------->GT1 ------->DEAR3(1)           <----------DOF2                                   <---------ANAC46      < -->GAMYB<---------DEAR3(1) <---------DAG2                                --------->ZAT2           <- ---->ANAC46<---------LBD16<---------ANAC58                >>>>>>>>>TBF1  --------->At4g35610      <- --->MYB46(3)------>NtERF2 <---------ANAC58         ---------->DOF2       <---------At4g35610     ---   gccgatcttcgtcgccgggagaaggaatggctttttggtaatttgagagtgaaacaaagaagaagaagacagtagaagctgagtagaagaagtagccatt  23744000                                            <---------ANAC46                                          <---------MYB46(3)   <------------CBF     <<<<<<<<<TBF1                        <---------ANAC46    --------->ATHB12 --------->ARR14(2)                      --------->ALFIN1   <----------DOF2 <---------ARR14(2)                      <---------AtMYB61  <---------------AGL15 <---------MYB52(1)                    <-----------RAV1(1)  --------------->AGL15           --------- ---------RAP2.6(3)               <---------ICU4           <-----------------AGL2          <---------AHL20(2) --------ANAC58                  --------->ICU4       <---------ICU4             ---------->DOF2   -- --------ANAC58                  <---------YAB1      <-------TEIL               ------>ZmHOX2a(1) <-- ------------>AtSPL3       *TSS--------->YAB1    <---------KAN4(2)     <----------DOF2     --------->AHL20(2)   gccgttcttcttcgattttctggtttactcaattcataattctgtggtggaaatattcatttctttattgggcctttccttcctaaagcccatttaaaat  23744100                                                          --------->REM1(2)                                                         --------->ALFIN1                                                        <-------PIF5                                                        <-------MYC2                                                        ------->PIF5                                                        <-------MYC4                                                        ------->MYC4                                                        ------->MYC2                                                        <-------MYC3                                                        ------->MYC3                              <---------ARR14(2)       --------->TGA1a                              --------->ARR14(2)       ============================================bZIP_DOF                           <---------ANAC55(2)         <---------ANAC55(2)                      ----------->GT1                  <---------O2         <---------ETT(2)  --------->ANAC55(2) ==================bZIP_DOF      *TSS         --------->ETT(2)<-----------GT1       ---------->DOF2  <------ZmHOX2a(1)   ---------->ID1 >AHL20(2)          --------->YAB1   <---------ZAT14   --------->O2       <---------ICU4   <---------TOE2(3) ------->YAB1      <------ZmHOX2a(2) --------->ZAT14   <---------ANAC46   --------->YAB1<----------DOF2 -------YAB1    <---------ETT(2)   --------->ANAC46    <---------TGA1a<-----------GT1   <---------DAG2   atgataaactctcgaccgtcgatcatgttacatatccactgaagtttactaaagaccacgtgtagaggagttttactcatcacttcttcgctttaggttt  23744200                                                                        <-----------GT1                                                                --------->ANAC58                                                                --------->ANAC58                                                              ------>NtERF2                                          --------->ANAC46    <---------ATERF1(1)       <------NtERF2                                          <---------ALFIN1   --------->DEAR3(1)        --------->LBD16                             <---------ALFIN1                ----------->HVH21        --------->LBD16                           <---------ALFIN1     <----------DOF2--------->ATERF1(1)   <---------LBD16                      ------>ZmHOX2a(1)<---------LBD16       <---------DEAR3(1)    ------->GAMYB       <---------GLK1(2)  <---------ZAT18--------->LBD16--------->MYB52(1)        --------->MYB46(3)       --------->ARR14(2) --------->DEAR3(1) --------->DEAR3(1)<------NtERF2  <---------ATHB12   tctgttccagtttctctaaacttcctcgcccactcttctcttccgcaccgcttttgaaaaacggcgacgcattgtctccattcaatcgccggaaaattag  23744300                     <---------ARR14(2)                     --------->ARR14(2)                    <---------HSFC1(2)                    --------->At4g35610                    <---------ZAT2                    <---------At4g35610                    --------->ZAT2                    --------->HSFB2a(1)                    <---------HSFB2a(1)                    --------->HSFC1(2)                   ----------->ARR10                 <---------MYB52(1)                 <------NtERF2                --------->LBD16              <------NtERF2              <---------LBD16              --------->RAP2.3(1)              --------->ATERF1(1)             <---------RAP2.6(1)             ------>NtERF2             <---------RAP2.3(1)             <---------ERF1             <---------RRTF1(1)             <---------ATERF1(1)            <---------DEAR3(1)            --------->RAP2.3(2)            --------->DEAR3(1)           --------->ORA47(2)           --------->RAP2.3(1)           --------->ATERF1(1)           --------->DEAR4(2)           --------->RRTF1(1)           --------->RAP2.6(1)           <------NtERF2           <---------ABI4(2)           --------->ERF1          <---------DEAR4(2)          <---------ERF1 --------->LBD16          <---------RRTF1(1)          <---------RAP2.6(1)          ------>NtERF2<---------LBD16                       <----------DOF2          <---------ATERF1(1)                              ------>NtERF2          <---------RAP2.3(1)                             --------->RAP2.3(2)          <---------ORA47(2)                              --------->DEAR3(1)         <---------RAP2.3(2)                             --------->RAP2.3(1)         <---------RAP2.3(3)                            <---------At4g35610         <---------DREB2C(2)                            ------>NtERF2         <---------RRTF1(2)                             --------->LBD16         <---------RAP2.6(2)                           --------->ANAC46         --------->ATERF1(2)                       <---------ARR14(2)         <---------RRTF1(3)                        --------->ARR14(2)         <---------DEAR3(1)      <-------TEIL     <------ZmHOX2a(1)                               ---         <---------ATERF1(2) --------->MYB59<---------ANAC55(2)                       ----------->GT1        --------->ATERF1(1)<---------MYB52(1)    --------->ICU4                   <---------MYB46(3)   aagagaagatggcggcgccggaagctccggttaagtacgtcggaatatgtaaggattccgccgctttcaagcttatgaaatcgatggtgagtgaattttc  23744400                                                         ----------->GT1                                                         <------MYB83                                                        <---------MYB46(3)                          <---------AHL20(2)           <---------WOX13(1)  <------MYB46(1)                         --------->AHL20(2)    --------->AHL20(2)          <------MYB83              <---------ANAC46---------->DOF2  <---------AHL20(2)        <--------P      <---------YAB1   <---------ARR11(3)   ------>MYB46(1)           <---------TOE1(3)    --------->YAB1     --------->ARR11(3)   ------>MYB83<---------AtMYB61--------->ALFIN1   --------->ICU4<---------ZAT14          <---------MYB59<------MYB46(1)<-------GAMYB             --- --------->YAB1  --------->REM1(2)      <---------ARR11(3)            <---------TOE2(3)   <------ZmHOX2a(1) --->ZmHOX2a(1)  --------->ZAT14        --------->ARR11(3)      <---------AHL20(2)  <------ZmHOX2a(1)   ctgtaatgatgttaatgtgtgtagagattttataaaggagaagacctaattttttggattggtgatttttttagggttgggaagaaggagaaggacttgg  23744500  Previous    Next  AGI:  At1g63970.1    Description:  ISPF (Homolog of E. coli ispF (isoprenoids F)); 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Identical to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (ISPF) [Arabidopsis Thaliana] (GB:Q9CAK8;GB:Q8LE87;GB:Q9GDE3;GB:Q9SH48); similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate [Brassica rapa] (GB:BAF81514.1); contains InterPro domain 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; (InterPro:IPR003526) Range:  from: 23742354    to: 23744027    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63980.1    Description:  D111/G-patch domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO65906.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) Range:  from: 23744179    to: 23746965    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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