Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------DAG2   <----------DOF2 ------->DOF2 --->ANAC58                                       --------->ATHB12 --->ANAC58                       <---------ARR11(3)                                           <----- -->DAG2              ----------->RAV1(2)        <---------YAB1      <---------DAG2      <---------ANAC58 -->DOF2 <---------MYB52(1)       --------->ARR11(3)                 <----------DOF2     <---------ANAC58   caaagcttttcgttactcacattcccctgttcttgagatttttgatgagttttgatttgaaaccctcaaaacttttttttgttctgttcatgcgttttaa  23741500                                                                                    --------->ARR11(3)                                                                                   --------->ATHB12                                                                                   <---------ICU4            <---------ARR11(3)                                                  <---------ICU4            --------->ARR11(3)                                                  --------->YAB1            <---------GLK1(2)                                            --------->TOE2(3)    <------          ----------->ARR10                                            ------>ZmHOX2a(2)<---------YAB1          --------->ICU4                                           <---------YAB1 <---------YAB1    --------->DAG2                                               --------->CCA1(2)--------->ICU4<----  ---------->DOF2                                              --------->YAB1  <---------AHL20(2) ----AHL20(2)                              --------->ANAC55(2)<---------YAB1   <---------ATHB51 <----   attgaaaaggcaaagatttttcgattacacacacagactctatttatgtgattcttcatgggttatgatatgatcccttaaataatgattttgatttttc  23741600                                                <---------ICU4                                                --------->ATHB51                                               <---------YAB1                                             <---------ICU4                               <---------ARR11(3)                               <---------ARR14(2)                    <---------ZAT6      <---------ATHB12   <---------ANAC58                  ----------->GT1     <-----------GT1      <---------ANAC46          <---------ICU4       --------->ARR14(2)      <XXXXXXXXXXXXXXXXXXXXMIR403         <---------YAB1       ------>MYB46(1)--------->YAB1<---------ANAC58       --------->YAB1         <---------ARR14(1)--------->ATHB12 -----GT1--------->ICU4       <---------CCA1(2)--------->ICU4 -----ANAC58 --------->AHL20(2)<---------ARR11(1)<------------CBF      <---------TOE2(3) -----ANAC58<---------YAB1    ------>MYB83  <---------ATHB12 <---------ZAT6                       <--   ttgtctcgttcatgattatttagtgaaaaaccaaatcttttaatcactcattattgagtttgagtgtgagtttaagtttaagtttcttcttgttaatgag  23741700                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                     <---------ALFIN1                                                                                   ------>MYB46(1)                                                                                   ------>MYB83  <---                                                                                   -------->P    <---                                                                                  --------->MYB55(1)                                                                                 --------->TOE1(2)                                                                                 <---------MYB46(2)                                                                                 <---------MYB111(1)                         -------->HAHB4                                          <---------MYB59 ----                         --------->YAB1                                         <---------HSFB2a(1)                        <---------YAB1                                          --------->HSFB2a(1)--                      --------->YAB1                                            <---------HSFC1(2)===            <----------DOF2      <-----------------AGL3                         --------->HSFC1(2)<--       ---------->DOF2<---------ICU4                <---------TOE2(3) --------->TOE2(3)         -----  --------->At4g35610<---------YAB1             <----------DOF2    <---------GLK1(1)--------->MYB46(3)  <---------At4g35610--------->ICU4        <<<<<<<<<MYB2      <------------CBF ------->TEIL    ------ --------DOF2      --------->YAB1<-----------------AGL2    <---------YAB1 ---------->DOF2    --------   cttttgctgcaaagctttgaataataataatacgttctgtttttggttttctttatggattatgaattgaaatctcaaaagaacctaccaccttgaaaag  23741800    ------>ZmHOX2a(1)   --------->TOE2(3) ----->ARR14(3) ----->ARR11(3) ----->AGP1 ------ARR14(3)                                                                              <------MYB83 ------ARR14(2)                <---------DAG2                                                <------MYB46(1) --------ARR10                 <----------DOF2                                             <---------WOX13(1) ------ARR11(3)             --------->ZAT6                                               --------->ATHB12 ----->ARR14(2)        --------->YAB1                                                    --------->MYB55(2) ---->ZmHOX2a(2)       --------->TOE2(3)             <---------ICU4                      <---------MYB46(3) ==========HOX2a_HOX2a --------->TOE1(3)   <------ZmHOX2a(1)                            <---------YAB1 ----ZmHOX2a(2)      <---------ARR11(3)  --------->LBD16                           <---------DOF5.7(2) ---->RVE1(1)       <---------CCA1(2)   <---------HSFB2a(2)                        --------->MYB52(1) ----->ARR10     <---------MYB59        <---------LBD16   <---------YAB1         --------->DOF5.7(2) -->DOF2       <---------ARR11(3)       --------->HSFB2a(2)          ---------->DOF2   --------->At5g28300   atcttccttagtctcaagacctaaatcttaacactttttattccaggaattacaactattaccatggattcaaaagaagggaagttaacggtgattggtg  23741900                                                                            <------ZmHOX2a(2)   -----               --------->GLK1(2)                                           --------->ARR14(2)<-------              <---------GLK1(2)                                            <---------ARR14(2)--------              --------->ARR14(2)                                        --------->SPL7   <---------At4g35610              <---------ARR14(2)                                        <---------------------WRI1---            ----------->ARR10       --------->CCA1(2)       --------->REM1(1)------>ZmHOX2a(2)-------       ---------->DOF2          --------->DAG2           <-----------------AGL2--------->LBD16<------   <---------TOE2(3)           ---------->DOF2 --------->ZAT18         <---------MYB52(1)--------->At4g35610   agtttgacgaaatgcagattctcaaaaaactcaaaaagagatgggagagtgcgaaaatggctacatttggcccgttcgatccgaagaaggaagcggaaac  23742000         --------->LBD16        <---------ANAC46       <---------LBD16       --------->At4g35610    ----------->RAV1(2)    <---------At4g35610    --------->ZAT2    <---------ZAT2    --------->At4g35610  <-----------RAV1(2)                                <---------DOF5.7(2) <---------At4g35610                               --------->DOF5.7(2) ---->MYB46(3)                                 <---------DOF5.7(2) --ARR14(2)                                  --------->DOF5.7(2) ->ARR14(2)                               ------->TEIL------->TEIL    <-----------GT1               < ------>At4g35610     ---------->DOF2    <---------DOF5.7(2)        <----------DOF2                -- -->ARR14(2)       >>>>>>>>>TBF1       --------->DOF5.7(2)       --------->ARR11(3)              <--- ---ARR14(2)---------->DOF2         ------->TEIL------->TEIL     <---------ARR11(3)     <---------ICU4   cgctgcagctgcggaaaagaagaagaaagaagaaaatgaacgtgaacgtgaacgtgaacgtgaagaagctctttaccggtctcagtctcaccatgacact  23742100                                              <---------LBD16                                          <---------ICU4                                         <---------YAB1                                         --------->ICU4             --------->CCA1(2)                                       <---------ICU4              <---------GLK1(2)                               <---------ANAC58                    --------->ARR14(2)                         <---------YAB1--------->YAB1              <---------ARR14(2)                    --------->ZAT6    --------->ICU4               <---------ARR11(3) ---------MYB52(1)  --------->ANAC46  <------ZmHOX2a(2)            --------->ARR11(3) ------->LBD16 --------->YAB1  <---------ANAC46                  <---------TOE2(3) ------LBD16   <---------ICU4  <---------ANAC58                  ----------->ARR10      <---------YAB1   ccggtttgtccaatgcatcatcacactactattgtgtgcgatcatgatcacggctgtataatctcttaagatttgcagtatgttaagtctctgattagtc  23742200                             --------->KAN4(2)                            <---------KAN4(1)                     --------->ICU4                           <---------KAN4(2)                      <---------YAB1                        --------->ICU4             --------->AHL20(2)                     <--------P        <---------ICU4             <---------AHL20(2)                 <---------ANAC46      --------->ATHB12        --------->ARR11(3)                <---------LBD16       <---------YAB1           <---------ARR11(3)          <---------AHL20(2)--------->KAN4(1)      <---------AHL20(2)<---------YAB1        <---------AHL20(2) <---------YAB1       ------->TEIL  --------->YAB1              <---------TOE2(3)       --------->AHL20(2)<------ZmHOX2a(1)  <---------TOE2(3)<---------YAB1        <---------YAB1   agaagttgattttatattgacgggtaaggattattctctgatcattgatgtatttatttcagtatgatattattattctctgattttgatttaagaattc  23742300                                                                                                -----                                                                                             <-------                                                                                             --------                                                                                             <-------                --------->MYB46(3)                  --------->ANAC58                 --------->AHL20(1)              ----------->RAV1(1)                   --------->ANAC58                 <---------AHL20(1)           --------->ANAC58                         --------->ANAC46               <---------ATHB12           --------->ANAC58            --------->AHL20(2)                       --------------->AGL15         ---------->DOF2               <---------AHL20(2)           --------->ANAC58 <---------AHL20(2)      --------->ANAC58              --------->AHL20(2)              --------->ANAC46--------->YAB1      --------->ANAC58             --------->AHL20(2)  --------->ARR11(3)      ----------------->AGL3 <---------ETT(2)       ----------->HVH21     <-----------HVH21     --------->ANAC58--------->AHL20(2)   atgtagacaaggaaagcaacaactatatgacagacaaataaaaaattgtgtcacaaggaacttgcagtccaagacacagtttccaattatattcaaatct  23742400  Previous    Next  AGI:  At1g63960.1    Description:  contains domain PTHR22814 (PTHR22814); contains domain PTHR22814:SF5 (PTHR22814:SF5) Range:  from: 23741864    to: 23742169    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g63970.1    Description:  ISPF (Homolog of E. coli ispF (isoprenoids F)); 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Identical to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (ISPF) [Arabidopsis Thaliana] (GB:Q9CAK8;GB:Q8LE87;GB:Q9GDE3;GB:Q9SH48); similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate [Brassica rapa] (GB:BAF81514.1); contains InterPro domain 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; (InterPro:IPR003526) Range:  from: 23742354    to: 23744027    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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